Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0023061 Helianthus annuus HOM05D004684 ORTHO05D006904 8.2e-310 1066.2 546 100.0
ECA248G0897 Erigeron canadensis HOM05D004684 ORTHO05D006904 2.6e-287 991.5 546 92.5
CSS0049189 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 1.1e-256 889.8 546 81.0
CSS0041578 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 3.1e-256 888.3 546 80.8
Thecc.04G266300 Theobroma cacao HOM05D004684 ORTHO05D006904 8.9e-256 886.7 547 81.7
Gohir.D09G232200 Gossypium hirsutum HOM05D004684 ORTHO05D006904 1.2e-252 876.3 546 80.4
Gohir.A09G231100 Gossypium hirsutum HOM05D004684 ORTHO05D006904 1.3e-251 872.8 546 80.2
Rhsim04G0170900 Rhododendron simsii HOM05D004684 ORTHO05D006904 1.3e-251 872.8 546 79.1
Gorai.006G255000 Gossypium raimondii HOM05D004684 ORTHO05D006904 6.6e-251 870.5 562 78.6
CANSAT78G0903 Cannabis sativa HOM05D004684 ORTHO05D006904 1.5e-250 869.4 547 79.2
Lsat_1_v5_gn_1_75460 Lactuca sativa HOM05D004684 ORTHO05D006904 3.3e-250 868.2 561 81.5
Solyc09g090840.3 Solanum lycopersicum HOM05D004684 ORTHO05D006904 4.7e-249 864.4 571 76.9
Manes.03G157750 Manihot esculenta HOM05D004684 ORTHO05D006904 1.1e-248 863.2 548 79.0
Duzib212G0777 Durio zibethinus HOM05D004684 ORTHO05D006904 2.4e-248 862.1 547 79.3
QL06p021563 Quercus lobata HOM05D004684 ORTHO05D006904 6.8e-248 860.5 566 77.6
CiPaw.01G176700 Carya illinoinensis HOM05D004684 ORTHO05D006904 7.6e-247 857.1 546 78.4
TWI09G1097 Tripterygium wilfordii HOM05D004684 ORTHO05D006904 7.6e-247 857.1 547 78.8
Sc19g0005610 Simmondsia chinensis HOM05D004684 ORTHO05D006904 1.4e-245 852.8 546 78.4
AUR62015690 Chenopodium quinoa HOM05D004684 ORTHO05D006904 3.2e-245 851.7 547 77.7
AUR62031623 Chenopodium quinoa HOM05D004684 ORTHO05D006904 1.2e-244 849.7 547 77.1
Migut.G00560 Erythranthe guttata HOM05D004684 ORTHO05D006904 1.2e-244 849.7 549 78.0
vmacro08564 Vaccinium macrocarpon HOM05D004684 ORTHO05D006904 2.1e-244 849.0 533 78.8
Cfa014797 Carpinus fangiana HOM05D004684 ORTHO05D006904 1.7e-243 845.9 591 73.1
Sopen09g033800 Solanum pennellii HOM05D004684 ORTHO05D006904 1.7e-243 845.9 594 73.2
Prupe.1G050600 Prunus persica HOM05D004684 ORTHO05D006904 2.3e-243 845.5 551 77.5
arahy.Tifrunner.gnm1.ann1.14QJGF Arachis hypogaea HOM05D004684 ORTHO05D006904 3.9e-243 844.7 546 76.2
Haze_11481 Corylus avellana HOM05D004684 ORTHO05D006904 5.1e-243 844.3 575 74.6
MD16G1228500 Malus domestica HOM05D004684 ORTHO05D006904 6.6e-243 844.0 553 77.2
PGR031G2768 Punica granatum HOM05D004684 ORTHO05D006904 8.7e-243 843.6 548 78.5
arahy.Tifrunner.gnm1.ann1.1TG9FP Arachis hypogaea HOM05D004684 ORTHO05D006904 5.6e-242 840.9 546 76.0
Eucgr.G01176 Eucalyptus grandis HOM05D004684 ORTHO05D006904 2.8e-241 838.6 546 76.9
Glyma.08G047100 Glycine max HOM05D004684 ORTHO05D006904 3.6e-241 838.2 547 75.9
VMungo0251G0467 Vigna mungo HOM05D004684 ORTHO05D006904 4.8e-241 837.8 546 76.2
Glyma.05G240000 Glycine max HOM05D004684 ORTHO05D006904 8.1e-241 837.0 546 76.2
Ciclev10004652m.g Citrus clementina HOM05D004684 ORTHO05D006904 3.1e-240 835.1 562 76.0
Potri.008G172700 Populus trichocarpa HOM05D004684 ORTHO05D006904 6.9e-240 833.9 552 76.3
Sed0004125 Sechium edule HOM05D004684 ORTHO05D006904 6.9e-240 833.9 572 73.6
Cpa.g.sc59.16 Carica papaya HOM05D004684 ORTHO05D006904 9.0e-240 833.6 559 74.6
Phvul.002G322100 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 9.0e-240 833.6 546 75.5
RcHm_v2.0_Chr7g0203561 Rosa chinensis HOM05D004684 ORTHO05D006904 1.2e-239 833.2 552 75.2
Lj4g0011200 Lotus japonicus HOM05D004684 ORTHO05D006904 6.4e-238 827.4 546 76.6
Ah.04g153790 Amaranthus hybridus HOM05D004684 ORTHO05D006904 2.4e-237 825.5 556 74.8
Lalb_Chr09g0330801 Lupinus albus HOM05D004684 ORTHO05D006904 4.2e-237 824.7 551 75.3
PSO384G0234 Papaver somniferum HOM05D004684 ORTHO05D006904 5.4e-237 824.3 552 75.2
THA.LOC104804573 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 5.4e-237 824.3 548 75.5
Lj4g0013294 Lotus japonicus HOM05D004684 ORTHO05D006904 9.3e-237 823.5 547 76.8
MELO3C023021.2 Cucumis melo HOM05D004684 ORTHO05D006904 1.2e-236 823.2 557 75.4
FvH4_4g05030 Fragaria vesca HOM05D004684 ORTHO05D006904 1.6e-236 822.8 577 72.8
Eucgr.H02859 Eucalyptus grandis HOM05D004684 ORTHO05D006904 7.9e-236 820.5 546 75.6
Carub.0003s2695 Capsella rubella HOM05D004684 ORTHO05D006904 1.0e-235 820.1 550 74.9
AT1G48520 Arabidopsis thaliana HOM05D004684 ORTHO05D006904 2.3e-235 818.9 548 75.2
Nn1g02992 Nelumbo nucifera HOM05D004684 ORTHO05D006904 3.0e-235 818.5 501 80.4
THA.LOC104808741 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 3.0e-235 818.5 550 74.5
Sabra10G0042300 Salix brachista HOM05D004684 ORTHO05D006904 5.1e-235 817.8 593 71.5
Medtr5g055940 Medicago truncatula HOM05D004684 ORTHO05D006904 2.5e-234 815.5 546 74.4
CARHR100400 Cardamine hirsuta HOM05D004684 ORTHO05D006904 4.3e-234 814.7 550 74.7
Nitab4.5_0005154g0090 Nicotiana tabacum HOM05D004684 ORTHO05D006904 5.6e-234 814.3 584 71.9
Ca_04899_v3 Cicer arietinum L. HOM05D004684 ORTHO05D006904 7.4e-234 813.9 507 78.9
TPR.G38256 Trifolium pratense HOM05D004684 ORTHO05D006904 7.4e-234 813.9 551 74.2
Aqoxy5G00132 Aquilegia oxysepala HOM05D004684 ORTHO05D006904 2.1e-233 812.4 550 73.6
AL3G43250 Arabidopsis lyrata HOM05D004684 ORTHO05D006904 1.8e-232 809.3 548 74.3
Sp3g22110 Schrenkiella parvula HOM05D004684 ORTHO05D006904 9.9e-231 803.5 548 73.7
Thhalv10002467m.g Eutrema salsugineum HOM05D004684 ORTHO05D006904 3.8e-230 801.6 551 73.7
Hund24872 Selenicereus undatus HOM05D004684 ORTHO05D006904 1.1e-229 800.0 662 65.1
Zm00001eb197630 Zea mays HOM05D004684 ORTHO05D006904 2.4e-229 798.9 545 73.4
Os11g0544800 Oryza sativa ssp. japonica HOM05D004684 ORTHO05D006904 6.0e-228 794.3 548 73.4
DCAR_002298 Daucus carota HOM05D004684 ORTHO05D006904 1.3e-227 793.1 462 85.1
ClCG06G007290 Citrullus lanatus HOM05D004684 ORTHO05D006904 2.3e-227 792.3 573 71.2
ATR0787G095 Amborella trichopoda HOM05D004684 ORTHO05D006904 3.0e-227 792.0 543 73.8
MBI07_g08913_MAGBIO Magnolia biondii HOM05D004684 ORTHO05D006904 1.9e-226 789.3 522 74.9
BcaC01g03327 Brassica carinata HOM05D004684 ORTHO05D006904 7.4e-226 787.3 549 71.9
Aa31LG8G11000 Aethionema arabicum HOM05D004684 ORTHO05D006904 5.3e-224 781.2 545 72.8
A03p43590 Brassica napus HOM05D004684 ORTHO05D006904 6.9e-224 780.8 550 72.5
BraA03t13496Z Brassica rapa HOM05D004684 ORTHO05D006904 3.4e-223 778.5 556 71.8
C03p53620 Brassica napus HOM05D004684 ORTHO05D006904 3.2e-221 771.9 552 71.0
TAR636G2335 Trochodendron aralioides HOM05D002740 ORTHO05D003126 7.1e-221 770.8 520 74.8
BolC3t17622H Brassica oleracea HOM05D004684 ORTHO05D006904 1.6e-220 769.6 558 70.3
PGSC0003DMG400001555 Solanum tuberosum HOM05D004684 ORTHO05D006904 2.7e-220 768.8 538 73.2
SalBow2G2567 Salvia bowleyana HOM05D004684 ORTHO05D006904 3.7e-217 758.4 545 72.1
Dinv29794 Davidia involucrata HOM05D004684 ORTHO05D006904 2.6e-215 752.3 493 77.9
FAN22G2229 Fragaria x ananassa HOM05D004684 ORTHO05D006904 7.6e-215 750.7 609 65.8
EL10Ac3g06680 Beta vulgaris HOM05D004684 ORTHO05D006904 5.0e-214 748.0 593 65.8
Lalb_Chr05g0222141 Lupinus albus HOM05D004684 ORTHO05D006904 5.7e-210 734.6 440 81.6
Nitab4.5_0001041g0120 Nicotiana tabacum HOM05D004684 ORTHO05D006904 4.8e-209 731.5 584 66.3
Duzib151G0232 Durio zibethinus HOM05D004684 ORTHO05D006904 6.9e-208 727.6 547 68.6
Potri.010G064700 Populus trichocarpa HOM05D004684 ORTHO05D006904 9.1e-208 727.2 488 74.8
PSO832G1147 Papaver somniferum HOM05D004684 ORTHO05D006904 1.5e-207 726.5 489 73.8
CAN.G812.19 Capsicum annuum HOM05D004684 ORTHO05D006904 3.4e-207 725.3 483 75.4
Mapoly0107s0036 Marchantia polymorpha HOM05D004684 ORTHO05D006904 4.8e-201 704.9 521 66.8
HPP92_005111 Vanilla planifolia HOM05D004684 ORTHO05D006904 4.8e-201 704.9 494 72.3
CDE02G2675 Ceratophyllum demersum HOM05D004684 ORTHO05D006904 8.2e-201 704.1 440 79.1
Pp3c21_8670 Physcomitrium patens HOM05D004684 ORTHO05D006904 6.9e-200 701.0 485 70.9
Nitab4.5_0022682g0010 Nicotiana tabacum HOM05D004684 ORTHO05D006904 2.0e-194 682.9 484 71.9
Peaxi162Scf00531g00034 Petunia axillaris HOM05D004684 ORTHO05D006904 1.3e-190 670.2 553 65.1
CBR_g20386 Chara braunii HOM05D004684 ORTHO05D006904 7.2e-189 664.5 494 64.8
unitig_748.g8291 Utricularia gibba HOM05D004684 ORTHO05D006904 4.7e-188 661.8 571 63.2
SEGI_18338 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 9.7e-186 654.1 481 68.8
SMO147G0416 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 2.9e-182 642.5 497 64.6
SMO273G0058 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 2.0e-178 629.8 512 62.3
Actinidia20844 Actinidia chinensis HOM05D004684 ORTHO05D006904 2.6e-178 629.4 514 65.4
AagrBONN_evm.TU.Sc2ySwM_368.913 Anthoceros agrestis HOM05D004684 ORTHO05D006904 1.3e-177 627.1 421 73.4
MD13G1223700 Malus domestica HOM05D004684 ORTHO05D006904 1.5e-170 603.6 469 67.0
Psat2g106400 Pisum sativum HOM05D004684 ORTHO05D006904 1.7e-166 590.1 545 59.6
CsaV3_2G012390 Cucumis sativus L. HOM05D004684 ORTHO05D006904 2.3e-163 579.7 340 84.7
QL02p071976 Quercus lobata HOM05D004684 ORTHO05D006904 8.9e-163 577.8 453 67.5
MCO15G005 Micromonas commoda HOM05D004684 ORTHO05D006904 1.4e-160 570.5 486 59.5
Lj3A639G13 Lonicera japonica HOM05D004684 ORTHO05D006904 1.3e-158 563.9 369 79.9
PRCOL_00005018 Prasinoderma coloniale HOM05D004684 ORTHO05D006904 5.2e-155 552.0 485 58.8
RcHm_v2.0_Chr4g0395911 Rosa chinensis HOM05D004684 ORTHO05D006904 1.2e-146 524.2 319 82.1
BcaB03g14590 Brassica carinata HOM05D004684 ORTHO05D006904 1.2e-140 504.2 319 78.7
GSVIVG01027938001 Vitis vinifera HOM05D004684 ORTHO05D006904 1.2e-135 487.6 293 84.3
Pp3s32_289 Physcomitrium patens HOM05D004684 ORTHO05D006904 4.4e-130 469.2 481 47.4
Oeu059392.1 Olea europaea HOM05D004684 ORTHO05D006904 2.5e-117 426.8 271 81.2
Rhsim02G0163300 Rhododendron simsii HOM05D004684 ORTHO05D006904 3.8e-113 412.9 440 53.0
Psat2g046800 Pisum sativum HOM05D004684 ORTHO05D006904 6.9e-107 392.1 256 76.2
FAN12G2037 Fragaria x ananassa HOM05D004684 ORTHO05D006904 5.8e-106 389.0 385 57.4
MELO3C023047.2 Cucumis melo HOM05D004684 ORTHO05D006904 1.8e-99 367.5 228 79.8
Cc03_g06440 Coffea canephora HOM05D004684 ORTHO05D006904 3.2e-88 330.1 205 80.5
COL.COLO4_15980 Corchorus olitorius HOM05D004684 ORTHO05D006904 3.4e-82 310.1 210 72.9
Lj3C639G0 Lonicera japonica HOM05D004684 ORTHO05D006904 2.2e-81 307.4 209 71.8
Cc01_g12830 Coffea canephora HOM05D004684 ORTHO05D006904 1.8e-78 297.7 185 79.5
CsaV3_2G012380 Cucumis sativus L. HOM05D004684 ORTHO05D006904 1.6e-74 284.6 209 67.5
RcHm_v2.0_Chr4g0395921 Rosa chinensis HOM05D004684 ORTHO05D006904 3.5e-74 283.5 209 64.6
MCO02G423 Micromonas commoda HOM05D004684 ORTHO05D006904 1.8e-70 271.2 479 36.3
SEGI_18835 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 6.8e-62 242.7 185 65.9
Psat2g046760 Pisum sativum HOM05D004684 ORTHO05D006904 1.8e-54 218.0 139 79.1
FvH4_4g04730 Fragaria vesca HOM05D004684 ORTHO05D006904 8.3e-52 209.1 254 50.0
BcaB06g26612 Brassica carinata HOM05D004684 ORTHO05D006904 1.7e-49 201.4 240 47.1
Cfa025385 Carpinus fangiana HOM05D004684 ORTHO05D123888 7.3e-48 196.1 429 32.4
Cre14.g627488 Chlamydomonas reinhardtii HOM05D004684 ORTHO05D006904 1.6e-39 168.3 361 33.2
Phvul.002G091800 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 3.6e-39 167.2 134 63.4
Psat0s5182g0040 Pisum sativum HOM05D004684 ORTHO05D006904 8.9e-38 162.5 89 83.1
Psat3g087000 Pisum sativum HOM05D004684 ORTHO05D006904 8.9e-38 162.5 89 83.1
FAN12G0780 Fragaria x ananassa HOM05D004684 ORTHO05D006904 6.6e-33 146.4 146 55.5
CAN.G154.7 Capsicum annuum HOM05D004684 ORTHO05D010951 8.1e-31 139.4 123 61.8
Oeu059393.1 Olea europaea HOM05D004684 ORTHO05D029065 1.8e-30 138.3 111 66.7
SEGI_09601 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 6.6e-25 119.8 69 81.2
C07p12070 Brassica napus HOM05D004684 ORTHO05D027888 1.1e-24 119.0 151 49.0
GSVIVG01027937001 Vitis vinifera HOM05D004684 ORTHO05D029065 1.4e-22 112.1 63 85.7
BraA07t28588Z Brassica rapa HOM05D004684 ORTHO05D027888 9.9e-21 105.9 140 46.4
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 2.9e-20 104.4 64 79.7
Cc03_g06430 Coffea canephora HOM05D004684 ORTHO05D006904 3.8e-20 104.0 52 94.2
Cc03_g06450 Coffea canephora HOM05D004684 ORTHO05D029065 6.4e-20 103.2 64 78.1
DCAR_018323 Daucus carota HOM05D004684 ORTHO05D000311 6.4e-20 103.2 86 59.3
Pp3c22_13460 Physcomitrium patens HOM05D004684 ORTHO05D314634 1.1e-19 102.4 119 47.9
A07p08010 Brassica napus HOM05D004684 ORTHO05D027888 1.1e-16 92.4 106 51.9
MD13G1223600 Malus domestica HOM05D004684 ORTHO05D029065 1.1e-16 92.4 54 79.6
BcaC01g03330 Brassica carinata HOM05D004684 ORTHO05D006904 4.3e-16 90.5 117 42.7
arahy.Tifrunner.gnm1.ann1.M032NN Arachis hypogaea HOM05D003831 ORTHO05D004440 9.9e-13 79.3 58 72.4
BcaB06g27371 Brassica carinata HOM05D004684 ORTHO05D006904 7.1e-11 73.2 63 60.3
arahy.Tifrunner.gnm1.ann1.FY8GKD Arachis hypogaea HOM05D003831 ORTHO05D004440 8.7e-09 66.2 51 64.7
CAN.G1407.1 Capsicum annuum HOM05D004684 ORTHO05D016153 1.5e-08 65.5 46 69.6
Phvul.009G129001 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 3.3e-08 64.3 84 41.7
BolC7t41675H Brassica oleracea HOM05D004684 ORTHO05D027888 4.3e-08 63.9 72 50.0
arahy.Tifrunner.gnm1.ann1.PGR81E Arachis hypogaea HOM05D004684 ORTHO05D082538 3.6e-07 60.8 65 49.2
BcaC06g35681 Brassica carinata HOM05D004684 ORTHO05D008836 1.1e-06 59.3 51 54.9
arahy.Tifrunner.gnm1.ann1.G7A5RV Arachis hypogaea HOM05D004684 ORTHO05D083069 5.3e-06 57.0 38 68.4


User provided reference genes

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