Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0024911 Helianthus annuus HOM05D003660 ORTHO05D003415 2.2e-49 198.7 109 100.0
Lsat_1_v5_gn_1_57561 Lactuca sativa HOM05D003660 ORTHO05D003415 4.8e-44 181.0 109 89.0
ECA248G2122 Erigeron canadensis HOM05D003660 ORTHO05D003415 7.0e-43 177.2 109 85.3
HanXRQChr02g0053831 Helianthus annuus HOM05D003660 ORTHO05D003415 1.5e-29 132.9 92 76.1
ECA233G4994 Erigeron canadensis HOM05D003660 ORTHO05D003415 3.1e-27 125.2 111 65.8
CiPaw.10G014700 Carya illinoinensis HOM05D003660 ORTHO05D003415 3.3e-24 115.2 108 63.0
CANSAT64G0684 Cannabis sativa HOM05D003660 ORTHO05D003415 1.2e-23 113.2 108 63.0
CSS0013947 Camellia sinensis var. sinensis HOM05D003660 ORTHO05D003415 6.8e-22 107.5 108 56.5
TAR636G3190 Trochodendron aralioides HOM05D003660 ORTHO05D003415 6.8e-22 107.5 108 56.5
Eucgr.K02602 Eucalyptus grandis HOM05D003660 ORTHO05D003415 8.9e-22 107.1 108 60.2
Nn6g34777 Nelumbo nucifera HOM05D003660 ORTHO05D003415 8.9e-22 107.1 108 55.6
MD14G1033900 Malus domestica HOM05D003660 ORTHO05D003415 1.2e-21 106.7 108 58.3
TAR633G2283 Trochodendron aralioides HOM05D003660 ORTHO05D003415 1.5e-21 106.3 107 54.2
TAR623G0029 Trochodendron aralioides HOM05D003660 ORTHO05D003415 2.0e-21 105.9 108 53.7
PSO339G2942 Papaver somniferum HOM05D003660 ORTHO05D003415 5.7e-21 104.4 108 55.6
PSO801G0667 Papaver somniferum HOM05D003660 ORTHO05D003415 5.7e-21 104.4 108 55.6
Prupe.7G099100 Prunus persica HOM05D003660 ORTHO05D003415 7.5e-21 104.0 108 57.4
Manes.08G030600 Manihot esculenta HOM05D003660 ORTHO05D003415 2.2e-20 102.4 109 58.7
RcHm_v2.0_Chr3g0475141 Rosa chinensis HOM05D003660 ORTHO05D003415 2.2e-20 102.4 108 58.3
MD12G1033100 Malus domestica HOM05D003660 ORTHO05D003415 2.8e-20 102.1 108 55.6
PGR004G0692 Punica granatum HOM05D003660 ORTHO05D003415 2.8e-20 102.1 108 57.4
Sc12g0004740 Simmondsia chinensis HOM05D003660 ORTHO05D003415 2.8e-20 102.1 108 54.6
MBI01_g04518_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 3.7e-20 101.7 108 57.4
Rhsim01G0202600 Rhododendron simsii HOM05D003660 ORTHO05D003415 6.3e-20 100.9 108 53.7
Thecc.09G277300 Theobroma cacao HOM05D003660 ORTHO05D003415 6.3e-20 100.9 108 53.7
Actinidia35475 Actinidia chinensis HOM05D003660 ORTHO05D003415 1.8e-19 99.4 108 52.8
Gorai.006G113800 Gossypium raimondii HOM05D003660 ORTHO05D003415 1.8e-19 99.4 108 54.6
vmacro14331 Vaccinium macrocarpon HOM05D003660 ORTHO05D003415 1.8e-19 99.4 108 51.9
ClCG10G018570 Citrullus lanatus HOM05D003660 ORTHO05D003415 2.4e-19 99.0 108 54.6
Gohir.A09G097300 Gossypium hirsutum HOM05D003660 ORTHO05D003415 2.4e-19 99.0 108 54.6
Ciclev10029624m.g Citrus clementina HOM05D003660 ORTHO05D003415 3.1e-19 98.6 108 50.9
Hma1.2p1_1178F.1_g264370 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 3.1e-19 98.6 108 54.6
Hma1.2p1_2789F.1_g328565 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 3.1e-19 98.6 108 54.6
Lj3g0024971 Lotus japonicus HOM05D003660 ORTHO05D003415 4.1e-19 98.2 108 52.8
Medtr2g086880 Medicago truncatula HOM05D000010 ORTHO05D005236 4.1e-19 98.2 108 52.8
Peaxi162Scf00224g00520 Petunia axillaris HOM05D003660 ORTHO05D003415 4.1e-19 98.2 108 52.8
MSTRG.12378 Avicennia marina HOM05D003660 ORTHO05D003415 5.4e-19 97.8 108 54.6
MSTRG.17695 Avicennia marina HOM05D003660 ORTHO05D003415 5.4e-19 97.8 108 52.8
Hund18786 Selenicereus undatus HOM05D003660 ORTHO05D003415 7.0e-19 97.4 108 52.8
Thecc.05G099700 Theobroma cacao HOM05D003660 ORTHO05D003415 7.0e-19 97.4 108 52.8
VMungo1080G1056 Vigna mungo HOM05D003660 ORTHO05D003415 9.2e-19 97.1 108 50.9
Atru.chr3.3157 Acer truncatum HOM05D003660 ORTHO05D003415 1.6e-18 96.3 108 49.1
Manes.04G000300 Manihot esculenta HOM05D003660 ORTHO05D003415 2.0e-18 95.9 108 50.9
Gohir.D09G097100 Gossypium hirsutum HOM05D003660 ORTHO05D003415 3.5e-18 95.1 108 52.8
Duzib170G1097 Durio zibethinus HOM05D000010 ORTHO05D005236 4.5e-18 94.7 108 52.8
Phvul.005G121700 Phaseolus vulgaris HOM05D003660 ORTHO05D003415 4.5e-18 94.7 108 51.9
Potri.016G073500 Populus trichocarpa HOM05D003660 ORTHO05D003415 4.5e-18 94.7 100 59.0
Solyc11g068760.2 Solanum lycopersicum HOM05D003660 ORTHO05D003415 4.5e-18 94.7 108 50.0
Sopen11g027470 Solanum pennellii HOM05D003660 ORTHO05D003415 4.5e-18 94.7 108 50.0
Gohir.A09G137200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 5.9e-18 94.4 108 52.8
Glyma.13G314500 Glycine max HOM05D003660 ORTHO05D003415 7.8e-18 94.0 108 50.0
Gorai.006G151200 Gossypium raimondii HOM05D003660 ORTHO05D003415 7.8e-18 94.0 108 52.8
Oeu035577.1 Olea europaea HOM05D003660 ORTHO05D003415 7.8e-18 94.0 108 50.9
Sed0020241 Sechium edule HOM05D003660 ORTHO05D003415 7.8e-18 94.0 108 52.8
HPP92_009784 Vanilla planifolia HOM05D003660 ORTHO05D003415 7.8e-18 94.0 108 50.9
Duzib093G1675 Durio zibethinus HOM05D003660 ORTHO05D003415 1.0e-17 93.6 108 50.9
Glyma.12G186952 Glycine max HOM05D003660 ORTHO05D003415 1.0e-17 93.6 108 50.0
Hund20939 Selenicereus undatus HOM05D003660 ORTHO05D003415 1.0e-17 93.6 108 51.9
TWI77G0680 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 1.0e-17 93.6 117 52.1
Migut.D02421 Erythranthe guttata HOM05D003660 ORTHO05D003415 1.7e-17 92.8 108 52.8
Potri.006G206100 Populus trichocarpa HOM05D003660 ORTHO05D003415 1.7e-17 92.8 111 53.2
Gohir.A05G078900 Gossypium hirsutum HOM05D003660 ORTHO05D003415 2.3e-17 92.4 108 53.7
Cc01_g08660 Coffea canephora HOM05D003660 ORTHO05D003415 2.9e-17 92.0 102 53.9
Rhsim03G0067700 Rhododendron simsii HOM05D003660 ORTHO05D003415 2.9e-17 92.0 112 56.2
Migut.D02405 Erythranthe guttata HOM05D003660 ORTHO05D003415 3.8e-17 91.7 108 52.8
MD11G1171800 Malus domestica HOM05D003660 ORTHO05D003415 3.8e-17 91.7 106 51.9
Potri.004G200200 Populus trichocarpa HOM05D003660 ORTHO05D003415 3.8e-17 91.7 108 50.9
Nitab4.5_0001135g0080 Nicotiana tabacum HOM05D003660 ORTHO05D003415 5.0e-17 91.3 109 51.4
MD03G1151200 Malus domestica HOM05D003660 ORTHO05D003415 6.6e-17 90.9 108 50.0
RcHm_v2.0_Chr5g0047201 Rosa chinensis HOM05D003660 ORTHO05D003415 1.1e-16 90.1 108 49.1
Aqoxy2G01022 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 1.5e-16 89.7 108 49.1
Gorai.009G083400 Gossypium raimondii HOM05D003660 ORTHO05D003415 1.5e-16 89.7 108 53.7
Cpa.g.sc195.36 Carica papaya HOM05D003660 ORTHO05D003415 1.9e-16 89.4 87 58.6
MBI17_g39787_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 2.5e-16 89.0 108 50.9
SalBow3G1900 Salvia bowleyana HOM05D003660 ORTHO05D003415 5.6e-16 87.8 101 54.5
SGA_v2.0_scaffold7G03991 Striga asiatica HOM05D003660 ORTHO05D003415 1.6e-15 86.3 93 55.9
COL.COLO4_04567 Corchorus olitorius HOM05D003660 ORTHO05D003415 2.1e-15 85.9 90 55.6
FvH4_3g25870 Fragaria vesca HOM05D003660 ORTHO05D003415 2.8e-15 85.5 108 48.1
FAN21G0895 Fragaria x ananassa HOM05D003660 ORTHO05D003415 2.8e-15 85.5 108 48.1
FAN25G0104 Fragaria x ananassa HOM05D003660 ORTHO05D003415 2.8e-15 85.5 108 48.1
AL6G33280 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 3.6e-15 85.1 109 50.5
CiPaw.14G096800 Carya illinoinensis HOM05D003660 ORTHO05D003415 4.7e-15 84.7 108 46.3
CDE04G3260 Ceratophyllum demersum HOM05D003660 ORTHO05D003415 4.7e-15 84.7 101 53.5
Sabra06G0159000 Salix brachista HOM05D003660 ORTHO05D003415 4.7e-15 84.7 128 46.9
Sp6g22960 Schrenkiella parvula HOM05D003660 ORTHO05D003415 4.7e-15 84.7 106 52.8
Lalb_Chr19g0136331 Lupinus albus HOM05D003660 ORTHO05D003415 1.0e-14 83.6 108 49.1
THA.LOC104810930 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 1.0e-14 83.6 88 55.7
Actinidia06171 Actinidia chinensis HOM05D003660 ORTHO05D003415 1.8e-14 82.8 93 57.0
Aqoxy4G02700 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 1.8e-14 82.8 99 48.5
ATR0772G050 Amborella trichopoda HOM05D003660 ORTHO05D003415 2.3e-14 82.4 76 61.8
AT5G22280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 2.3e-14 82.4 109 49.5
Prupe.6G138900 Prunus persica HOM05D003660 ORTHO05D003415 2.3e-14 82.4 90 54.4
Lalb_Chr14g0376021 Lupinus albus HOM05D003660 ORTHO05D003415 3.0e-14 82.0 109 45.0
BNapus_Darmor_BZH_scaffold_38p00770 Brassica napus HOM05D003660 ORTHO05D003415 4.0e-14 81.6 109 47.7
Carub.0006s2002 Capsella rubella HOM05D003660 ORTHO05D003415 4.0e-14 81.6 109 49.5
Thhalv10015076m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 4.0e-14 81.6 109 49.5
BcaB05g22739 Brassica carinata HOM05D003660 ORTHO05D003415 5.2e-14 81.3 109 48.6
MELO3C009511.2 Cucumis melo HOM05D003660 ORTHO05D003415 5.2e-14 81.3 108 48.1
A06p22070 Brassica napus HOM05D003660 ORTHO05D003415 6.8e-14 80.9 90 54.4
CANSAT54G1844 Cannabis sativa HOM05D003660 ORTHO05D003415 6.8e-14 80.9 110 47.3
Thhalv10010953m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 6.8e-14 80.9 110 48.2
THA.LOC104799557 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 6.8e-14 80.9 109 47.7
BcaB01g04718 Brassica carinata HOM05D003660 ORTHO05D003415 8.9e-14 80.5 110 46.4
Ca_01643_v3 Cicer arietinum L. HOM05D000010 ORTHO05D005236 8.9e-14 80.5 99 48.5
Sabra04G0135300 Salix brachista HOM05D003660 ORTHO05D003415 8.9e-14 80.5 124 44.4
unitig_22.g6156 Utricularia gibba HOM05D003660 ORTHO05D003415 8.9e-14 80.5 104 47.1
AL5G22410 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 1.2e-13 80.1 109 47.7
Carub.0005s1000 Capsella rubella HOM05D003660 ORTHO05D003415 1.2e-13 80.1 109 46.8
DCAR_020727 Daucus carota HOM05D003660 ORTHO05D003415 1.2e-13 80.1 136 42.6
FAN02G2975 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.2e-13 80.1 88 54.5
BcaC01g06594 Brassica carinata HOM05D003660 ORTHO05D003415 1.5e-13 79.7 110 46.4
C03p12270 Brassica napus HOM05D003660 ORTHO05D003415 1.5e-13 79.7 110 46.4
Zm00001eb242920 Zea mays HOM05D003660 ORTHO05D003415 1.5e-13 79.7 108 40.7
Aa31LG1G13260 Aethionema arabicum HOM05D003660 ORTHO05D003415 2.0e-13 79.3 90 52.2
BolC2t07146H Brassica oleracea HOM05D003660 ORTHO05D003415 2.0e-13 79.3 109 46.8
Zm00001eb304510 Zea mays HOM05D003660 ORTHO05D003415 2.0e-13 79.3 107 44.9
BcaC03g13871 Brassica carinata HOM05D003660 ORTHO05D003415 2.6e-13 79.0 109 46.8
CARHR104590 Cardamine hirsuta HOM05D003660 ORTHO05D003415 2.6e-13 79.0 109 45.9
Eucgr.J00533 Eucalyptus grandis HOM05D003660 ORTHO05D003415 2.6e-13 79.0 109 50.5
FAN05G5646 Fragaria x ananassa HOM05D003660 ORTHO05D003415 2.6e-13 79.0 88 53.4
FAN05G5661 Fragaria x ananassa HOM05D003660 ORTHO05D003415 2.6e-13 79.0 88 53.4
FAN14G4527 Fragaria x ananassa HOM05D003660 ORTHO05D003415 2.6e-13 79.0 88 53.4
AT3G44280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 3.4e-13 78.6 109 46.8
C02p10760 Brassica napus HOM05D003660 ORTHO05D003415 4.4e-13 78.2 109 46.8
A03p10660 Brassica napus HOM05D003660 ORTHO05D003415 5.8e-13 77.8 110 45.5
BraA03t10378Z Brassica rapa HOM05D003660 ORTHO05D003415 5.8e-13 77.8 110 45.5
MELO3C014510.2 Cucumis melo HOM05D000010 ORTHO05D005236 7.5e-13 77.4 109 45.9
TWI74G0792 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 7.5e-13 77.4 90 55.6
CsaV3_6G038470 Cucumis sativus L. HOM05D003660 ORTHO05D003415 1.3e-12 76.6 109 45.0
CsaV3_3G037680 Cucumis sativus L. HOM05D003660 ORTHO05D003415 1.7e-12 76.3 108 45.4
Sabra16G0076300 Salix brachista HOM05D003660 ORTHO05D003415 1.7e-12 76.3 91 50.5
C03p69380 Brassica napus HOM05D003660 ORTHO05D003415 2.2e-12 75.9 90 53.3
Gohir.A11G318200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 2.2e-12 75.9 108 43.5
Gohir.D11G337400 Gossypium hirsutum HOM05D003660 ORTHO05D003415 2.2e-12 75.9 108 43.5
Gorai.007G367400 Gossypium raimondii HOM05D003660 ORTHO05D003415 2.2e-12 75.9 108 43.5
Os02g0536100 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 2.2e-12 75.9 108 42.6
BraA06t25297Z Brassica rapa HOM05D003660 ORTHO05D003415 2.9e-12 75.5 92 53.3
Aa31LG4G13780 Aethionema arabicum HOM05D003660 ORTHO05D003415 4.9e-12 74.7 84 54.8
Os07g0250300 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 4.9e-12 74.7 96 51.0
BcaB08g36812 Brassica carinata HOM05D003660 ORTHO05D003415 6.4e-12 74.3 109 46.8
ClCG02G022340 Citrullus lanatus HOM05D003660 ORTHO05D003415 1.1e-11 73.6 109 45.0
Carub.0006s0515 Capsella rubella HOM05D008756 ORTHO05D003415 1.4e-11 73.2 103 46.6
FAN11G1383 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.4e-11 73.2 97 44.3
Gohir.D05G081800 Gossypium hirsutum HOM05D003660 ORTHO05D003415 2.4e-11 72.4 108 47.2
CARHR206980 Cardamine hirsuta HOM05D008756 ORTHO05D003415 3.2e-11 72.0 103 45.6
THA.LOC104826814 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 3.2e-11 72.0 102 45.1
SEGI_28618 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 4.1e-11 71.6 81 51.9
arahy.Tifrunner.gnm1.ann1.PLL1TV Arachis hypogaea HOM05D003660 ORTHO05D003415 7.0e-11 70.9 89 47.2
Os03g0836500 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 7.0e-11 70.9 93 47.3
Zm00001eb211110 Zea mays HOM05D003660 ORTHO05D003415 7.0e-11 70.9 95 48.4
Psat7g186360 Pisum sativum HOM05D003660 ORTHO05D003415 2.0e-10 69.3 93 50.5
Sp6g36600 Schrenkiella parvula HOM05D008756 ORTHO05D003415 2.0e-10 69.3 104 45.2
AL6G16290 Arabidopsis lyrata HOM05D008756 ORTHO05D003415 2.7e-10 68.9 104 46.2
Carub.0333s0001 Capsella rubella HOM05D003660 ORTHO05D003415 4.6e-10 68.2 77 54.5
AT5G06265 Arabidopsis thaliana HOM05D008756 ORTHO05D003415 7.8e-10 67.4 105 45.7
Dinv22800 Davidia involucrata HOM05D003660 ORTHO05D003415 1.0e-09 67.0 92 50.0
SGA_v2.0_scaffold295G47504 Striga asiatica HOM05D003660 ORTHO05D003415 1.3e-09 66.6 108 41.7
TWI31G1256 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 1.3e-09 66.6 108 38.9
Aa31sc52G60 Aethionema arabicum HOM05D008756 ORTHO05D003415 3.9e-09 65.1 102 42.2
Migut.N02469 Erythranthe guttata HOM05D003660 ORTHO05D003415 6.6e-09 64.3 109 38.5
BcaC01g02028 Brassica carinata HOM05D003660 ORTHO05D003415 1.5e-08 63.2 112 42.9
BolC3t19199H Brassica oleracea HOM05D003660 ORTHO05D003415 1.5e-08 63.2 112 42.9
Cc00_g18350 Coffea canephora HOM05D003660 ORTHO05D003415 2.5e-08 62.4 106 40.6
Lj3g0015124 Lotus japonicus HOM05D003660 ORTHO05D003415 2.5e-08 62.4 102 41.2
BolC9t59818H Brassica oleracea HOM05D008756 ORTHO05D003415 3.3e-08 62.0 104 41.3
arahy.Tifrunner.gnm1.ann1.W33SWH Arachis hypogaea HOM05D003660 ORTHO05D003415 5.6e-08 61.2 99 41.4
PGR119G0448 Punica granatum HOM05D003660 ORTHO05D003415 5.6e-08 61.2 108 39.8
BcaB05g22254 Brassica carinata HOM05D003660 ORTHO05D003415 7.3e-08 60.8 75 52.0
TPR.G4509 Trifolium pratense HOM05D003660 ORTHO05D003415 1.6e-07 59.7 61 54.1
SEGI_04697 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 2.1e-07 59.3 94 40.4
QL07p037620 Quercus lobata HOM05D003660 ORTHO05D003415 2.8e-07 58.9 57 61.4
BcaC06g32337 Brassica carinata HOM05D008756 ORTHO05D003415 3.6e-07 58.5 104 39.4
Sp5g16990 Schrenkiella parvula HOM05D003660 ORTHO05D003415 1.1e-06 57.0 85 44.7
BcaC06g32356 Brassica carinata HOM05D008756 ORTHO05D003415 1.8e-06 56.2 86 43.0
Pp3c15_12320 Physcomitrium patens HOM05D003660 ORTHO05D003415 2.3e-06 55.8 81 44.4
vmacro07457 Vaccinium macrocarpon HOM05D003660 ORTHO05D003415 5.2e-06 54.7 55 58.2


User provided reference genes

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