Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0022501 Helianthus annuus HOM05D006155 ORTHO05D007529 1.1e-158 563.1 271 100.0
Lsat_1_v5_gn_1_76101 Lactuca sativa HOM05D006155 ORTHO05D007529 1.6e-117 426.4 261 80.1
Lj6C638T14 Lonicera japonica HOM05D006155 ORTHO05D007529 3.9e-103 378.6 215 82.3
Lju2262C0T14 Lonicera japonica HOM05D006155 ORTHO05D007529 1.5e-102 376.7 215 81.9
Actinidia35935 Actinidia chinensis HOM05D006155 ORTHO05D007529 7.4e-102 374.4 217 81.1
arahy.Tifrunner.gnm1.ann1.NLE1X5 Arachis hypogaea HOM05D006155 ORTHO05D007529 7.4e-102 374.4 275 68.0
CANSAT78G1287 Cannabis sativa HOM05D006155 ORTHO05D007529 7.4e-102 374.4 227 76.7
Prupe.1G052300 Prunus persica HOM05D006155 ORTHO05D007529 1.3e-101 373.6 253 71.5
arahy.Tifrunner.gnm1.ann1.L647M7 Arachis hypogaea HOM05D006155 ORTHO05D007529 1.6e-101 373.2 275 67.6
MSTRG.24647 Avicennia marina HOM05D006155 ORTHO05D007529 2.2e-101 372.9 217 80.2
Actinidia32965 Actinidia chinensis HOM05D006155 ORTHO05D007529 4.8e-101 371.7 214 81.3
Oeu055271.1 Olea europaea HOM05D006155 ORTHO05D007529 4.8e-101 371.7 239 74.1
Dinv27131 Davidia involucrata HOM05D006155 ORTHO05D007529 6.3e-101 371.3 217 81.6
CSS0040589 Camellia sinensis var. sinensis HOM05D006155 ORTHO05D007529 8.2e-101 370.9 236 75.8
Nitab4.5_0002937g0030 Nicotiana tabacum HOM05D006155 ORTHO05D007529 1.1e-100 370.5 235 74.5
Nitab4.5_0003474g0030 Nicotiana tabacum HOM05D006155 ORTHO05D007529 1.1e-100 370.5 248 70.6
Sopen09g033690 Solanum pennellii HOM05D006155 ORTHO05D007529 1.4e-100 370.2 215 78.6
MD16G1230400 Malus domestica HOM05D006155 ORTHO05D007529 1.8e-100 369.8 219 77.2
PGSC0003DMG400001560 Solanum tuberosum HOM05D006155 ORTHO05D007529 1.8e-100 369.8 215 78.6
FvH4_4g05140 Fragaria vesca HOM05D006155 ORTHO05D007529 2.4e-100 369.4 219 78.1
Solyc09g090750.3 Solanum lycopersicum HOM05D006155 ORTHO05D007529 4.1e-100 368.6 229 75.1
FAN12G3888 Fragaria x ananassa HOM05D006155 ORTHO05D007529 5.3e-100 368.2 219 78.1
EL10Ac3g06713 Beta vulgaris HOM05D006155 ORTHO05D007529 9.0e-100 367.5 245 72.2
RcHm_v2.0_Chr4g0396071 Rosa chinensis HOM05D006155 ORTHO05D007529 9.0e-100 367.5 261 69.3
Cc03_g06750 Coffea canephora HOM05D006155 ORTHO05D007529 1.2e-99 367.1 234 73.9
SalBow3G4628 Salvia bowleyana HOM05D006155 ORTHO05D007529 1.2e-99 367.1 231 74.5
DCAR_002295 Daucus carota HOM05D006155 ORTHO05D007529 3.4e-99 365.5 262 70.2
Ah.13g074940 Amaranthus hybridus HOM05D006155 ORTHO05D007529 4.5e-99 365.2 245 70.6
CAN.G812.29 Capsicum annuum HOM05D006155 ORTHO05D007529 5.9e-99 364.8 215 76.7
Oeu023143.1 Olea europaea HOM05D006155 ORTHO05D007529 1.3e-98 363.6 214 78.5
ECA248G1656 Erigeron canadensis HOM05D006155 ORTHO05D007529 6.5e-98 361.3 195 86.7
Rhsim09G0042400 Rhododendron simsii HOM05D006155 ORTHO05D007529 8.5e-98 360.9 251 71.3
Haze_11491 Corylus avellana HOM05D006155 ORTHO05D007529 1.9e-97 359.8 217 77.4
Migut.N00320 Erythranthe guttata HOM05D006155 ORTHO05D007529 3.2e-97 359.0 215 78.1
Peaxi162Scf00125g01318 Petunia axillaris HOM05D006155 ORTHO05D007529 4.2e-97 358.6 230 73.9
SGA_v2.0_scaffold285G47059 Striga asiatica HOM05D006155 ORTHO05D007529 4.2e-97 358.6 215 76.7
Gorai.011G180400 Gossypium raimondii HOM05D006155 ORTHO05D007529 5.5e-97 358.2 255 69.0
Hma1.2p1_0042F.1_g025650 Hydrangea macrophylla HOM05D006155 ORTHO05D007529 5.5e-97 358.2 252 69.0
PGR004G1196 Punica granatum HOM05D006155 ORTHO05D007529 7.2e-97 357.8 246 68.3
Gohir.D10G160700 Gossypium hirsutum HOM05D006155 ORTHO05D007529 9.3e-97 357.5 255 69.0
Lalb_Chr02g0150741 Lupinus albus HOM05D006155 ORTHO05D007529 1.2e-96 357.1 242 70.2
Cfa014810 Carpinus fangiana HOM05D006155 ORTHO05D007529 3.6e-96 355.5 223 74.4
Thecc.04G268500 Theobroma cacao HOM05D006155 ORTHO05D007529 6.1e-96 354.8 233 71.7
COL.COLO4_15996 Corchorus olitorius HOM05D006155 ORTHO05D007529 7.9e-96 354.4 217 75.6
Duzib151G0563 Durio zibethinus HOM05D006155 ORTHO05D007529 7.9e-96 354.4 233 72.5
FAN17G0987 Fragaria x ananassa HOM05D006155 ORTHO05D007529 7.9e-96 354.4 255 69.0
Gohir.A10G106500 Gossypium hirsutum HOM05D006155 ORTHO05D007529 2.3e-95 352.8 269 65.4
FAN22G1742 Fragaria x ananassa HOM05D006155 ORTHO05D007529 3.0e-95 352.4 270 65.9
GSVIVG01027954001 Vitis vinifera HOM05D006155 ORTHO05D007529 3.0e-95 352.4 231 71.4
VMungo0720G0761 Vigna mungo HOM05D006155 ORTHO05D007529 1.5e-94 350.1 241 68.9
TWI09G0038 Tripterygium wilfordii HOM05D006155 ORTHO05D007529 1.9e-94 349.7 244 68.9
Atru.chr4.1882 Acer truncatum HOM05D006155 ORTHO05D007529 2.5e-94 349.4 238 70.2
Ciclev10005577m.g Citrus clementina HOM05D006155 ORTHO05D007529 3.3e-94 349.0 240 69.2
Medtr1g073140 Medicago truncatula HOM05D006155 ORTHO05D007529 3.3e-94 349.0 240 68.3
Glyma.20G199100 Glycine max HOM05D006155 ORTHO05D007529 9.7e-94 347.4 218 72.9
Sabra10G0043200 Salix brachista HOM05D006155 ORTHO05D007529 1.7e-93 346.7 239 69.0
Manes.15G047200 Manihot esculenta HOM05D006155 ORTHO05D007529 2.8e-93 345.9 214 74.3
Phvul.L001872 Phaseolus vulgaris HOM05D006155 ORTHO05D007529 3.7e-93 345.5 236 70.3
Glyma.10G191200 Glycine max HOM05D006155 ORTHO05D007529 4.8e-93 345.1 221 71.0
Aqoxy2G03758 Aquilegia oxysepala HOM05D006155 ORTHO05D007529 1.4e-92 343.6 217 74.2
Hund20478 Selenicereus undatus HOM05D006155 ORTHO05D007529 1.4e-92 343.6 203 77.3
THA.LOC104816010 Tarenaya hassleriana HOM05D006155 ORTHO05D007529 9.1e-92 340.9 236 68.2
AT2G33255 Arabidopsis thaliana HOM05D006155 ORTHO05D007529 1.5e-91 340.1 231 68.8
C04p62700 Brassica napus HOM05D006155 ORTHO05D007529 2.0e-91 339.7 261 63.2
Duzib212G0768 Durio zibethinus HOM05D006155 ORTHO05D007529 2.0e-91 339.7 248 65.3
Eucgr.H02890 Eucalyptus grandis HOM05D006155 ORTHO05D007529 2.0e-91 339.7 217 71.0
PSO063G0276 Papaver somniferum HOM05D006155 ORTHO05D007529 2.0e-91 339.7 217 72.8
BolC4t27754H Brassica oleracea HOM05D006155 ORTHO05D007529 2.6e-91 339.3 262 61.5
Potri.010G063700 Populus trichocarpa HOM05D006155 ORTHO05D007529 2.6e-91 339.3 246 66.7
Carub.0004s1472 Capsella rubella HOM05D006155 ORTHO05D007529 3.4e-91 339.0 217 71.4
Lj5g0009281 Lotus japonicus HOM05D006155 ORTHO05D007529 4.5e-91 338.6 215 73.0
TPR.G18563 Trifolium pratense HOM05D006155 ORTHO05D007529 5.9e-91 338.2 217 71.4
Aa31LG5G4150 Aethionema arabicum HOM05D006155 ORTHO05D007529 1.0e-90 337.4 239 66.5
AL4G28890 Arabidopsis lyrata HOM05D006155 ORTHO05D007529 1.0e-90 337.4 217 70.5
BcaC02g07846 Brassica carinata HOM05D006155 ORTHO05D007529 2.2e-90 336.3 217 70.0
BolC3t14563H Brassica oleracea HOM05D006155 ORTHO05D007529 2.2e-90 336.3 248 64.1
BcaC01g05849 Brassica carinata HOM05D006155 ORTHO05D007529 5.0e-90 335.1 217 70.5
CARHR127260 Cardamine hirsuta HOM05D006155 ORTHO05D007529 5.0e-90 335.1 231 68.4
C03p21810 Brassica napus HOM05D006155 ORTHO05D007529 1.1e-89 334.0 248 63.3
A03p18670 Brassica napus HOM05D006155 ORTHO05D007529 3.2e-89 332.4 250 63.2
BraA04t18060Z Brassica rapa HOM05D006155 ORTHO05D007529 3.2e-89 332.4 261 62.1
CDE02G2305 Ceratophyllum demersum HOM05D006155 ORTHO05D007529 4.2e-89 332.0 231 67.1
ClCG05G003860 Citrullus lanatus HOM05D006155 ORTHO05D007529 4.2e-89 332.0 276 59.1
BcaB06g28663 Brassica carinata HOM05D006155 ORTHO05D007529 7.2e-89 331.3 254 62.6
BraA03t11126Z Brassica rapa HOM05D006155 ORTHO05D007529 7.2e-89 331.3 250 62.8
Sp4g15560 Schrenkiella parvula HOM05D006155 ORTHO05D007529 7.2e-89 331.3 231 65.8
BcaC02g07849 Brassica carinata HOM05D006155 ORTHO05D007529 9.4e-89 330.9 242 64.0
Thhalv10017161m.g Eutrema salsugineum HOM05D006155 ORTHO05D007529 9.4e-89 330.9 231 65.8
Nn3g19816 Nelumbo nucifera HOM05D006155 ORTHO05D007529 9.4e-89 330.9 225 71.6
Ca_09794_v3 Cicer arietinum L. HOM05D006155 ORTHO05D007529 1.2e-88 330.5 242 64.0
MELO3C006364.2 Cucumis melo HOM05D006155 ORTHO05D007529 6.1e-88 328.2 243 64.2
Sed0003799 Sechium edule HOM05D006155 ORTHO05D007529 6.1e-88 328.2 258 60.9
unitig_899.g15552 Utricularia gibba HOM05D006155 ORTHO05D007529 7.9e-88 327.8 268 61.2
CsaV3_3G011540 Cucumis sativus L. HOM05D006155 ORTHO05D007529 1.5e-86 323.6 214 69.2
vmacro00537 Vaccinium macrocarpon HOM05D006155 ORTHO05D007529 5.7e-86 321.6 344 51.5
Os02g0816100 Oryza sativa ssp. japonica HOM05D006155 ORTHO05D007529 1.4e-84 317.0 214 69.6
Sed0011773 Sechium edule HOM05D006155 ORTHO05D007529 7.7e-83 311.2 220 64.5
HPP92_007421 Vanilla planifolia HOM05D006155 ORTHO05D007529 2.0e-78 296.6 237 61.2
Cpa.g.sc3.348 Carica papaya HOM05D006155 ORTHO05D007529 5.7e-78 295.0 185 75.7
ATR0787G199 Amborella trichopoda HOM05D006155 ORTHO05D007529 1.1e-76 290.8 204 66.2
MBI07_g08907_MAGBIO Magnolia biondii HOM05D006155 ORTHO05D007529 5.3e-76 288.5 165 81.8
Sc04g0004680 Simmondsia chinensis HOM05D006155 ORTHO05D007529 3.2e-73 279.3 164 78.0
SMO165G0032 Selaginella moellendorffii HOM05D006155 ORTHO05D007529 4.0e-71 272.3 216 59.3
CDE01G0085 Ceratophyllum demersum HOM05D006155 ORTHO05D007529 1.0e-66 257.7 231 55.4
Pp3c17_6550 Physcomitrium patens HOM05D006155 ORTHO05D007529 2.9e-66 256.1 215 56.7
Pp3c2_6750 Physcomitrium patens HOM05D006155 ORTHO05D007529 1.2e-64 250.8 232 51.7
TAR365G0649 Trochodendron aralioides HOM05D006155 ORTHO05D007529 9.8e-54 214.5 141 70.9
LjContig00022g0011299 Lotus japonicus HOM05D006155 ORTHO05D007529 6.3e-53 211.8 179 60.3
MCO11G090 Micromonas commoda HOM05D006155 ORTHO05D007529 1.2e-43 181.0 221 45.7
CiPaw.01G175800 Carya illinoinensis HOM05D006155 ORTHO05D007529 3.5e-43 179.5 101 79.2
Psat6g138760 Pisum sativum HOM05D006155 ORTHO05D007529 3.0e-42 176.4 125 65.6
Cre03.g193000 Chlamydomonas reinhardtii HOM05D006155 ORTHO05D007529 1.1e-41 174.5 210 44.8
QL06p021877 Quercus lobata HOM05D006155 ORTHO05D007529 9.2e-36 154.8 106 67.9
SGA_v2.0_scaffold31G12610 Striga asiatica HOM05D006155 ORTHO05D007529 3.5e-35 152.9 210 42.9
SMO115G0208 Selaginella moellendorffii HOM05D006155 ORTHO05D007529 8.6e-34 148.3 214 39.3
AUR62035887 Chenopodium quinoa HOM05D006155 ORTHO05D007529 6.2e-32 142.1 83 79.5
Hma1.2p1_0042F.1_g025660 Hydrangea macrophylla HOM05D006155 ORTHO05D007529 1.4e-31 141.0 85 76.5
Hma1.2p1_0144F.1_g065125 Hydrangea macrophylla HOM05D006155 ORTHO05D007529 1.4e-31 141.0 85 76.5
Rhsim09G0043000 Rhododendron simsii HOM05D006155 ORTHO05D007529 5.2e-31 139.0 118 61.0
Zm00001eb191500 Zea mays HOM05D006155 ORTHO05D007529 1.7e-29 134.0 95 67.4
Lj5g0004239 Lotus japonicus HOM05D006155 ORTHO05D007529 5.4e-28 129.0 133 53.4
Lj5g0006737 Lotus japonicus HOM05D006155 ORTHO05D007529 5.4e-28 129.0 133 53.4
SEGI_12787 Sequoiadendron giganteum HOM05D006155 ORTHO05D007529 1.6e-27 127.5 98 66.3
Rhsim09G0041400 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.2e-24 117.9 79 72.2
Actinidia37388 Actinidia chinensis HOM05D006155 ORTHO05D007529 1.7e-21 107.5 62 79.0
SEGI_32209 Sequoiadendron giganteum HOM05D006155 ORTHO05D007529 1.1e-20 104.8 82 64.6
SGA_v2.0_scaffold31G12618 Striga asiatica HOM05D006155 ORTHO05D007529 2.3e-18 97.1 196 34.2
Rhsim09G0048000 Rhododendron simsii HOM05D000029 ORTHO05D002162 2.5e-17 93.6 95 53.7
Cre01.g025100 Chlamydomonas reinhardtii HOM05D006155 ORTHO05D007529 3.3e-17 93.2 171 35.1
AUR62035886 Chenopodium quinoa HOM05D006155 ORTHO05D007529 9.6e-17 91.7 55 74.5
PRCOL_00006483 Prasinoderma coloniale HOM05D005540 ORTHO05D006932 4.7e-16 89.4 181 34.3
SalBow7G2104 Salvia bowleyana HOM05D000708 ORTHO05D001418 2.2e-13 80.5 48 75.0
C09p23060 Brassica napus HOM05D006155 ORTHO05D007529 9.6e-09 65.1 58 56.9
Cc05_g08290 Coffea canephora HOM05D001660 ORTHO05D003277 3.1e-07 60.1 225 25.8
CsaV3_1G011810 Cucumis sativus L. HOM05D001660 ORTHO05D003277 2.6e-06 57.0 227 24.2
MELO3C002558.2 Cucumis melo HOM05D001660 ORTHO05D003277 5.8e-06 55.8 227 24.7


User provided reference genes

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