Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0021801 Helianthus annuus HOM05D000462 ORTHO05D005846 3.8e-72 274.6 130 100.0
Lsat_1_v5_gn_7_33120 Lactuca sativa HOM05D000462 ORTHO05D005846 7.3e-31 137.5 104 64.4
Lsat_1_v5_gn_5_59060 Lactuca sativa HOM05D000462 ORTHO05D005846 1.4e-26 123.2 103 57.3
ECA236G1772 Erigeron canadensis HOM05D000462 ORTHO05D005846 4.1e-26 121.7 102 57.8
ECA240G2690 Erigeron canadensis HOM05D000462 ORTHO05D005846 4.1e-26 121.7 105 57.1
HanXRQChr13g0411631 Helianthus annuus HOM05D000462 ORTHO05D005846 6.0e-25 117.9 107 55.1
Dinv43525 Davidia involucrata HOM05D000462 ORTHO05D005846 1.3e-19 100.1 102 47.1
CSS0047566 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 1.4e-18 96.7 104 44.2
CSS0030224 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 2.4e-18 95.9 104 44.2
Sed0009318 Sechium edule HOM05D000462 ORTHO05D005846 9.2e-18 94.0 103 47.6
CSS0023532 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 1.2e-17 93.6 103 43.7
Hma1.2p1_0353F.1_g133250 Hydrangea macrophylla HOM05D000462 ORTHO05D005846 2.7e-17 92.4 118 40.7
Sed0002685 Sechium edule HOM05D000462 ORTHO05D005846 3.5e-17 92.0 103 43.7
MELO3C006216.2 Cucumis melo HOM05D000462 ORTHO05D005846 1.7e-16 89.7 103 43.7
Peaxi162Scf00907g00226 Petunia axillaris HOM05D000462 ORTHO05D005846 1.7e-16 89.7 101 43.6
ClCG05G002510 Citrullus lanatus HOM05D000462 ORTHO05D005846 2.3e-16 89.4 103 42.7
Peaxi162Scf00907g00221 Petunia axillaris HOM05D000462 ORTHO05D005846 2.3e-16 89.4 101 43.6
Actinidia21593 Actinidia chinensis HOM05D000462 ORTHO05D005846 3.0e-16 89.0 102 41.2
FvH4_6g35582 Fragaria vesca HOM05D000462 ORTHO05D005846 3.9e-16 88.6 91 46.2
FAN14G2914 Fragaria x ananassa HOM05D000462 ORTHO05D005846 3.9e-16 88.6 91 46.2
Cfa010675 Carpinus fangiana HOM05D000462 ORTHO05D005846 5.1e-16 88.2 105 43.8
Haze_03590 Corylus avellana HOM05D000462 ORTHO05D005846 5.1e-16 88.2 105 44.8
PSO017G2480 Papaver somniferum HOM05D000462 ORTHO05D005846 8.7e-16 87.4 101 39.6
Nn1g09754 Nelumbo nucifera HOM05D000462 ORTHO05D005846 1.1e-15 87.0 103 39.8
MSTRG.17069 Avicennia marina HOM05D000462 ORTHO05D005846 1.9e-15 86.3 118 41.5
FAN14G3081 Fragaria x ananassa HOM05D000462 ORTHO05D005846 3.3e-15 85.5 128 34.4
TAR374G1078 Trochodendron aralioides HOM05D000462 ORTHO05D005846 3.3e-15 85.5 103 39.8
GSVIVG01019293001 Vitis vinifera HOM05D000462 ORTHO05D005846 3.3e-15 85.5 100 41.0
CsaV3_3G009950 Cucumis sativus L. HOM05D000462 ORTHO05D005846 4.3e-15 85.1 103 42.7
Zm00001eb421100 Zea mays HOM05D000462 ORTHO05D005846 4.3e-15 85.1 103 38.8
Aqoxy3G00515 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 5.6e-15 84.7 103 42.7
Aqoxy3G02219 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 5.6e-15 84.7 103 41.7
CiPaw.13G054400 Carya illinoinensis HOM05D000462 ORTHO05D005846 5.6e-15 84.7 118 39.0
FvH4_6g35581 Fragaria vesca HOM05D000462 ORTHO05D005846 5.6e-15 84.7 99 40.4
Prupe.2G100300 Prunus persica HOM05D000462 ORTHO05D005846 5.6e-15 84.7 103 39.8
Cc00_g12640 Coffea canephora HOM05D000462 ORTHO05D005846 7.3e-15 84.3 102 39.2
MD07G1080300 Malus domestica HOM05D000462 ORTHO05D005846 7.3e-15 84.3 103 40.8
Hund26858 Selenicereus undatus HOM05D000462 ORTHO05D005846 7.3e-15 84.3 104 40.4
PSO782G4146 Papaver somniferum HOM05D000462 ORTHO05D005846 1.3e-14 83.6 101 38.6
ClCG05G011530 Citrullus lanatus HOM05D000462 ORTHO05D005846 1.6e-14 83.2 102 40.2
CAN.G992.17 Capsicum annuum HOM05D000462 ORTHO05D005846 2.1e-14 82.8 100 42.0
Prupe.2G104700 Prunus persica HOM05D000462 ORTHO05D005846 2.8e-14 82.4 117 35.9
Rhsim07G0047100 Rhododendron simsii HOM05D000462 ORTHO05D005846 2.8e-14 82.4 105 41.9
Rhsim07G0047200 Rhododendron simsii HOM05D000462 ORTHO05D005846 2.8e-14 82.4 103 40.8
PSO063G2746 Papaver somniferum HOM05D000462 ORTHO05D005846 3.6e-14 82.0 101 37.6
DCAR_029565 Daucus carota HOM05D000462 ORTHO05D005846 8.1e-14 80.9 121 39.7
EL10Ac4g07924 Beta vulgaris HOM05D000462 ORTHO05D005846 1.1e-13 80.5 104 40.4
Nn3g19412 Nelumbo nucifera HOM05D000462 ORTHO05D005846 1.1e-13 80.5 103 38.8
Nn3g19417 Nelumbo nucifera HOM05D000462 ORTHO05D005846 1.1e-13 80.5 103 38.8
Solyc07g017470.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 1.1e-13 80.5 99 42.4
AUR62031622 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.4e-13 80.1 105 42.9
Phvul.002G100800 Phaseolus vulgaris HOM05D000462 ORTHO05D005846 1.4e-13 80.1 112 36.6
RcHm_v2.0_Chr2g0147401 Rosa chinensis HOM05D000462 ORTHO05D005846 1.4e-13 80.1 114 36.0
Migut.N01673 Erythranthe guttata HOM05D000462 ORTHO05D005846 1.8e-13 79.7 104 42.3
FAN10G1386 Fragaria x ananassa HOM05D000462 ORTHO05D005846 2.4e-13 79.3 104 33.7
PSO478G1321 Papaver somniferum HOM05D000462 ORTHO05D005846 2.4e-13 79.3 101 35.6
EL10Ac4g07923 Beta vulgaris HOM05D000462 ORTHO05D005846 3.1e-13 79.0 105 42.9
Eucgr.E01753 Eucalyptus grandis HOM05D000462 ORTHO05D005846 4.0e-13 78.6 103 42.7
FvH4_7g07720 Fragaria vesca HOM05D000462 ORTHO05D005846 4.0e-13 78.6 104 33.7
FAN03G2319 Fragaria x ananassa HOM05D000462 ORTHO05D005846 4.0e-13 78.6 104 33.7
FAN06G2574 Fragaria x ananassa HOM05D000462 ORTHO05D005846 4.0e-13 78.6 104 33.7
Glyma.07G224100 Glycine max HOM05D000462 ORTHO05D005846 4.0e-13 78.6 83 43.4
MD02G1233300 Malus domestica HOM05D000462 ORTHO05D005846 4.0e-13 78.6 103 38.8
RcHm_v2.0_Chr2g0147411 Rosa chinensis HOM05D000462 ORTHO05D005846 5.3e-13 78.2 91 41.8
Solyc01g081400.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 5.3e-13 78.2 103 41.7
Sopen01g032970 Solanum pennellii HOM05D000462 ORTHO05D005846 5.3e-13 78.2 103 41.7
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 6.9e-13 77.8 105 41.9
vmacro13593 Vaccinium macrocarpon HOM05D000462 ORTHO05D005846 6.9e-13 77.8 104 39.4
Nitab4.5_0000792g0060 Nicotiana tabacum HOM05D000462 ORTHO05D005846 1.2e-12 77.0 102 43.1
Migut.N01672 Erythranthe guttata HOM05D000462 ORTHO05D005846 1.5e-12 76.6 105 37.1
Ciclev10033936m.g Citrus clementina HOM05D000462 ORTHO05D005846 2.0e-12 76.3 86 45.3
PGSC0003DMG400042622 Solanum tuberosum HOM05D000462 ORTHO05D005846 2.0e-12 76.3 100 39.0
Ca_18787_v3 Cicer arietinum L. HOM05D000462 ORTHO05D005846 2.6e-12 75.9 83 45.8
Nitab4.5_0003123g0040 Nicotiana tabacum HOM05D000462 ORTHO05D011162 2.6e-12 75.9 99 37.4
PGSC0003DMG400001798 Solanum tuberosum HOM05D000462 ORTHO05D005846 2.6e-12 75.9 103 40.8
PGSC0003DMG400020979 Solanum tuberosum HOM05D000462 ORTHO05D005846 2.6e-12 75.9 103 40.8
Solyc01g150140.1 Solanum lycopersicum HOM05D000462 ORTHO05D005846 3.4e-12 75.5 104 39.4
Atru.chr2.1657 Acer truncatum HOM05D000462 ORTHO05D005846 4.4e-12 75.1 101 37.6
Os04g0386900 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 4.4e-12 75.1 105 34.3
Nitab4.5_0006461g0020 Nicotiana tabacum HOM05D000462 ORTHO05D005846 5.8e-12 74.7 98 44.9
Peaxi162Scf00245g00411 Petunia axillaris HOM05D000462 ORTHO05D005846 7.6e-12 74.3 116 36.2
HPP92_014959 Vanilla planifolia HOM05D000462 ORTHO05D005846 7.6e-12 74.3 103 36.9
TPR.G34026 Trifolium pratense HOM05D000462 ORTHO05D005846 9.9e-12 73.9 100 39.0
Migut.N01674 Erythranthe guttata HOM05D000462 ORTHO05D005846 2.2e-11 72.8 104 39.4
PGR042G2077 Punica granatum HOM05D000462 ORTHO05D005846 2.2e-11 72.8 92 41.3
DCAR_029563 Daucus carota HOM05D000462 ORTHO05D005846 2.9e-11 72.4 99 37.4
Lalb_Chr09g0328911 Lupinus albus HOM05D000462 ORTHO05D005846 2.9e-11 72.4 104 39.4
Prupe.2G104300 Prunus persica HOM05D000462 ORTHO05D005846 2.9e-11 72.4 103 35.0
Cc08_g05580 Coffea canephora HOM05D000462 ORTHO05D005846 3.8e-11 72.0 118 33.1
VMungo0251G1006 Vigna mungo HOM05D000462 ORTHO05D005846 3.8e-11 72.0 94 38.3
Oeu039097.1 Olea europaea HOM05D000462 ORTHO05D005846 4.9e-11 71.6 91 41.8
CAN.G206.135 Capsicum annuum HOM05D000462 ORTHO05D005846 8.4e-11 70.9 102 35.3
Medtr4g083390 Medicago truncatula HOM05D000462 ORTHO05D005846 8.4e-11 70.9 97 40.2
CANSAT78G2521 Cannabis sativa HOM05D000462 ORTHO05D005846 1.1e-10 70.5 126 34.9
RcHm_v2.0_Chr1g0342371 Rosa chinensis HOM05D000462 ORTHO05D005846 1.1e-10 70.5 91 36.3
unitig_750.g28427 Utricularia gibba HOM05D000462 ORTHO05D005846 1.1e-10 70.5 104 39.4
Cpa.g.sc73.65 Carica papaya HOM05D000462 ORTHO05D005846 1.4e-10 70.1 90 37.8
DCAR_029566 Daucus carota HOM05D000462 ORTHO05D005846 1.4e-10 70.1 104 38.5
Aqoxy2G03796 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 1.9e-10 69.7 83 43.4
arahy.Tifrunner.gnm1.ann1.XCU387 Arachis hypogaea HOM05D000462 ORTHO05D005846 2.4e-10 69.3 94 38.3
AUR62020518 Chenopodium quinoa HOM05D000462 ORTHO05D005846 2.4e-10 69.3 104 39.4
unitig_26.g8840 Utricularia gibba HOM05D000462 ORTHO05D005846 3.2e-10 68.9 87 37.9
Oeu013594.1 Olea europaea HOM05D000462 ORTHO05D005846 4.2e-10 68.6 90 42.2
RcHm_v2.0_Chr1g0342401 Rosa chinensis HOM05D000462 ORTHO05D005846 5.4e-10 68.2 90 40.0
Nitab4.5_0000050g0130 Nicotiana tabacum HOM05D000462 ORTHO05D005846 9.3e-10 67.4 78 41.0
Psat7g132920 Pisum sativum HOM05D000462 ORTHO05D005846 9.3e-10 67.4 76 39.5
SalBow4G2124 Salvia bowleyana HOM05D000462 ORTHO05D005846 9.3e-10 67.4 110 33.6
SalBow4G2827 Salvia bowleyana HOM05D000462 ORTHO05D005846 9.3e-10 67.4 110 33.6
arahy.Tifrunner.gnm1.ann1.ES60GW Arachis hypogaea HOM05D000462 ORTHO05D005846 1.6e-09 66.6 94 37.2
unitig_749.g14241 Utricularia gibba HOM05D000462 ORTHO05D005846 1.6e-09 66.6 86 36.0
RcHm_v2.0_Chr1g0342491 Rosa chinensis HOM05D000462 ORTHO05D005846 2.1e-09 66.2 93 39.8
Sopen01g026530 Solanum pennellii HOM05D000462 ORTHO05D005846 2.7e-09 65.9 87 37.9
AUR62015684 Chenopodium quinoa HOM05D000462 ORTHO05D005846 3.5e-09 65.5 104 37.5
Cc08_g05560 Coffea canephora HOM05D000462 ORTHO05D005846 6.0e-09 64.7 84 39.3
FAN10G1699 Fragaria x ananassa HOM05D000462 ORTHO05D005846 6.0e-09 64.7 80 41.2
Aqoxy7G00268 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 7.8e-09 64.3 93 37.6
Peaxi162Scf00104g00047 Petunia axillaris HOM05D000462 ORTHO05D005846 1.3e-08 63.5 93 38.7
CAN.G992.16 Capsicum annuum HOM05D000462 ORTHO05D005846 5.1e-08 61.6 95 34.7
Cc08_g05570 Coffea canephora HOM05D000462 ORTHO05D005846 1.5e-07 60.1 87 35.6
SalBow4G1864 Salvia bowleyana HOM05D000462 ORTHO05D005846 4.3e-07 58.5 103 31.1
SalBow4G3150 Salvia bowleyana HOM05D000462 ORTHO05D005846 4.3e-07 58.5 103 31.1
Sc02g0004850 Simmondsia chinensis HOM05D000462 ORTHO05D005846 9.6e-07 57.4 79 35.4


User provided reference genes

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