Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0023201 Helianthus annuus HOM05D005408 ORTHO05D006790 0.0e+00 1712.6 886 100.0
HanXRQChr11g0330791 Helianthus annuus HOM05D005408 ORTHO05D006790 0.0e+00 1094.0 965 65.3
Lsat_1_v5_gn_1_74661 Lactuca sativa HOM05D005408 ORTHO05D006790 1.6e-294 1016.1 971 61.1
ECA248G0134 Erigeron canadensis HOM05D005408 ORTHO05D006790 1.3e-280 969.9 940 59.0
Dinv29839 Davidia involucrata HOM05D005408 ORTHO05D006790 2.9e-232 809.3 961 51.3
Dinv27073 Davidia involucrata HOM05D005408 ORTHO05D006790 5.5e-231 805.1 1000 50.8
Actinidia20821 Actinidia chinensis HOM05D005408 ORTHO05D006790 2.9e-219 766.1 976 49.5
CSS0047984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 6.4e-219 765.0 987 48.7
CSS0016984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 1.5e-212 743.8 979 48.4
DCAR_024278 Daucus carota HOM05D005408 ORTHO05D006790 1.5e-212 743.8 957 49.3
Lj3A679T38 Lonicera japonica HOM05D005408 ORTHO05D006790 2.0e-212 743.4 1001 48.6
Lj3A684T25 Lonicera japonica HOM05D005408 ORTHO05D006790 3.7e-211 739.2 1002 48.2
Thecc.04G259100 Theobroma cacao HOM05D005408 ORTHO05D006790 6.4e-211 738.4 962 47.7
Sopen09g033240 Solanum pennellii HOM05D005408 ORTHO05D006790 4.1e-210 735.7 984 47.3
Hma1.2p1_0112F.1_g054305 Hydrangea macrophylla HOM05D005408 ORTHO05D006790 1.2e-209 734.2 687 57.1
Rhsim02G0041600 Rhododendron simsii HOM05D005408 ORTHO05D006790 1.6e-209 733.8 752 55.1
Solyc09g090340.3 Solanum lycopersicum HOM05D005408 ORTHO05D006790 4.6e-209 732.3 985 46.8
FAN12G0827 Fragaria x ananassa HOM05D005408 ORTHO05D006790 6.0e-209 731.9 942 49.2
TAR633G1608 Trochodendron aralioides HOM05D005408 ORTHO05D006790 1.3e-208 730.7 718 55.3
Prupe.1G042300 Prunus persica HOM05D005408 ORTHO05D006790 3.0e-208 729.6 1006 46.8
GSVIVG01027854001 Vitis vinifera HOM05D005408 ORTHO05D006790 3.9e-208 729.2 953 48.9
Gohir.D02G046500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 6.6e-208 728.4 927 48.1
PGSC0003DMG400017212 Solanum tuberosum HOM05D005408 ORTHO05D006790 1.1e-207 727.6 984 47.2
Duzib151G0888 Durio zibethinus HOM05D005408 ORTHO05D006790 1.9e-207 726.9 949 48.1
Gohir.A02G040500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 1.9e-207 726.9 938 48.5
QL06p019224 Quercus lobata HOM05D005408 ORTHO05D006790 1.1e-205 721.1 943 48.6
MD16G1222000 Malus domestica HOM05D005408 ORTHO05D006790 1.4e-205 720.7 975 47.5
FvH4_4g04020 Fragaria vesca HOM05D005408 ORTHO05D006790 1.8e-205 720.3 942 48.5
Manes.15G043200 Manihot esculenta HOM05D005408 ORTHO05D006790 1.5e-204 717.2 940 48.6
COL.COLO4_15917 Corchorus olitorius HOM05D005408 ORTHO05D006790 4.4e-204 715.7 919 47.6
FAN17G2537 Fragaria x ananassa HOM05D005408 ORTHO05D006790 9.9e-204 714.5 945 49.0
Potri.008G169200 Populus trichocarpa HOM05D005408 ORTHO05D006790 9.9e-204 714.5 943 48.9
Cfa014743 Carpinus fangiana HOM05D005408 ORTHO05D006790 2.9e-203 713.0 969 47.3
CiPaw.02G109300 Carya illinoinensis HOM05D005408 ORTHO05D006790 2.9e-203 713.0 963 48.4
TAR362G0279 Trochodendron aralioides HOM05D005408 ORTHO05D006790 3.7e-203 712.6 992 46.7
Haze_11418 Corylus avellana HOM05D005408 ORTHO05D006790 4.9e-203 712.2 969 46.6
RcHm_v2.0_Chr4g0394291 Rosa chinensis HOM05D005408 ORTHO05D006790 1.4e-202 710.7 929 48.8
Eucgr.H03018 Eucalyptus grandis HOM05D005408 ORTHO05D006790 2.4e-202 709.9 951 47.1
Peaxi162Scf00392g00730 Petunia axillaris HOM05D005408 ORTHO05D006790 3.2e-202 709.5 980 45.9
Potri.010G069200 Populus trichocarpa HOM05D005408 ORTHO05D006790 3.2e-202 709.5 948 48.3
Sabra08G0129000 Salix brachista HOM05D005408 ORTHO05D006790 5.4e-202 708.8 954 47.3
Atru.chr4.2004 Acer truncatum HOM05D005408 ORTHO05D006790 1.2e-201 707.6 928 48.2
CAN.G220.39 Capsicum annuum HOM05D005408 ORTHO05D006790 1.2e-201 707.6 1027 45.7
MD13G1216600 Malus domestica HOM05D005408 ORTHO05D006790 2.1e-201 706.8 984 47.0
Ciclev10004264m.g Citrus clementina HOM05D005408 ORTHO05D006790 3.5e-201 706.1 948 46.7
Oeu002940.1 Olea europaea HOM05D005408 ORTHO05D006790 1.3e-200 704.1 930 48.2
vmacro15459 Vaccinium macrocarpon HOM05D005408 ORTHO05D006790 1.3e-200 704.1 759 53.4
Nn1g02867 Nelumbo nucifera HOM05D005408 ORTHO05D006790 1.7e-200 703.7 684 55.0
TWI09G0385 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 3.0e-200 703.0 974 47.2
Manes.15G043300 Manihot esculenta HOM05D005408 ORTHO05D006790 3.9e-200 702.6 946 46.8
Duzib212G0761 Durio zibethinus HOM05D005408 ORTHO05D006790 3.3e-199 699.5 939 46.8
Cc03_g05790 Coffea canephora HOM05D005408 ORTHO05D006790 6.2e-198 695.3 989 45.9
MELO3C006406.2 Cucumis melo HOM05D005408 ORTHO05D006790 1.1e-197 694.5 968 45.8
CsaV3_3G011930 Cucumis sativus L. HOM05D005408 ORTHO05D006790 4.0e-197 692.6 966 45.3
Aa31LG9G3050 Aethionema arabicum HOM05D005408 ORTHO05D006790 5.2e-197 692.2 924 45.1
Nitab4.5_0000596g0060 Nicotiana tabacum HOM05D005408 ORTHO05D006790 8.9e-197 691.4 1056 43.7
MSTRG.21921 Avicennia marina HOM05D005408 ORTHO05D006790 1.2e-196 691.0 981 45.6
EL10Ac3g04981 Beta vulgaris HOM05D005408 ORTHO05D006790 2.6e-196 689.9 957 45.8
arahy.Tifrunner.gnm1.ann1.HQEG75 Arachis hypogaea HOM05D005408 ORTHO05D006790 3.4e-196 689.5 875 48.1
Lalb_Chr03g0037341 Lupinus albus HOM05D005408 ORTHO05D006790 5.8e-196 688.7 943 45.7
AT4G14310 Arabidopsis thaliana HOM05D005408 ORTHO05D006790 7.6e-196 688.3 928 46.4
arahy.Tifrunner.gnm1.ann1.NA4LRU Arachis hypogaea HOM05D005408 ORTHO05D006790 2.2e-195 686.8 792 50.5
ClCG05G004200 Citrullus lanatus HOM05D005408 ORTHO05D006790 2.9e-195 686.4 985 45.0
CANSAT54G2691 Cannabis sativa HOM05D005408 ORTHO05D006790 3.8e-195 686.0 929 47.5
AUR62015544 Chenopodium quinoa HOM05D005408 ORTHO05D006790 4.9e-195 685.6 953 46.9
Nitab4.5_0000044g0530 Nicotiana tabacum HOM05D005408 ORTHO05D006790 6.4e-195 685.3 1023 44.7
Lj6g0021221 Lotus japonicus HOM05D005408 ORTHO05D006790 1.1e-194 684.5 695 53.4
Sc19g0003230 Simmondsia chinensis HOM05D005408 ORTHO05D006790 1.4e-194 684.1 922 45.6
SalBow3G0714 Salvia bowleyana HOM05D005408 ORTHO05D006790 9.2e-194 681.4 934 46.8
Sabra10G0037900 Salix brachista HOM05D005408 ORTHO05D006790 2.1e-193 680.2 945 46.7
Carub.0007s2798 Capsella rubella HOM05D005408 ORTHO05D006790 3.5e-193 679.5 933 45.4
AL7G41950 Arabidopsis lyrata HOM05D005408 ORTHO05D006790 1.3e-192 677.6 876 46.7
Glyma.02G003800 Glycine max HOM05D005408 ORTHO05D006790 1.7e-192 677.2 674 54.3
Migut.N00286 Erythranthe guttata HOM05D005408 ORTHO05D006790 3.9e-192 676.0 957 45.2
TWI53G1583 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 5.1e-192 675.6 964 45.4
CiPaw.01G181400 Carya illinoinensis HOM05D005408 ORTHO05D006790 6.6e-192 675.2 957 46.1
Oeu005084.1 Olea europaea HOM05D005408 ORTHO05D006790 1.1e-191 674.5 934 47.2
MBI07_g31083_MAGBIO Magnolia biondii HOM05D005408 ORTHO05D006790 1.9e-191 673.7 984 44.4
VMungo0720G1073 Vigna mungo HOM05D005408 ORTHO05D006790 4.3e-191 672.5 680 52.8
Glyma.10G004700 Glycine max HOM05D005408 ORTHO05D006790 1.2e-190 671.0 653 55.6
PGR004G2334 Punica granatum HOM05D005408 ORTHO05D006790 2.8e-190 669.8 939 47.7
FAN22G0039 Fragaria x ananassa HOM05D005408 ORTHO05D006790 3.6e-190 669.5 983 45.5
CARHR220500 Cardamine hirsuta HOM05D005408 ORTHO05D006790 4.7e-190 669.1 940 45.6
AUR62002164 Chenopodium quinoa HOM05D005408 ORTHO05D006790 1.4e-189 667.5 936 46.8
Cpa.g.sc44.32 Carica papaya HOM05D005408 ORTHO05D006790 4.0e-189 666.0 973 45.4
Phvul.007G275400 Phaseolus vulgaris HOM05D005408 ORTHO05D006790 9.0e-189 664.8 665 54.3
Psat6g104520 Pisum sativum HOM05D005408 ORTHO05D006790 4.4e-188 662.5 684 53.4
Thhalv10024359m.g Eutrema salsugineum HOM05D005408 ORTHO05D006790 1.7e-187 660.6 872 45.2
TPR.G25189 Trifolium pratense HOM05D005408 ORTHO05D006790 4.9e-187 659.1 660 53.2
Hund03055 Selenicereus undatus HOM05D005408 ORTHO05D006790 1.1e-186 657.9 673 52.7
Ca_03010_v3 Cicer arietinum L. HOM05D005408 ORTHO05D006790 1.4e-186 657.5 710 52.4
PSO832G1937 Papaver somniferum HOM05D005408 ORTHO05D006790 1.4e-186 657.5 1010 43.3
Gorai.005G051300 Gossypium raimondii HOM05D005408 ORTHO05D006790 3.5e-185 652.9 908 45.9
Aqoxy5G00183 Aquilegia oxysepala HOM05D005408 ORTHO05D006790 7.8e-185 651.7 729 50.2
Medtr1g041685 Medicago truncatula HOM05D005408 ORTHO05D006790 1.0e-184 651.4 674 53.3
Sp7g12340 Schrenkiella parvula HOM05D005408 ORTHO05D006790 1.0e-184 651.4 947 43.9
Migut.G00502 Erythranthe guttata HOM05D005408 ORTHO05D006790 8.7e-184 648.3 919 46.4
PSO210G0343 Papaver somniferum HOM05D005408 ORTHO05D006790 2.5e-183 646.7 999 43.6
Sed0026902 Sechium edule HOM05D005408 ORTHO05D006790 3.6e-182 642.9 927 44.4
SGA_v2.0_scaffold43G16217 Striga asiatica HOM05D005408 ORTHO05D006790 1.8e-181 640.6 977 43.6
BcaNung06103 Brassica carinata HOM05D005408 ORTHO05D006790 4.0e-181 639.4 923 44.0
THA.LOC104804761 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 8.4e-179 631.7 943 43.7
C03p76860 Brassica napus HOM05D005408 ORTHO05D006790 1.9e-178 630.6 927 43.7
THA.LOC104822240 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 1.9e-178 630.6 960 43.1
BcaC01g00205 Brassica carinata HOM05D005408 ORTHO05D006790 1.6e-177 627.5 927 43.6
A08p24350 Brassica napus HOM05D005408 ORTHO05D006790 3.9e-176 622.9 925 43.1
Zm00001eb191660 Zea mays HOM05D005408 ORTHO05D006790 1.1e-175 621.3 683 49.5
Zm00001eb258510 Zea mays HOM05D005408 ORTHO05D006790 3.3e-175 619.8 676 50.0
MSTRG.4147 Avicennia marina HOM05D005408 ORTHO05D006790 3.7e-174 616.3 667 49.6
SGA_v2.0_scaffold101G29731 Striga asiatica HOM05D005408 ORTHO05D006790 3.7e-174 616.3 928 43.0
BolC3t19941H Brassica oleracea HOM05D005408 ORTHO05D006790 9.0e-173 611.7 945 42.3
BraA08t34390Z Brassica rapa HOM05D005408 ORTHO05D006790 2.6e-172 610.1 950 42.0
CDE04G2551 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 6.0e-161 572.4 653 48.7
CDE07G1006 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 7.9e-161 572.0 729 46.5
ATR0736G089 Amborella trichopoda HOM05D005408 ORTHO05D006790 8.7e-160 568.5 730 46.2
SEGI_14734 Sequoiadendron giganteum HOM05D005408 ORTHO05D006790 3.9e-144 516.5 695 42.4
HPP92_008326 Vanilla planifolia HOM05D005408 ORTHO05D006790 7.4e-143 512.3 643 45.9
unitig_736.g22443 Utricularia gibba HOM05D005408 ORTHO05D006790 6.5e-139 499.2 657 44.9
TPR.G25191 Trifolium pratense HOM05D005408 ORTHO05D006790 3.2e-122 443.7 665 41.4
Ah.13g072600 Amaranthus hybridus HOM05D005408 ORTHO05D006790 7.3e-106 389.4 706 40.4
Mapoly0063s0094 Marchantia polymorpha HOM05D005408 ORTHO05D006790 7.8e-100 369.4 499 38.5
Os02g0809900 Oryza sativa ssp. japonica HOM05D005408 ORTHO05D006790 1.4e-93 348.6 292 57.5
Pp3c25_7300 Physcomitrium patens HOM05D005408 ORTHO05D006790 1.6e-89 335.1 870 30.5
Pp3c16_10130 Physcomitrium patens HOM05D005408 ORTHO05D006790 1.1e-88 332.4 506 35.4
AagrBONN_evm.TU.Sc2ySwM_228.3605 Anthoceros agrestis HOM05D005408 ORTHO05D006790 9.2e-77 292.7 880 29.3
SalBow8G3468 Salvia bowleyana HOM05D005408 ORTHO05D006790 6.7e-35 153.7 116 68.1
SalBow7G4774 Salvia bowleyana HOM05D005408 ORTHO05D006790 3.7e-33 147.9 169 49.1
CBR_g30942 Chara braunii HOM05D005408 ORTHO05D006790 5.0e-30 137.5 367 29.4
Hund11908 Selenicereus undatus HOM05D005408 ORTHO05D006790 8.5e-22 110.2 176 40.9
Rhsim02G0041700 Rhododendron simsii HOM05D005408 ORTHO05D006790 7.4e-18 97.1 175 37.1
BolC4t25725H Brassica oleracea HOM05D005408 ORTHO05D006790 4.0e-11 74.7 78 48.7
C04p41430 Brassica napus HOM05D005408 ORTHO05D006790 5.2e-11 74.3 116 41.4
BolC4t25724H Brassica oleracea HOM05D005408 ORTHO05D006790 6.8e-11 73.9 116 41.4
C04p41440 Brassica napus HOM05D005408 ORTHO05D006790 1.2e-10 73.2 78 47.4
A04p07780 Brassica napus HOM05D005408 ORTHO05D006790 1.2e-07 63.2 80 48.8
BcaC02g09333 Brassica carinata HOM05D005408 ORTHO05D006790 6.5e-06 57.4 55 56.4
CiPaw.06G041800 Carya illinoinensis HOM05D005408 ORTHO05D006790 6.5e-06 57.4 327 32.7


User provided reference genes

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