Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0024571 Helianthus annuus HOM05D004880 ORTHO05D006130 2.2e-238 828.6 409 100.0
Lsat_1_v5_gn_1_60360 Lactuca sativa HOM05D004880 ORTHO05D006130 1.1e-202 709.9 408 85.0
ECA248G1283 Erigeron canadensis HOM05D004880 ORTHO05D006130 1.9e-202 709.1 411 85.4
HanXRQChr14g0438921 Helianthus annuus HOM05D004880 ORTHO05D006130 1.0e-179 633.6 410 77.6
Dinv24034 Davidia involucrata HOM05D004880 ORTHO05D006130 5.6e-178 627.9 410 74.6
Lsat_1_v5_gn_2_57080 Lactuca sativa HOM05D004880 ORTHO05D006130 2.1e-177 625.9 410 77.1
Actinidia22070 Actinidia chinensis HOM05D004880 ORTHO05D006130 1.1e-173 613.6 406 73.9
Rhsim03G0002700 Rhododendron simsii HOM05D004880 ORTHO05D006130 4.6e-172 608.2 406 73.9
Lj1A1134T63 Lonicera japonica HOM05D004880 ORTHO05D006130 1.3e-171 606.7 407 72.0
RhsimUnG0014100 Rhododendron simsii HOM05D004880 ORTHO05D006130 2.3e-171 605.9 406 73.6
Atru.chr8.1200 Acer truncatum HOM05D004880 ORTHO05D006130 3.3e-170 602.1 407 71.0
Nitab4.5_0005082g0030 Nicotiana tabacum HOM05D004880 ORTHO05D006130 1.6e-169 599.7 410 73.2
PGR142G4320 Punica granatum HOM05D004880 ORTHO05D006130 1.6e-169 599.7 409 70.9
Prupe.7G084800 Prunus persica HOM05D004880 ORTHO05D006130 6.2e-169 597.8 410 71.2
RcHm_v2.0_Chr3g0478791 Rosa chinensis HOM05D004880 ORTHO05D006130 3.1e-168 595.5 410 71.7
GSVIVG01033434001 Vitis vinifera HOM05D004880 ORTHO05D006130 1.2e-167 593.6 410 71.7
Haze_20052 Corylus avellana HOM05D004880 ORTHO05D006130 1.5e-167 593.2 410 71.2
Duzib093G1906 Durio zibethinus HOM05D004880 ORTHO05D006130 3.4e-167 592.0 405 69.9
Nitab4.5_0002532g0010 Nicotiana tabacum HOM05D004880 ORTHO05D006130 3.4e-167 592.0 410 72.7
Haze_20059 Corylus avellana HOM05D004880 ORTHO05D006130 4.4e-167 591.7 410 71.0
Manes.08G040500 Manihot esculenta HOM05D004880 ORTHO05D006130 5.8e-167 591.3 411 70.8
Cpa.g.sc85.30 Carica papaya HOM05D004880 ORTHO05D006130 2.2e-166 589.3 410 70.0
Thecc.05G178700 Theobroma cacao HOM05D004880 ORTHO05D006130 3.8e-166 588.6 410 71.0
Gorai.006G144600 Gossypium raimondii HOM05D004880 ORTHO05D006130 4.9e-166 588.2 409 69.9
CAN.G8.1 Capsicum annuum HOM05D004880 ORTHO05D006130 1.9e-165 586.3 411 71.5
MD14G1051200 Malus domestica HOM05D004880 ORTHO05D006130 1.9e-165 586.3 410 71.0
Gohir.D09G125600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 4.2e-165 585.1 409 69.7
Nn7g35913 Nelumbo nucifera HOM05D004880 ORTHO05D006130 4.2e-165 585.1 405 70.4
Potri.016G062100 Populus trichocarpa HOM05D004880 ORTHO05D006130 4.2e-165 585.1 409 69.7
Actinidia38600 Actinidia chinensis HOM05D004880 ORTHO05D006130 5.4e-165 584.7 405 71.1
Migut.J01871 Erythranthe guttata HOM05D004880 ORTHO05D006130 5.4e-165 584.7 410 72.2
Aqoxy2G00483 Aquilegia oxysepala HOM05D004880 ORTHO05D006130 7.1e-165 584.3 410 69.8
Potri.006G196200 Populus trichocarpa HOM05D004880 ORTHO05D006130 7.1e-165 584.3 410 71.2
TAR633G2404 Trochodendron aralioides HOM05D004880 ORTHO05D006130 7.1e-165 584.3 405 69.1
Sabra16G0064000 Salix brachista HOM05D004880 ORTHO05D006130 9.3e-165 583.9 409 69.2
Duzib128G0581 Durio zibethinus HOM05D004880 ORTHO05D006130 1.2e-164 583.6 409 69.7
Gohir.A09G129600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 2.1e-164 582.8 409 69.2
QL07p025081 Quercus lobata HOM05D004880 ORTHO05D006130 2.1e-164 582.8 408 70.3
QL07p025096 Quercus lobata HOM05D004880 ORTHO05D006130 2.1e-164 582.8 408 70.3
MSTRG.26074 Avicennia marina HOM05D004880 ORTHO05D006130 3.5e-164 582.0 410 72.0
SalBow1G7250 Salvia bowleyana HOM05D004880 ORTHO05D006130 3.5e-164 582.0 402 72.6
COL.COLO4_29395 Corchorus olitorius HOM05D004880 ORTHO05D006130 4.6e-164 581.6 410 71.5
DCAR_017041 Daucus carota HOM05D004880 ORTHO05D006130 6.0e-164 581.3 410 70.2
Sabra06G0150800 Salix brachista HOM05D004880 ORTHO05D006130 6.0e-164 581.3 410 70.2
Eucgr.K01870 Eucalyptus grandis HOM05D004880 ORTHO05D006130 1.0e-163 580.5 410 70.0
CiPaw.09G027000 Carya illinoinensis HOM05D004880 ORTHO05D006130 1.3e-163 580.1 409 69.4
FvH4_6g21550 Fragaria vesca HOM05D004880 ORTHO05D006130 3.9e-163 578.6 410 69.5
FAN14G3637 Fragaria x ananassa HOM05D004880 ORTHO05D006130 3.9e-163 578.6 410 69.5
QL10p026397 Quercus lobata HOM05D004880 ORTHO05D006130 3.9e-163 578.6 404 69.6
CANSAT64G2835 Cannabis sativa HOM05D004880 ORTHO05D006130 5.1e-163 578.2 412 68.0
DCAR_013674 Daucus carota HOM05D004880 ORTHO05D006130 1.5e-162 576.6 432 67.1
MD12G1052800 Malus domestica HOM05D004880 ORTHO05D006130 2.5e-162 575.9 410 69.3
CiPaw.10G024300 Carya illinoinensis HOM05D004880 ORTHO05D006130 3.3e-162 575.5 409 69.7
Cc06_g23350 Coffea canephora HOM05D004880 ORTHO05D006130 2.1e-161 572.8 410 69.3
Ciclev10011869m.g Citrus clementina HOM05D004880 ORTHO05D006130 2.8e-161 572.4 410 68.3
TAR636G0255 Trochodendron aralioides HOM05D004880 ORTHO05D006130 3.6e-161 572.0 409 69.7
EL10Ac3g06851 Beta vulgaris HOM05D004880 ORTHO05D006130 8.1e-161 570.9 410 69.0
ClCG04G001360 Citrullus lanatus HOM05D004880 ORTHO05D006130 8.1e-161 570.9 409 68.7
AUR62015294 Chenopodium quinoa HOM05D004880 ORTHO05D006130 1.4e-160 570.1 406 68.0
Sc13g0002510 Simmondsia chinensis HOM05D004880 ORTHO05D006130 3.1e-160 568.9 405 67.9
Oeu063855.2 Olea europaea HOM05D004880 ORTHO05D006130 1.5e-159 566.6 440 66.6
TWI77G0767 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 2.0e-159 566.2 410 67.6
Thhalv10006516m.g Eutrema salsugineum HOM05D004880 ORTHO05D006130 3.4e-159 565.5 407 68.1
Manes.09G040000 Manihot esculenta HOM05D004880 ORTHO05D006130 3.4e-159 565.5 405 68.4
Sed0002439 Sechium edule HOM05D004880 ORTHO05D006130 5.8e-159 564.7 406 69.0
PGSC0003DMG400001105 Solanum tuberosum HOM05D004880 ORTHO05D006130 7.6e-159 564.3 410 69.0
Phvul.001G200400 Phaseolus vulgaris HOM05D004880 ORTHO05D006130 1.3e-158 563.5 405 67.9
Sopen03g011420 Solanum pennellii HOM05D004880 ORTHO05D006130 1.3e-158 563.5 410 68.8
SGA_v2.0_scaffold274G46503 Striga asiatica HOM05D004880 ORTHO05D006130 1.3e-158 563.5 403 69.5
MELO3C008990.2 Cucumis melo HOM05D004880 ORTHO05D006130 1.7e-158 563.1 409 68.5
Solyc03g051970.3 Solanum lycopersicum HOM05D004880 ORTHO05D006130 1.7e-158 563.1 410 68.8
TWI74G0273 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 1.7e-158 563.1 409 66.5
VMungo1383G0203 Vigna mungo HOM05D004880 ORTHO05D006130 1.7e-158 563.1 405 68.6
FAN05G5497 Fragaria x ananassa HOM05D004880 ORTHO05D006130 2.2e-158 562.8 400 69.2
CsaV3_4G031170 Cucumis sativus L. HOM05D004880 ORTHO05D006130 3.8e-158 562.0 409 67.7
FAN02G2738 Fragaria x ananassa HOM05D004880 ORTHO05D006130 4.9e-158 561.6 400 69.0
Glyma.19G204500 Glycine max HOM05D004880 ORTHO05D006130 4.9e-158 561.6 405 67.2
SalBow6G2644 Salvia bowleyana HOM05D004880 ORTHO05D006130 6.4e-158 561.2 402 68.7
Sp5g04380 Schrenkiella parvula HOM05D004880 ORTHO05D006130 8.4e-158 560.8 407 66.8
Glyma.03G207000 Glycine max HOM05D004880 ORTHO05D006130 1.1e-157 560.5 405 67.4
CSS0031126 Camellia sinensis var. sinensis HOM05D004880 ORTHO05D006130 3.2e-157 558.9 406 69.0
AT3G58490 Arabidopsis thaliana HOM05D004880 ORTHO05D006130 7.1e-157 557.8 404 67.1
Lj1g0004925 Lotus japonicus HOM05D004880 ORTHO05D006130 1.2e-156 557.0 403 68.5
FAN09G2092 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.6e-156 556.6 402 68.4
Lalb_Chr01g0017621 Lupinus albus HOM05D004880 ORTHO05D006130 7.9e-156 554.3 398 69.6
A07p24150 Brassica napus HOM05D004880 ORTHO05D006130 3.9e-155 552.0 407 66.3
CARHR168890 Cardamine hirsuta HOM05D004880 ORTHO05D006130 3.9e-155 552.0 407 66.3
BraA07t30059Z Brassica rapa HOM05D004880 ORTHO05D006130 8.7e-155 550.8 407 66.1
BcaC08g44920 Brassica carinata HOM05D004880 ORTHO05D006130 1.5e-154 550.1 407 66.1
C06p25460 Brassica napus HOM05D004880 ORTHO05D006130 1.5e-154 550.1 407 66.1
BolC6t37708H Brassica oleracea HOM05D004880 ORTHO05D006130 1.5e-154 550.1 407 66.1
Lalb_Chr25g0287641 Lupinus albus HOM05D004880 ORTHO05D006130 2.5e-154 549.3 410 66.3
Aa31LG10G13060 Aethionema arabicum HOM05D004880 ORTHO05D006130 5.6e-154 548.1 405 66.2
AL5G40260 Arabidopsis lyrata HOM05D004880 ORTHO05D006130 7.4e-154 547.7 407 66.6
THA.LOC104802772 Tarenaya hassleriana HOM05D004880 ORTHO05D006130 2.1e-153 546.2 404 67.3
Carub.0005s2524 Capsella rubella HOM05D004880 ORTHO05D006130 2.8e-153 545.8 407 66.1
Ca_09100_v3 Cicer arietinum L. HOM05D004880 ORTHO05D006130 8.1e-153 544.3 403 67.0
MBI04_g09734_MAGBIO Magnolia biondii HOM05D004880 ORTHO05D006130 1.1e-152 543.9 404 65.6
Ah.13g075550 Amaranthus hybridus HOM05D004880 ORTHO05D006130 2.4e-152 542.7 407 65.6
ECA238G1506 Erigeron canadensis HOM05D004880 ORTHO05D001620 3.1e-152 542.3 353 76.2
Lj2A362T41 Lonicera japonica HOM05D004880 ORTHO05D006130 1.5e-151 540.0 492 59.6
vmacro12554 Vaccinium macrocarpon HOM05D004880 ORTHO05D006130 7.6e-151 537.7 355 72.7
Peaxi162Scf00463g00322 Petunia axillaris HOM05D004880 ORTHO05D006130 1.7e-150 536.6 406 67.7
arahy.Tifrunner.gnm1.ann1.4QW8I5 Arachis hypogaea HOM05D004880 ORTHO05D006130 1.4e-149 533.5 405 66.4
arahy.Tifrunner.gnm1.ann1.LHW1VF Arachis hypogaea HOM05D004880 ORTHO05D006130 3.2e-149 532.3 405 65.9
TPR.G32306 Trifolium pratense HOM05D004880 ORTHO05D006130 7.1e-149 531.2 405 64.9
PSO339G2581 Papaver somniferum HOM05D004880 ORTHO05D006130 1.2e-148 530.4 403 64.5
PSO384G1868 Papaver somniferum HOM05D004880 ORTHO05D006130 1.6e-148 530.0 399 64.7
Aa31LG1G24310 Aethionema arabicum HOM05D004880 ORTHO05D006130 7.9e-148 527.7 405 64.9
TAR623G0618 Trochodendron aralioides HOM05D004880 ORTHO05D006130 7.9e-148 527.7 360 71.9
Medtr7g107270 Medicago truncatula HOM05D004880 ORTHO05D006130 1.0e-147 527.3 405 64.7
ATR0001G036 Amborella trichopoda HOM05D004880 ORTHO05D006130 1.6e-140 503.4 409 61.6
Os03g0805400 Oryza sativa ssp. japonica HOM05D004880 ORTHO05D006130 1.6e-140 503.4 408 60.8
PSO384G4146 Papaver somniferum HOM05D004880 ORTHO05D006130 2.5e-138 496.1 403 60.5
AUR62032743 Chenopodium quinoa HOM05D004880 ORTHO05D006130 7.4e-138 494.6 406 61.6
PSO339G4595 Papaver somniferum HOM05D004880 ORTHO05D006130 9.7e-138 494.2 403 60.5
HPP92_023567 Vanilla planifolia HOM05D004880 ORTHO05D006130 5.9e-135 485.0 402 58.5
Zm00001eb061460 Zea mays HOM05D004880 ORTHO05D006130 3.2e-133 479.2 407 59.0
Cfa020124 Carpinus fangiana HOM05D004880 ORTHO05D006130 4.5e-127 458.8 314 72.0
SEGI_41601 Sequoiadendron giganteum HOM05D004880 ORTHO05D006130 5.0e-126 455.3 408 55.9
HPP92_007945 Vanilla planifolia HOM05D004880 ORTHO05D006130 5.0e-126 455.3 410 56.6
SHI30063 Sapria himalayana HOM05D004880 ORTHO05D006130 2.8e-121 439.5 402 56.2
Ah.04g153030 Amaranthus hybridus HOM05D004880 ORTHO05D006130 1.3e-118 430.6 315 66.7
CDE10G0990 Ceratophyllum demersum HOM05D004880 ORTHO05D006130 7.2e-109 398.3 376 53.7
Psat3g026000 Pisum sativum HOM05D004880 ORTHO05D006130 6.3e-105 385.2 268 69.8
Zm00001eb212610 Zea mays HOM05D004880 ORTHO05D006130 3.2e-101 372.9 315 60.3
Hund19219 Selenicereus undatus HOM05D004880 ORTHO05D006130 1.6e-100 370.5 270 66.7
SMO356G0032 Selaginella moellendorffii HOM05D004880 ORTHO05D006130 5.7e-98 362.1 414 48.3
Hma1.2p1_0124F.1_g058410 Hydrangea macrophylla HOM05D004880 ORTHO05D006130 9.8e-98 361.3 267 67.4
Mapoly0023s0042 Marchantia polymorpha HOM05D004880 ORTHO05D006130 1.8e-96 357.1 419 48.0
Rhsim03G0002900 Rhododendron simsii HOM05D004880 ORTHO05D006130 2.7e-95 353.2 420 51.0
Pp3c11_15430 Physcomitrium patens HOM05D004880 ORTHO05D006130 5.9e-87 325.5 416 45.4
AagrBONN_evm.TU.Sc2ySwM_362.985 Anthoceros agrestis HOM05D004880 ORTHO05D006130 1.0e-86 324.7 417 43.6
Pp3c2_26340 Physcomitrium patens HOM05D004880 ORTHO05D006130 5.6e-77 292.4 451 41.5
Lalb_Chr20g0111081 Lupinus albus HOM05D004880 ORTHO05D006130 2.0e-74 283.9 254 59.1
Dinv16340 Davidia involucrata HOM05D004880 ORTHO05D006130 3.3e-69 266.5 161 81.4
Oeu057591.1 Olea europaea HOM05D004880 ORTHO05D006130 2.2e-65 253.8 164 75.6
Dinv16341 Davidia involucrata HOM05D004880 ORTHO05D006130 7.8e-63 245.4 173 69.9
Actinidia17290 Actinidia chinensis HOM05D000477 ORTHO05D000338 9.6e-61 238.4 176 65.3
Zm00001eb272460 Zea mays HOM05D004880 ORTHO05D006130 8.4e-57 225.3 164 62.8
HPP92_020367 Vanilla planifolia HOM05D004880 ORTHO05D006130 3.0e-54 216.9 213 52.6
FvH4_1g29340 Fragaria vesca HOM05D004880 ORTHO05D006130 2.4e-51 207.2 134 73.9
Zm00001eb359710 Zea mays HOM05D004880 ORTHO05D006130 9.0e-51 205.3 175 57.7
HPP92_020366 Vanilla planifolia HOM05D004880 ORTHO05D006130 1.2e-50 204.9 192 54.2
Lalb_Chr20g0111071 Lupinus albus HOM05D004880 ORTHO05D006130 8.4e-49 198.7 106 86.8
CBR_g27899 Chara braunii HOM05D004880 ORTHO05D006130 1.9e-48 197.6 343 35.6
RhsimUnG0012500 Rhododendron simsii HOM05D001884 ORTHO05D001890 1.5e-34 151.4 131 56.5
BcaB02g07520 Brassica carinata HOM05D004880 ORTHO05D006130 9.3e-32 142.1 104 66.3
RhsimUnG0013900 Rhododendron simsii HOM05D004880 ORTHO05D050686 1.5e-21 108.2 97 62.9
Cfa025525 Carpinus fangiana HOM05D004880 ORTHO05D125807 3.2e-16 90.5 313 27.2
RcHm_v2.0_Chr2g0108291 Rosa chinensis HOM05D004880 ORTHO05D006130 4.2e-16 90.1 70 62.9
Migut.J01865 Erythranthe guttata HOM05D004880 ORTHO05D006130 1.5e-13 81.6 57 68.4
RcHm_v2.0_Chr2g0108301 Rosa chinensis HOM05D004880 ORTHO05D050686 5.7e-13 79.7 84 53.6


User provided reference genes

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