Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0023481 Helianthus annuus HOM05D006266 ORTHO05D008016 0.0e+00 1318.9 633 100.0
Lsat_1_v5_gn_1_77821 Lactuca sativa HOM05D006266 ORTHO05D008016 0.0e+00 1086.2 638 81.7
ECA248G0977 Erigeron canadensis HOM05D006266 ORTHO05D008016 4.0e-300 1034.2 514 93.4
Dinv44175 Davidia involucrata HOM05D006266 ORTHO05D008016 1.6e-288 995.7 585 80.3
CANSAT78G1968 Cannabis sativa HOM05D006266 ORTHO05D008016 2.4e-281 971.8 586 78.2
Gohir.A10G139200 Gossypium hirsutum HOM05D006266 ORTHO05D008016 4.2e-281 971.1 584 77.1
Potri.017G027500 Populus trichocarpa HOM05D006266 ORTHO05D008016 7.1e-281 970.3 580 79.0
Gorai.011G140700 Gossypium raimondii HOM05D006266 ORTHO05D008016 2.1e-280 968.8 584 76.7
Gohir.D10G127600 Gossypium hirsutum HOM05D006266 ORTHO05D008016 1.0e-279 966.5 584 76.5
Prupe.1G197500 Prunus persica HOM05D006266 ORTHO05D008016 2.3e-279 965.3 577 76.8
Sabra17G0016500 Salix brachista HOM05D006266 ORTHO05D008016 3.9e-279 964.5 622 74.6
Cfa015189 Carpinus fangiana HOM05D006266 ORTHO05D008016 8.7e-279 963.4 563 79.4
Duzib151G0889 Durio zibethinus HOM05D006266 ORTHO05D008016 8.7e-279 963.4 584 76.5
Thecc.04G175700 Theobroma cacao HOM05D006266 ORTHO05D008016 8.7e-279 963.4 583 77.4
Atru.chr4.1256 Acer truncatum HOM05D006266 ORTHO05D008016 2.1e-277 958.7 634 72.7
GSVIVG01010835001 Vitis vinifera HOM05D006266 ORTHO05D008016 4.8e-277 957.6 537 81.9
PSO675G5931 Papaver somniferum HOM05D006266 ORTHO05D008016 1.4e-276 956.1 549 81.1
Nn7g37595 Nelumbo nucifera HOM05D006266 ORTHO05D008016 4.0e-276 954.5 548 80.1
Migut.G01347 Erythranthe guttata HOM05D006266 ORTHO05D008016 1.2e-275 953.0 632 72.5
Thhalv10001353m.g Eutrema salsugineum HOM05D006266 ORTHO05D008016 2.6e-275 951.8 640 71.1
BolC4t22077H Brassica oleracea HOM05D006266 ORTHO05D008016 3.4e-275 951.4 548 78.6
TAR362G0699 Trochodendron aralioides HOM05D006266 ORTHO05D008016 4.5e-275 951.0 677 67.9
AL4G42140 Arabidopsis lyrata HOM05D006266 ORTHO05D008016 1.7e-274 949.1 627 71.3
Solyc12g021170.2 Solanum lycopersicum HOM05D006266 ORTHO05D008016 1.7e-274 949.1 556 78.8
BcaC02g12401 Brassica carinata HOM05D006266 ORTHO05D008016 3.8e-274 948.0 622 72.3
Manes.11G123500 Manihot esculenta HOM05D006266 ORTHO05D008016 4.9e-274 947.6 577 77.1
AT2G43400 Arabidopsis thaliana HOM05D006266 ORTHO05D008016 6.5e-274 947.2 640 70.8
BraA05t19361Z Brassica rapa HOM05D006266 ORTHO05D008016 4.2e-273 944.5 635 70.9
FvH4_4g10960 Fragaria vesca HOM05D006266 ORTHO05D008016 4.2e-273 944.5 569 76.8
Sp4g25480 Schrenkiella parvula HOM05D006266 ORTHO05D008016 4.2e-273 944.5 626 72.2
C04p04440 Brassica napus HOM05D006266 ORTHO05D008016 9.3e-273 943.3 623 71.9
TPR.G18865 Trifolium pratense HOM05D006266 ORTHO05D008016 1.2e-272 943.0 574 75.8
Ca_01251_v3 Cicer arietinum L. HOM05D006266 ORTHO05D008016 1.6e-272 942.6 550 78.2
Sopen12g011050 Solanum pennellii HOM05D006266 ORTHO05D008016 6.0e-272 940.6 537 80.4
A05p03740 Brassica napus HOM05D006266 ORTHO05D008016 1.8e-271 939.1 646 70.4
ATR0743G015 Amborella trichopoda HOM05D006266 ORTHO05D008016 6.7e-271 937.2 547 77.7
Glyma.15G029200 Glycine max HOM05D006266 ORTHO05D008016 1.1e-270 936.4 586 75.1
Ciclev10019615m.g Citrus clementina HOM05D006266 ORTHO05D008016 1.9e-270 935.6 540 79.1
QL10p050722 Quercus lobata HOM05D006266 ORTHO05D008016 2.5e-270 935.3 665 69.5
Psat5g289640 Pisum sativum HOM05D006266 ORTHO05D008016 5.7e-270 934.1 584 73.8
Carub.0004s2587 Capsella rubella HOM05D006266 ORTHO05D008016 2.1e-269 932.2 625 71.4
THA.LOC104805138 Tarenaya hassleriana HOM05D006266 ORTHO05D008016 2.1e-269 932.2 582 74.2
MSTRG.4284 Avicennia marina HOM05D006266 ORTHO05D008016 6.2e-269 930.6 644 69.3
Phvul.005G153800 Phaseolus vulgaris HOM05D006266 ORTHO05D008016 1.1e-268 929.9 584 73.8
Aa31LG1G25150 Aethionema arabicum HOM05D006266 ORTHO05D008016 1.4e-268 929.5 620 70.6
Lj3g0007796 Lotus japonicus HOM05D006266 ORTHO05D008016 1.8e-268 929.1 543 78.1
Aqoxy2G04160 Aquilegia oxysepala HOM05D006266 ORTHO05D008016 4.1e-268 927.9 540 78.7
RcHm_v2.0_Chr4g0406421 Rosa chinensis HOM05D006266 ORTHO05D008016 5.3e-268 927.5 617 71.3
Nitab4.5_0000505g0020 Nicotiana tabacum HOM05D006266 ORTHO05D008016 1.2e-267 926.4 585 74.0
CiPaw.02G052400 Carya illinoinensis HOM05D006266 ORTHO05D008016 1.5e-267 926.0 537 78.2
Sed0000993 Sechium edule HOM05D006266 ORTHO05D008016 1.5e-267 926.0 644 70.7
Lalb_Chr14g0372511 Lupinus albus HOM05D006266 ORTHO05D008016 2.0e-267 925.6 570 75.3
SGA_v2.0_scaffold17G08154 Striga asiatica HOM05D006266 ORTHO05D008016 2.0e-267 925.6 605 71.9
ClCG05G007190 Citrullus lanatus HOM05D006266 ORTHO05D008016 3.4e-267 924.9 621 71.3
Nitab4.5_0001990g0030 Nicotiana tabacum HOM05D006266 ORTHO05D008016 3.4e-267 924.9 573 75.4
vmacro00635 Vaccinium macrocarpon HOM05D006266 ORTHO05D008016 1.3e-266 922.9 649 70.1
PGR142G3304 Punica granatum HOM05D006266 ORTHO05D008016 2.9e-266 921.8 599 72.8
Eucgr.H00345 Eucalyptus grandis HOM05D006266 ORTHO05D008016 5.0e-266 921.0 537 78.6
Hund12414 Selenicereus undatus HOM05D006266 ORTHO05D008016 8.4e-266 920.2 642 69.5
CARHR138470 Cardamine hirsuta HOM05D006266 ORTHO05D008016 3.2e-265 918.3 633 69.0
Sc19g0002870 Simmondsia chinensis HOM05D006266 ORTHO05D008016 3.2e-265 918.3 646 69.7
Oeu024477.1 Olea europaea HOM05D006266 ORTHO05D008016 4.2e-265 917.9 599 71.5
MBI07_g02893_MAGBIO Magnolia biondii HOM05D006266 ORTHO05D008016 2.7e-264 915.2 558 76.0
VMungo1080G0961 Vigna mungo HOM05D006266 ORTHO05D008016 6.7e-263 910.6 646 67.6
HPP92_022167 Vanilla planifolia HOM05D006266 ORTHO05D008016 2.4e-260 902.1 617 69.4
FAN17G0658 Fragaria x ananassa HOM05D006266 ORTHO05D008016 6.9e-260 900.6 548 75.7
Actinidia27081 Actinidia chinensis HOM05D006266 ORTHO05D008016 2.0e-259 899.0 675 67.7
CDE09G1029 Ceratophyllum demersum HOM05D006266 ORTHO05D008016 2.0e-259 899.0 558 73.5
arahy.Tifrunner.gnm1.ann1.D6UD48 Arachis hypogaea HOM05D006266 ORTHO05D008016 3.4e-259 898.3 549 76.0
arahy.Tifrunner.gnm1.ann1.JU07H9 Arachis hypogaea HOM05D006266 ORTHO05D008016 3.4e-259 898.3 549 76.0
DCAR_028531 Daucus carota HOM05D006266 ORTHO05D008016 2.5e-257 892.1 556 75.5
CAN.G51.9 Capsicum annuum HOM05D006266 ORTHO05D008016 1.6e-256 889.4 589 72.2
CsaV3_3G015950 Cucumis sativus L. HOM05D006266 ORTHO05D008016 1.0e-255 886.7 554 75.6
MD04G1042900 Malus domestica HOM05D006266 ORTHO05D008016 7.4e-254 880.6 640 66.9
Peaxi162Scf00184g00418 Petunia axillaris HOM05D006266 ORTHO05D008016 1.7e-250 869.4 584 71.6
Cpa.g.sc9.312 Carica papaya HOM05D006266 ORTHO05D008016 9.7e-246 853.6 625 68.3
PSO017G5469 Papaver somniferum HOM05D006266 ORTHO05D008016 9.7e-246 853.6 549 73.8
Dinv44151 Davidia involucrata HOM05D006266 ORTHO05D008016 1.3e-245 853.2 479 82.0
Pp3c26_13090 Physcomitrium patens HOM05D006266 ORTHO05D008016 8.2e-245 850.5 554 70.9
Medtr2g099040 Medicago truncatula HOM05D006266 ORTHO05D008016 1.5e-243 846.3 517 75.0
Rhsim09G0023000 Rhododendron simsii HOM05D006266 ORTHO05D008016 1.5e-243 846.3 878 53.6
Haze_01464 Corylus avellana HOM05D006266 ORTHO05D008016 2.6e-243 845.5 834 55.2
Hma1.2p1_0324F.1_g125550 Hydrangea macrophylla HOM05D006266 ORTHO05D008016 1.5e-241 839.7 467 81.4
SMO141G0282 Selaginella moellendorffii HOM05D006266 ORTHO05D008016 2.5e-241 839.0 540 71.1
Lj3C32G4 Lonicera japonica HOM05D006266 ORTHO05D008016 1.3e-234 816.6 646 64.7
Lj3C1G0 Lonicera japonica HOM05D006266 ORTHO05D008016 2.2e-234 815.8 641 64.6
Hma1.2p1_0324F.1_g125560 Hydrangea macrophylla HOM05D006266 ORTHO05D008016 3.8e-226 788.5 432 82.2
AUR62023848 Chenopodium quinoa HOM05D006266 ORTHO05D008016 1.0e-218 763.8 573 64.0
AagrBONN_evm.TU.Sc2ySwM_117.3933 Anthoceros agrestis HOM05D006266 ORTHO05D008016 2.3e-218 762.7 500 70.2
Cre02.g094300 Chlamydomonas reinhardtii HOM05D006266 ORTHO05D008016 3.3e-193 679.1 550 58.9
Cc03_g11970 Coffea canephora HOM05D006266 ORTHO05D008016 9.9e-190 667.5 369 81.0
MELO3C006793.2 Cucumis melo HOM05D006266 ORTHO05D008016 2.2e-189 666.4 449 71.7
Mapoly0012s0124 Marchantia polymorpha HOM05D006266 ORTHO05D008016 2.8e-184 649.4 461 66.4
PRCOL_00003135 Prasinoderma coloniale HOM05D006266 ORTHO05D008016 3.5e-171 605.9 586 52.6
Cfa026422 Carpinus fangiana HOM05D006266 ORTHO05D008016 2.2e-165 586.6 541 54.7
AUR62002342 Chenopodium quinoa HOM05D006266 ORTHO05D008016 1.9e-164 583.6 441 62.6
Haze_26227 Corylus avellana HOM05D006266 ORTHO05D008016 7.1e-164 581.6 556 50.9
Haze_26951 Corylus avellana HOM05D006266 ORTHO05D008016 1.6e-160 570.5 560 49.6
Zm00001eb043590 Zea mays HOM05D006266 ORTHO05D008016 2.2e-149 533.5 350 71.4
Ah.07g202330 Amaranthus hybridus HOM05D006266 ORTHO05D008016 6.9e-135 485.3 395 63.5
unitig_52.g17681 Utricularia gibba HOM05D006266 ORTHO05D008016 1.3e-120 438.0 428 55.1
SEGI_14637 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 3.7e-112 409.8 266 72.6
Ah.07g202340 Amaranthus hybridus HOM05D006266 ORTHO05D008016 1.0e-98 365.2 201 81.6
Eucgr.L02537 Eucalyptus grandis HOM05D006266 ORTHO05D008016 4.1e-95 353.2 202 77.2
PGSC0003DMG400014944 Solanum tuberosum HOM05D006266 ORTHO05D008016 2.2e-80 304.3 172 78.5
FAN12G3251 Fragaria x ananassa HOM05D006266 ORTHO05D008016 1.1e-79 302.0 201 72.6
EL10Ac3g06005 Beta vulgaris HOM05D006266 ORTHO05D008016 6.0e-78 296.2 215 68.4
Cc03_g11980 Coffea canephora HOM05D006266 ORTHO05D008016 5.2e-74 283.1 173 75.1
Sopen02g004370 Solanum pennellii HOM05D006266 ORTHO05D008016 1.3e-72 278.5 170 77.1
SEGI_11902 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 1.0e-53 215.7 150 67.3
CSS0026769 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 7.4e-52 209.5 120 80.0
Os10g0516300 Oryza sativa ssp. japonica HOM05D006266 ORTHO05D008016 7.1e-47 193.0 116 77.6
CSS0016449 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 1.6e-43 181.8 106 83.0
CSS0001057 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 9.7e-36 156.0 127 63.8
CSS0026763 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 5.9e-33 146.7 127 60.6
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 1.0e-32 146.0 114 67.5
SEGI_08796 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 1.0e-32 146.0 82 76.8
SEGI_29623 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 7.4e-28 129.8 83 75.9
CSS0001558 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 7.7e-25 119.8 112 57.1
CSS0004821 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 7.7e-25 119.8 112 57.1
CSS0016187 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 2.8e-19 101.3 80 65.0
Lsat_1_v5_gn_7_84681 Lactuca sativa HOM05D006266 ORTHO05D004407 1.4e-15 89.0 51 78.4
arahy.Tifrunner.gnm1.ann1.QA6FBH Arachis hypogaea HOM05D006266 ORTHO05D008016 3.0e-13 81.3 56 71.4
CSS0026903 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 1.8e-10 72.0 59 62.7
CSS0019028 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D024694 3.1e-10 71.2 41 78.0
CSS0008442 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D024694 3.5e-09 67.8 40 75.0
CSS0022444 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D024694 3.5e-09 67.8 40 75.0
Sp4g25500 Schrenkiella parvula HOM05D000001 ORTHO05D000003 1.0e-08 66.2 114 40.4
AUR62006021 Chenopodium quinoa HOM05D001494 ORTHO05D001364 1.1e-07 62.8 53 50.9
CSS0006121 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 5.5e-07 60.5 34 79.4


User provided reference genes

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