Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0023651 Helianthus annuus HOM05D005420 ORTHO05D006524 2.9e-140 501.9 259 100.0
HanXRQChr11g0343501 Helianthus annuus HOM05D005420 ORTHO05D006524 1.3e-116 423.3 261 87.0
ECA248G1232 Erigeron canadensis HOM05D005420 ORTHO05D006524 5.6e-115 417.9 267 84.6
Lsat_1_v5_gn_1_76981 Lactuca sativa HOM05D005420 ORTHO05D006524 1.1e-113 413.7 268 82.8
Cc03_g15990 Coffea canephora HOM05D005420 ORTHO05D006524 5.1e-100 368.2 280 71.4
Dinv33245 Davidia involucrata HOM05D005420 ORTHO05D006524 7.3e-99 364.4 222 86.5
CiPaw.02G124600 Carya illinoinensis HOM05D005420 ORTHO05D006524 3.6e-98 362.1 224 82.6
RcHm_v2.0_Chr2g0084451 Rosa chinensis HOM05D005420 ORTHO05D006524 6.2e-98 361.3 223 82.5
arahy.Tifrunner.gnm1.ann1.D6NWCJ Arachis hypogaea HOM05D005420 ORTHO05D006524 1.1e-97 360.5 237 81.4
arahy.Tifrunner.gnm1.ann1.EMGW5K Arachis hypogaea HOM05D005420 ORTHO05D006524 1.1e-97 360.5 237 81.4
MSTRG.24552 Avicennia marina HOM05D005420 ORTHO05D006524 1.1e-97 360.5 271 74.2
Atru.chr12.1712 Acer truncatum HOM05D005420 ORTHO05D006524 2.4e-97 359.4 224 82.6
Ciclev10012405m.g Citrus clementina HOM05D005420 ORTHO05D006524 3.1e-97 359.0 277 71.1
SalBow3G4646 Salvia bowleyana HOM05D005420 ORTHO05D006524 4.0e-97 358.6 258 74.4
CSS0017727 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 6.8e-97 357.8 296 68.6
CANSAT56G1087 Cannabis sativa HOM05D005420 ORTHO05D006524 8.9e-97 357.5 205 89.3
CiPaw.01G201600 Carya illinoinensis HOM05D005420 ORTHO05D006524 1.2e-96 357.1 214 84.6
Nitab4.5_0008205g0010 Nicotiana tabacum HOM05D005420 ORTHO05D006524 1.2e-96 357.1 240 77.9
CSS0022736 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 2.0e-96 356.3 220 84.5
Nitab4.5_0000013g0040 Nicotiana tabacum HOM05D005420 ORTHO05D006524 2.0e-96 356.3 235 78.7
Solyc08g015620.3 Solanum lycopersicum HOM05D005420 ORTHO05D006524 2.0e-96 356.3 206 87.4
Sopen08g005610 Solanum pennellii HOM05D005420 ORTHO05D006524 2.0e-96 356.3 206 87.4
Eucgr.H01455 Eucalyptus grandis HOM05D005420 ORTHO05D006524 2.6e-96 355.9 224 81.2
FvH4_1g00160 Fragaria vesca HOM05D005420 ORTHO05D006524 5.8e-96 354.8 264 72.7
FAN28G0609 Fragaria x ananassa HOM05D005420 ORTHO05D006524 5.8e-96 354.8 264 72.7
Lj4g0016379 Lotus japonicus HOM05D005420 ORTHO05D006524 7.6e-96 354.4 231 80.1
Prupe.7G269700 Prunus persica HOM05D005420 ORTHO05D006524 9.9e-96 354.0 285 70.2
DCAR_005460 Daucus carota HOM05D005420 ORTHO05D006524 1.3e-95 353.6 259 75.7
FAN26G3138 Fragaria x ananassa HOM05D005420 ORTHO05D006524 1.3e-95 353.6 264 72.3
QL10p064332 Quercus lobata HOM05D005420 ORTHO05D006524 1.3e-95 353.6 244 77.9
TAR365G1242 Trochodendron aralioides HOM05D005420 ORTHO05D006524 1.3e-95 353.6 247 75.7
MD00G1087500 Malus domestica HOM05D005420 ORTHO05D006524 1.7e-95 353.2 253 76.7
Cpa.g.sc151.6 Carica papaya HOM05D005420 ORTHO05D006524 2.2e-95 352.8 205 87.8
unitig_27.g25143 Utricularia gibba HOM05D005420 ORTHO05D006524 2.9e-95 352.4 214 83.6
TAR636G0539 Trochodendron aralioides HOM05D005420 ORTHO05D006524 3.8e-95 352.1 260 74.6
Cfa008513 Carpinus fangiana HOM05D005420 ORTHO05D006524 8.4e-95 350.9 214 83.2
Peaxi162Scf01205g00032 Petunia axillaris HOM05D005420 ORTHO05D006524 8.4e-95 350.9 265 72.8
Potri.013G084300 Populus trichocarpa HOM05D005420 ORTHO05D006524 8.4e-95 350.9 237 75.5
Glyma.17G000800 Glycine max HOM05D005420 ORTHO05D006524 1.4e-94 350.1 225 80.4
MD15G1143300 Malus domestica HOM05D005420 ORTHO05D006524 1.4e-94 350.1 240 79.2
Thecc.05G186000 Theobroma cacao HOM05D005420 ORTHO05D006524 1.4e-94 350.1 269 71.7
FAN23G1410 Fragaria x ananassa HOM05D005420 ORTHO05D006524 1.9e-94 349.7 264 72.7
Sed0010932 Sechium edule HOM05D005420 ORTHO05D006524 1.9e-94 349.7 201 86.6
Migut.G00921 Erythranthe guttata HOM05D005420 ORTHO05D006524 2.4e-94 349.4 200 87.5
TWI36G0345 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 2.4e-94 349.4 214 82.7
ClCG09G014850 Citrullus lanatus HOM05D005420 ORTHO05D006524 3.2e-94 349.0 201 87.6
Duzib177G0155 Durio zibethinus HOM05D005420 ORTHO05D006524 3.2e-94 349.0 271 71.2
CsaV3_7G022350 Cucumis sativus L. HOM05D005420 ORTHO05D006524 4.2e-94 348.6 204 85.8
Glyma.07G273700 Glycine max HOM05D005420 ORTHO05D006524 4.2e-94 348.6 227 81.1
PGR119G0486 Punica granatum HOM05D005420 ORTHO05D006524 5.4e-94 348.2 193 90.7
GSVIVG01038249001 Vitis vinifera HOM05D005420 ORTHO05D006524 1.2e-93 347.1 205 87.3
Lj6C285T2 Lonicera japonica HOM05D005420 ORTHO05D006524 1.6e-93 346.7 195 91.8
Sabra13G0078900 Salix brachista HOM05D005420 ORTHO05D006524 2.1e-93 346.3 237 74.7
Gohir.A02G106300 Gossypium hirsutum HOM05D005420 ORTHO05D006524 4.6e-93 345.1 271 70.8
MBI07_g10354_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 6.0e-93 344.7 237 76.4
Gohir.D03G071700 Gossypium hirsutum HOM05D005420 ORTHO05D006524 7.8e-93 344.4 274 70.8
AUR62023710 Chenopodium quinoa HOM05D005420 ORTHO05D006524 1.0e-92 344.0 200 85.5
BcaB06g29350 Brassica carinata HOM05D005420 ORTHO05D006524 1.3e-92 343.6 219 79.5
BolC4t22118H Brassica oleracea HOM05D005420 ORTHO05D006524 1.3e-92 343.6 206 84.5
PSO675G2924 Papaver somniferum HOM05D005420 ORTHO05D006524 1.3e-92 343.6 220 80.5
PSO732G0217 Papaver somniferum HOM05D005420 ORTHO05D006524 1.3e-92 343.6 220 80.5
Phvul.003G074600 Phaseolus vulgaris HOM05D005420 ORTHO05D006524 1.3e-92 343.6 227 79.7
unitig_699.g19464 Utricularia gibba HOM05D005420 ORTHO05D006524 1.3e-92 343.6 193 88.6
Aqoxy1G01859 Aquilegia oxysepala HOM05D005420 ORTHO05D006524 1.7e-92 343.2 301 66.8
Gorai.003G088300 Gossypium raimondii HOM05D005420 ORTHO05D006524 1.7e-92 343.2 274 70.8
VMungo1215G3385 Vigna mungo HOM05D005420 ORTHO05D006524 1.7e-92 343.2 294 67.3
EL10Ac3g06165 Beta vulgaris HOM05D005420 ORTHO05D006524 2.3e-92 342.8 205 83.9
Aa31LG1G25640 Aethionema arabicum HOM05D005420 ORTHO05D006524 3.0e-92 342.4 192 89.1
A03p24600 Brassica napus HOM05D005420 ORTHO05D006524 3.9e-92 342.0 219 79.5
AUR62002482 Chenopodium quinoa HOM05D005420 ORTHO05D006524 3.9e-92 342.0 193 87.6
THA.LOC104802345 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 5.1e-92 341.7 204 83.8
Actinidia34566 Actinidia chinensis HOM05D005420 ORTHO05D006524 6.6e-92 341.3 255 74.5
A05p04100 Brassica napus HOM05D005420 ORTHO05D006524 8.7e-92 340.9 191 88.5
C04p04880 Brassica napus HOM05D005420 ORTHO05D006524 8.7e-92 340.9 272 69.9
BraA05t19397Z Brassica rapa HOM05D005420 ORTHO05D006524 8.7e-92 340.9 191 88.5
Manes.12G003300 Manihot esculenta HOM05D005420 ORTHO05D006524 8.7e-92 340.9 280 67.9
BcaC02g12350 Brassica carinata HOM05D005420 ORTHO05D006524 1.1e-91 340.5 272 71.0
AL4G42820 Arabidopsis lyrata HOM05D005420 ORTHO05D006524 1.9e-91 339.7 192 87.5
AT2G43945 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 1.9e-91 339.7 192 87.5
Carub.0004s2651 Capsella rubella HOM05D005420 ORTHO05D006524 1.9e-91 339.7 192 87.5
Thhalv10001571m.g Eutrema salsugineum HOM05D005420 ORTHO05D006524 1.9e-91 339.7 192 87.5
C03p29330 Brassica napus HOM05D005420 ORTHO05D006524 2.5e-91 339.3 263 71.5
BolC3t15280H Brassica oleracea HOM05D005420 ORTHO05D006524 2.5e-91 339.3 263 71.5
Ah.07g203200 Amaranthus hybridus HOM05D005420 ORTHO05D006524 3.3e-91 339.0 276 69.2
CARHR139120 Cardamine hirsuta HOM05D005420 ORTHO05D006524 3.3e-91 339.0 192 87.5
Duzib128G1088 Durio zibethinus HOM05D005420 ORTHO05D006524 5.6e-91 338.2 192 88.0
vmacro00721 Vaccinium macrocarpon HOM05D005420 ORTHO05D006524 1.2e-90 337.0 253 74.7
BcaB02g08884 Brassica carinata HOM05D005420 ORTHO05D006524 1.6e-90 336.7 187 88.8
SGA_v2.0_scaffold12G06218 Striga asiatica HOM05D005420 ORTHO05D006524 1.6e-90 336.7 229 76.9
Rhsim09G0003700 Rhododendron simsii HOM05D005420 ORTHO05D006524 2.1e-90 336.3 284 69.0
GSVIVG01026140001 Vitis vinifera HOM05D005420 ORTHO05D006524 2.1e-90 336.3 214 80.4
CDE09G0694 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 2.8e-90 335.9 193 87.0
BraA03t11665Z Brassica rapa HOM05D005420 ORTHO05D006524 4.7e-90 335.1 192 85.9
ATR0743G098 Amborella trichopoda HOM05D005420 ORTHO05D006524 6.2e-90 334.7 237 73.0
Actinidia18399 Actinidia chinensis HOM05D005420 ORTHO05D006524 1.1e-89 334.0 280 69.3
Aa31LG10G14100 Aethionema arabicum HOM05D005420 ORTHO05D006524 1.1e-89 334.0 282 65.6
THA.LOC104804283 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 1.8e-89 333.2 204 83.3
Carub.0005s2660 Capsella rubella HOM05D005420 ORTHO05D006524 6.9e-89 331.3 187 87.2
TWI36G1305 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 2.0e-88 329.7 213 79.8
Zm00001eb159810 Zea mays HOM05D005420 ORTHO05D006524 2.0e-88 329.7 212 79.7
HPP92_024700 Vanilla planifolia HOM05D005420 ORTHO05D006524 2.6e-88 329.3 193 82.9
Os01g0338600 Oryza sativa ssp. japonica HOM05D005420 ORTHO05D006524 3.4e-88 328.9 215 78.6
AT3G59870 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 4.9e-87 325.1 187 85.6
Psat4g001320 Pisum sativum HOM05D005420 ORTHO05D006524 3.2e-86 322.4 268 68.3
Pp3c8_21410 Physcomitrium patens HOM05D005420 ORTHO05D006524 6.0e-85 318.2 230 71.3
Sp4g26040 Schrenkiella parvula HOM05D005420 ORTHO05D006524 1.7e-84 316.6 241 70.5
SEGI_26827 Sequoiadendron giganteum HOM05D005420 ORTHO05D006524 1.5e-83 313.5 203 80.8
Mapoly0136s0029 Marchantia polymorpha HOM05D005420 ORTHO05D006524 1.9e-83 313.2 222 74.3
SMO367G0538 Selaginella moellendorffii HOM05D005420 ORTHO05D006524 1.3e-82 310.5 187 82.9
Pp3c24_16460 Physcomitrium patens HOM05D005420 ORTHO05D006524 2.8e-82 309.3 188 82.4
Haze_11131 Corylus avellana HOM05D005420 ORTHO05D006524 1.2e-77 293.9 341 51.9
Migut.N03031 Erythranthe guttata HOM05D005420 ORTHO05D006524 4.6e-77 292.0 263 66.2
TPR.G6015 Trifolium pratense HOM05D005420 ORTHO05D006524 1.3e-76 290.4 203 77.3
Nn7g37463 Nelumbo nucifera HOM05D005420 ORTHO05D006524 4.8e-74 282.0 212 73.1
Manes.13G003200 Manihot esculenta HOM05D005420 ORTHO05D006524 3.1e-73 279.3 157 89.8
Dinv24753 Davidia involucrata HOM05D005420 ORTHO05D006524 4.0e-73 278.9 205 76.6
Nn3g18334 Nelumbo nucifera HOM05D005420 ORTHO05D006524 6.0e-69 265.0 166 81.9
Sc25g0003040 Simmondsia chinensis HOM05D005420 ORTHO05D006524 1.3e-68 263.8 158 82.9
MCO05G102 Micromonas commoda HOM05D005420 ORTHO05D006524 2.1e-66 256.5 160 78.1
Hund22588 Selenicereus undatus HOM05D005420 ORTHO05D006524 4.8e-66 255.4 154 82.5
Medtr4g134910 Medicago truncatula HOM05D005420 ORTHO05D006524 8.2e-66 254.6 146 87.0
Lalb_Chr18g0044961 Lupinus albus HOM05D005420 ORTHO05D006524 5.3e-65 251.9 134 94.8
Cre16.g676450 Chlamydomonas reinhardtii HOM05D005420 ORTHO05D006524 8.4e-63 244.6 192 66.7
Atru.chr12.1711 Acer truncatum HOM05D005420 ORTHO05D006524 1.1e-59 234.2 193 68.9
PRCOL_00006877 Prasinoderma coloniale HOM05D005420 ORTHO05D006524 1.9e-59 233.4 160 70.6
Zm00001eb356860 Zea mays HOM05D005420 ORTHO05D006524 1.9e-59 233.4 212 61.8
Oeu022910.1 Olea europaea HOM05D005420 ORTHO05D006524 8.2e-58 228.0 136 84.6
Ca_13540_v3 Cicer arietinum L. HOM05D005420 ORTHO05D006524 8.8e-52 208.0 200 60.5
AagrBONN_evm.TU.Sc2ySwM_228.1821 Anthoceros agrestis HOM05D005420 ORTHO05D006524 1.9e-46 190.3 133 72.2
Sed0016168 Sechium edule HOM05D005420 ORTHO05D006524 1.9e-38 163.7 90 92.2
MBI07_g42072_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 2.7e-37 159.8 89 88.8
Pp3c20_1670 Physcomitrium patens HOM05D005420 ORTHO05D006524 1.7e-34 150.6 161 52.2
CDE02G3676 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 2.6e-32 143.3 154 55.2
Eucgr.L00810 Eucalyptus grandis HOM05D005420 ORTHO05D006524 2.1e-29 133.7 78 82.1
Eucgr.H01440 Eucalyptus grandis HOM05D005420 ORTHO05D006524 1.3e-26 124.4 127 54.3
Lsat_1_v5_gn_1_75001 Lactuca sativa HOM05D005420 ORTHO05D006524 2.7e-24 116.7 78 73.1
Lsat_1_v5_gn_5_160100 Lactuca sativa HOM05D005420 ORTHO05D006524 1.1e-22 111.3 78 69.2
MSTRG.9265 Avicennia marina HOM05D005420 ORTHO05D006524 1.8e-20 104.0 85 63.5
CBR_g10867 Chara braunii HOM05D005420 ORTHO05D006524 1.4e-17 94.4 73 63.0
Lalb_Chr18g0044971 Lupinus albus HOM05D005420 ORTHO05D006524 1.6e-08 64.3 46 63.0
Sed0003231 Sechium edule HOM05D005420 ORTHO05D006524 1.6e-08 64.3 47 59.6


User provided reference genes

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