Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0023961 Helianthus annuus HOM05D005399 ORTHO05D006347 0.0e+00 1582.0 784 100.0
HanXRQChr15g0470151 Helianthus annuus HOM05D005399 ORTHO05D006347 0.0e+00 1194.5 800 76.1
Lsat_1_v5_gn_7_13681 Lactuca sativa HOM05D005399 ORTHO05D006347 9.8e-264 913.7 772 64.2
ECA236G2916 Erigeron canadensis HOM05D005399 ORTHO05D006347 1.3e-255 886.7 790 61.4
QL09p007265 Quercus lobata HOM05D005399 ORTHO05D006347 2.2e-215 753.1 911 47.6
Ciclev10018828m.g Citrus clementina HOM05D005399 ORTHO05D006347 1.2e-208 730.7 861 47.7
GSVIVG01038634001 Vitis vinifera HOM05D005399 ORTHO05D006347 1.7e-207 726.9 845 49.6
Thecc.03G207700 Theobroma cacao HOM05D005399 ORTHO05D006347 3.8e-207 725.7 922 46.3
Cfa016169 Carpinus fangiana HOM05D005399 ORTHO05D006347 4.3e-203 712.2 903 46.1
MD04G1021200 Malus domestica HOM05D005399 ORTHO05D006347 9.6e-203 711.1 846 48.5
Hma1.2p1_0094F.1_g047320 Hydrangea macrophylla HOM05D005399 ORTHO05D006347 2.8e-202 709.5 1111 40.9
TAR629G1213 Trochodendron aralioides HOM05D005399 ORTHO05D006347 2.9e-199 699.5 1117 41.1
Gorai.004G124900 Gossypium raimondii HOM05D005399 ORTHO05D006347 1.1e-198 697.6 931 45.2
MD10G1005500 Malus domestica HOM05D005399 ORTHO05D006347 1.9e-198 696.8 848 48.2
Cc11_g00230 Coffea canephora HOM05D005399 ORTHO05D006347 3.2e-198 696.0 879 46.0
Gohir.D08G116000 Gossypium hirsutum HOM05D005399 ORTHO05D006347 5.5e-198 695.3 931 45.1
RcHm_v2.0_Chr4g0412561 Rosa chinensis HOM05D005399 ORTHO05D006347 7.1e-198 694.9 877 46.2
Sabra12G0011800 Salix brachista HOM05D005399 ORTHO05D006347 7.1e-198 694.9 896 44.6
DCAR_008979 Daucus carota HOM05D005399 ORTHO05D006347 3.5e-197 692.6 905 44.4
Sabra05G0139800 Salix brachista HOM05D005399 ORTHO05D006347 4.6e-197 692.2 896 44.8
CANSAT21G1620 Cannabis sativa HOM05D005399 ORTHO05D006347 6.1e-197 691.8 872 46.7
TWI39G1122 Tripterygium wilfordii HOM05D005399 ORTHO05D006347 3.9e-196 689.1 920 43.7
vmacro06433 Vaccinium macrocarpon HOM05D005399 ORTHO05D006347 6.7e-196 688.3 1112 39.3
Potri.012G021900 Populus trichocarpa HOM05D005399 ORTHO05D006347 4.3e-195 685.6 898 44.5
FvH4_4g12930 Fragaria vesca HOM05D005399 ORTHO05D006347 1.4e-193 680.6 881 45.4
Sopen06g030090 Solanum pennellii HOM05D005399 ORTHO05D006347 1.4e-193 680.6 877 45.0
FAN12G2064 Fragaria x ananassa HOM05D005399 ORTHO05D006347 2.4e-193 679.9 881 45.3
Haze_00285 Corylus avellana HOM05D005399 ORTHO05D006347 3.4e-192 676.0 900 45.2
FAN07G0819 Fragaria x ananassa HOM05D005399 ORTHO05D006347 1.0e-191 674.5 881 45.3
CAN.G65.216 Capsicum annuum HOM05D005399 ORTHO05D006347 1.3e-191 674.1 879 45.2
Actinidia34263 Actinidia chinensis HOM05D005399 ORTHO05D006347 3.8e-191 672.5 1108 39.6
Rhsim03G0214700 Rhododendron simsii HOM05D005399 ORTHO05D006347 1.9e-190 670.2 870 46.6
Migut.F00156 Erythranthe guttata HOM05D005399 ORTHO05D006347 4.2e-190 669.1 890 44.5
PGR102G0827 Punica granatum HOM05D005399 ORTHO05D006347 7.2e-190 668.3 915 43.4
MSTRG.26983 Avicennia marina HOM05D005399 ORTHO05D006347 2.1e-189 666.8 891 44.6
CsaV3_2G029520 Cucumis sativus L. HOM05D005399 ORTHO05D006347 1.4e-188 664.1 876 45.2
SGA_v2.0_scaffold18G08460 Striga asiatica HOM05D005399 ORTHO05D006347 3.9e-188 662.5 886 43.5
Atru.chr12.2405 Acer truncatum HOM05D005399 ORTHO05D006347 6.7e-188 661.8 876 45.7
Sc19g0000620 Simmondsia chinensis HOM05D005399 ORTHO05D006347 1.5e-187 660.6 924 42.5
ClCG08G014290 Citrullus lanatus HOM05D005399 ORTHO05D006347 1.4e-185 654.1 861 44.5
Nn3g18028 Nelumbo nucifera HOM05D005399 ORTHO05D006347 4.1e-185 652.5 1097 38.0
Medtr5g077160 Medicago truncatula HOM05D005399 ORTHO05D006347 1.4e-182 644.0 853 45.5
Sed0017875 Sechium edule HOM05D005399 ORTHO05D006347 1.9e-182 643.7 870 43.9
Prupe.1G170200 Prunus persica HOM05D005399 ORTHO05D006347 5.1e-180 635.6 774 47.8
SalBow6G2741 Salvia bowleyana HOM05D005399 ORTHO05D006347 5.1e-180 635.6 882 43.5
Medtr1g059090 Medicago truncatula HOM05D005399 ORTHO05D006347 2.0e-179 633.6 852 44.8
CARHR158370 Cardamine hirsuta HOM05D005399 ORTHO05D006347 1.3e-178 630.9 901 40.6
Aqoxy5G00909 Aquilegia oxysepala HOM05D005399 ORTHO05D006347 3.7e-178 629.4 1103 37.6
Lj5g0008235 Lotus japonicus HOM05D005399 ORTHO05D006347 1.1e-177 627.9 850 44.7
TPR.G18894 Trifolium pratense HOM05D005399 ORTHO05D006347 9.1e-177 624.8 853 44.8
Glyma.10G094100 Glycine max HOM05D005399 ORTHO05D006347 2.6e-176 623.2 835 43.7
Lj4g0025583 Lotus japonicus HOM05D005399 ORTHO05D006347 7.7e-176 621.7 852 44.0
SalBow1G5593 Salvia bowleyana HOM05D005399 ORTHO05D006347 7.7e-176 621.7 881 43.0
AL5G29160 Arabidopsis lyrata HOM05D005399 ORTHO05D006347 1.3e-175 620.9 901 40.7
Carub.0005s1567 Capsella rubella HOM05D005399 ORTHO05D006347 6.5e-175 618.6 899 41.0
SalBow1G2085 Salvia bowleyana HOM05D005399 ORTHO05D006347 8.5e-175 618.2 850 43.6
Ca_27344_v3 Cicer arietinum L. HOM05D005399 ORTHO05D006347 5.5e-174 615.5 842 45.2
Phvul.004G128800 Phaseolus vulgaris HOM05D005399 ORTHO05D006347 7.2e-174 615.1 841 42.9
Lalb_Chr03g0034521 Lupinus albus HOM05D005399 ORTHO05D006347 2.7e-173 613.2 839 43.5
Sp5g12670 Schrenkiella parvula HOM05D005399 ORTHO05D006347 2.7e-173 613.2 898 40.3
COL.COLO4_14362 Corchorus olitorius HOM05D005399 ORTHO05D006347 4.7e-173 612.5 860 43.7
Aa31LG4G17950 Aethionema arabicum HOM05D005399 ORTHO05D006347 8.0e-173 611.7 880 40.2
BraA01t02386Z Brassica rapa HOM05D005399 ORTHO05D006347 3.0e-172 609.8 895 40.7
EL10Ac3g05189 Beta vulgaris HOM05D005399 ORTHO05D006347 3.9e-172 609.4 1078 36.9
C01p30860 Brassica napus HOM05D005399 ORTHO05D006347 1.1e-171 607.8 895 40.3
BolC1t03020H Brassica oleracea HOM05D005399 ORTHO05D006347 1.1e-171 607.8 895 40.4
A01p24740 Brassica napus HOM05D005399 ORTHO05D006347 2.0e-171 607.1 893 40.8
Oeu037969.1 Olea europaea HOM05D005399 ORTHO05D006347 9.7e-171 604.7 832 43.0
THA.LOC104803340 Tarenaya hassleriana HOM05D005399 ORTHO05D006347 1.8e-169 600.5 910 39.9
Lj3C896G2 Lonicera japonica HOM05D005399 ORTHO05D006347 1.6e-168 597.4 1053 37.9
Manes.01G042700 Manihot esculenta HOM05D005399 ORTHO05D006347 4.0e-164 582.8 867 43.0
arahy.Tifrunner.gnm1.ann1.CBX7CP Arachis hypogaea HOM05D005399 ORTHO05D006347 3.1e-161 573.2 856 41.9
arahy.Tifrunner.gnm1.ann1.MB6KVE Arachis hypogaea HOM05D005399 ORTHO05D006347 1.2e-160 571.2 854 42.5
MELO3C011011.2 Cucumis melo HOM05D005399 ORTHO05D006347 1.7e-159 567.4 868 41.2
Thhalv10010115m.g Eutrema salsugineum HOM05D005399 ORTHO05D006347 1.9e-158 563.9 900 39.3
SalBow1G6622 Salvia bowleyana HOM05D005399 ORTHO05D006347 3.6e-157 559.7 831 41.5
Psat2g044800 Pisum sativum HOM05D005399 ORTHO05D006347 1.0e-156 558.1 860 42.3
CiPaw.05G203600 Carya illinoinensis HOM05D005399 ORTHO05D006347 4.5e-152 542.7 630 47.1
Nitab4.5_0000271g0170 Nicotiana tabacum HOM05D005399 ORTHO05D006347 1.1e-150 538.1 771 42.7
Duzib205G1241 Durio zibethinus HOM05D005399 ORTHO05D006347 2.5e-150 537.0 880 39.3
AUR62035614 Chenopodium quinoa HOM05D005399 ORTHO05D006347 1.8e-148 530.8 1020 35.0
Gohir.A08G104400 Gossypium hirsutum HOM05D005399 ORTHO05D006347 3.2e-145 520.0 652 47.2
Os01g0702400 Oryza sativa ssp. japonica HOM05D005399 ORTHO05D006347 3.2e-145 520.0 955 35.2
Glyma.14G156200 Glycine max HOM05D005399 ORTHO05D006347 5.4e-145 519.2 745 42.4
Nitab4.5_0002184g0080 Nicotiana tabacum HOM05D005399 ORTHO05D006347 9.5e-142 508.4 752 41.8
PSO782G2701 Papaver somniferum HOM05D005399 ORTHO05D006347 1.1e-137 495.0 1049 35.1
AUR62006012 Chenopodium quinoa HOM05D005399 ORTHO05D006347 4.6e-136 489.6 710 42.1
arahy.Tifrunner.gnm1.ann1.61K3C5 Arachis hypogaea HOM05D005399 ORTHO05D006347 3.3e-134 483.4 792 40.5
VMungo1080G0063 Vigna mungo HOM05D005399 ORTHO05D006347 2.1e-133 480.7 1067 32.9
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 3.4e-131 473.4 741 41.2
ATR1089G058 Amborella trichopoda HOM05D005399 ORTHO05D006347 9.8e-131 471.9 963 34.2
Eucgr.H04750 Eucalyptus grandis HOM05D005399 ORTHO05D006347 9.8e-131 471.9 503 49.7
unitig_749.g13730 Utricularia gibba HOM05D005399 ORTHO05D006347 1.2e-125 454.9 843 36.5
Dinv29218 Davidia involucrata HOM05D005399 ORTHO05D006347 4.6e-120 436.4 476 51.5
PGSC0003DMG400005917 Solanum tuberosum HOM05D005399 ORTHO05D006347 5.2e-116 422.9 490 48.6
AT3G49400 Arabidopsis thaliana HOM05D005399 ORTHO05D006347 4.4e-115 419.9 542 42.4
Cpa.g.sc13.113 Carica papaya HOM05D005399 ORTHO05D006347 9.3e-113 412.1 706 39.2
Ah.09g232770 Amaranthus hybridus HOM05D005399 ORTHO05D006347 6.6e-111 406.0 593 40.1
arahy.Tifrunner.gnm1.ann1.GD33A2 Arachis hypogaea HOM05D005399 ORTHO05D006347 1.4e-108 398.3 547 43.5
CDE04G3617 Ceratophyllum demersum HOM05D005399 ORTHO05D006347 3.9e-103 380.2 949 30.8
Pp3c18_13210 Physcomitrium patens HOM05D005399 ORTHO05D006347 8.7e-103 379.0 933 31.0
Hund09706 Selenicereus undatus HOM05D005399 ORTHO05D006347 8.7e-103 379.0 721 34.8
VMungo0464G0254 Vigna mungo HOM05D005399 ORTHO05D006347 9.6e-102 375.6 508 43.7
SMO170G0037 Selaginella moellendorffii HOM05D005399 ORTHO05D006347 1.1e-97 362.1 923 29.6
Zm00001eb062490 Zea mays HOM05D005399 ORTHO05D006347 6.0e-96 356.3 565 39.3
Mapoly0079s0055 Marchantia polymorpha HOM05D005399 ORTHO05D006347 1.3e-77 295.4 656 31.2
Zm00001eb211870 Zea mays HOM05D005399 ORTHO05D006347 8.5e-74 282.7 490 37.3
Dinv29217 Davidia involucrata HOM05D005399 ORTHO05D006347 4.8e-69 266.9 198 66.7
PSO063G2915 Papaver somniferum HOM05D005399 ORTHO05D006347 2.0e-67 261.5 675 30.8
CSS0012529 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 1.9e-65 255.0 208 59.6
Eucgr.H04749 Eucalyptus grandis HOM05D005399 ORTHO05D006347 2.7e-64 251.1 377 43.2
arahy.Tifrunner.gnm1.ann1.JN7TNN Arachis hypogaea HOM05D005399 ORTHO05D006347 2.3e-63 248.1 402 40.5
Dinv07613 Davidia involucrata HOM05D005399 ORTHO05D006347 2.3e-63 248.1 160 73.1
AagrBONN_evm.TU.Sc2ySwM_117.1095 Anthoceros agrestis HOM05D005399 ORTHO05D006347 1.9e-57 228.4 835 26.0
Peaxi162Scf00526g00518 Petunia axillaris HOM05D005399 ORTHO05D006347 6.7e-55 219.9 370 38.6
CSS0044981 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 2.6e-54 218.0 244 51.6
Peaxi162Scf00526g00516 Petunia axillaris HOM05D005399 ORTHO05D006347 1.3e-53 215.7 205 54.1
Gohir.A08G105050 Gossypium hirsutum HOM05D005399 ORTHO05D006347 1.2e-51 209.1 188 52.7
SHI24245 Sapria himalayana HOM05D005399 ORTHO05D006347 1.7e-50 205.3 361 37.4
Solyc06g073690.2 Solanum lycopersicum HOM05D005399 ORTHO05D006347 2.9e-50 204.5 198 54.5
BcaB05g23117 Brassica carinata HOM05D005399 ORTHO05D006347 7.0e-44 183.3 190 48.9
BcaC09g49949 Brassica carinata HOM05D005399 ORTHO05D006347 2.5e-41 174.9 289 39.1
SHI24147 Sapria himalayana HOM05D005399 ORTHO05D006347 3.7e-37 161.0 358 34.1
SEGI_05702 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 5.0e-34 150.6 269 36.1
arahy.Tifrunner.gnm1.ann1.QKC624 Arachis hypogaea HOM05D005399 ORTHO05D006347 1.4e-31 142.5 564 26.4
CBR_g20108 Chara braunii HOM05D001969 ORTHO05D003463 3.0e-31 141.4 428 29.7
BcaC09g49950 Brassica carinata HOM05D005399 ORTHO05D006347 2.9e-29 134.8 109 56.9
HPP92_021257 Vanilla planifolia HOM05D005399 ORTHO05D006347 2.9e-29 134.8 311 32.2
MD10G1005800 Malus domestica HOM05D005399 ORTHO05D006347 3.6e-24 117.9 82 61.0
SHI24234 Sapria himalayana HOM05D005399 ORTHO05D006347 6.4e-21 107.1 116 50.9
SEGI_00776 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 7.0e-20 103.6 96 50.0
Psat6g243120 Pisum sativum HOM05D005399 ORTHO05D006347 2.5e-17 95.1 200 33.5
Medtr1g085950 Medicago truncatula HOM05D005399 ORTHO05D006347 4.4e-14 84.3 84 54.8
MCO09G305 Micromonas commoda HOM05D005399 ORTHO05D006347 8.6e-10 70.1 153 33.3
MBI17_g18936_MAGBIO Magnolia biondii HOM05D005399 ORTHO05D006347 1.1e-09 69.7 126 36.5
EL10As6g23691 Beta vulgaris HOM05D005399 ORTHO05D006347 9.9e-06 56.6 108 29.6


User provided reference genes

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