Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0021681 Helianthus annuus HOM05D006991 ORTHO05D009188 1.9e-141 505.8 246 100.0
HanXRQChr04g0121651 Helianthus annuus HOM05D006991 ORTHO05D009188 1.3e-84 317.0 202 80.2
Lsat_1_v5_gn_7_5201 Lactuca sativa HOM05D006991 ORTHO05D009188 4.4e-77 292.0 202 72.8
ECA236G3544 Erigeron canadensis HOM05D006991 ORTHO05D009188 2.0e-74 283.1 202 70.8
DCAR_015941 Daucus carota HOM05D006991 ORTHO05D009188 2.0e-69 266.5 202 66.3
Cc02_g37710 Coffea canephora HOM05D006991 ORTHO05D009188 7.5e-69 264.6 202 65.8
PGSC0003DMG400000156 Solanum tuberosum HOM05D006991 ORTHO05D009188 1.1e-67 260.8 201 65.2
Nitab4.5_0009210g0040 Nicotiana tabacum HOM05D006991 ORTHO05D009188 1.4e-67 260.4 201 64.2
Eucgr.E00177 Eucalyptus grandis HOM05D006991 ORTHO05D009188 1.8e-67 260.0 194 66.5
CSS0011179 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 4.1e-67 258.8 204 66.7
Dinv43786 Davidia involucrata HOM05D006991 ORTHO05D009188 4.1e-67 258.8 204 66.7
Nitab4.5_0002160g0070 Nicotiana tabacum HOM05D006991 ORTHO05D009188 4.1e-67 258.8 201 63.7
Hma1.2p1_0001F.1_g001590 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 9.2e-67 257.7 204 64.7
CAN.G78.50 Capsicum annuum HOM05D006991 ORTHO05D009188 1.2e-66 257.3 201 63.2
Sopen01g038120 Solanum pennellii HOM05D006991 ORTHO05D009188 2.0e-66 256.5 201 64.2
Lj9A581T68 Lonicera japonica HOM05D006991 ORTHO05D009188 3.5e-66 255.8 200 64.5
Peaxi162Scf00020g00011 Petunia axillaris HOM05D006991 ORTHO05D009188 5.9e-66 255.0 200 64.0
CSS0000914 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 2.9e-65 252.7 192 67.7
vmacro13305 Vaccinium macrocarpon HOM05D006991 ORTHO05D009188 2.9e-65 252.7 200 65.0
Rhsim07G0017800 Rhododendron simsii HOM05D006991 ORTHO05D009188 3.8e-65 252.3 228 61.4
Sed0028010 Sechium edule HOM05D006991 ORTHO05D009188 3.8e-65 252.3 191 63.4
Carub.0001s0044 Capsella rubella HOM05D006991 ORTHO05D009188 6.6e-65 251.5 199 64.3
RcHm_v2.0_Chr1g0354041 Rosa chinensis HOM05D006991 ORTHO05D009188 6.6e-65 251.5 204 62.3
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 1.5e-64 250.4 204 63.2
BolC8t52898H Brassica oleracea HOM05D006991 ORTHO05D009188 1.5e-64 250.4 204 63.2
Potri.002G157400 Populus trichocarpa HOM05D006991 ORTHO05D009188 1.5e-64 250.4 205 61.0
PGR042G0621 Punica granatum HOM05D006991 ORTHO05D009188 1.5e-64 250.4 205 60.5
Thhalv10007047m.g Eutrema salsugineum HOM05D006991 ORTHO05D009188 2.5e-64 249.6 204 61.8
HanXRQChr03g0092981 Helianthus annuus HOM05D006991 ORTHO05D226355 5.6e-64 248.4 118 99.2
CsaV3_3G009060 Cucumis sativus L. HOM05D006991 ORTHO05D009188 7.3e-64 248.1 191 61.3
BraA09t42261Z Brassica rapa HOM05D006991 ORTHO05D009188 9.5e-64 247.7 204 61.8
FvH4_7g13830 Fragaria vesca HOM05D006991 ORTHO05D009188 1.2e-63 247.3 204 60.3
AL1G10570 Arabidopsis lyrata HOM05D006991 ORTHO05D009188 1.6e-63 246.9 204 62.3
MELO3C006127.2 Cucumis melo HOM05D006991 ORTHO05D009188 1.6e-63 246.9 191 61.3
AT1G01770 Arabidopsis thaliana HOM05D006991 ORTHO05D009188 2.1e-63 246.5 204 62.3
TWI23G0867 Tripterygium wilfordii HOM05D006991 ORTHO05D009188 2.1e-63 246.5 203 61.1
TAR375G0043 Trochodendron aralioides HOM05D006991 ORTHO05D009188 2.1e-63 246.5 197 63.5
Manes.01G259800 Manihot esculenta HOM05D006991 ORTHO05D009188 2.8e-63 246.1 205 61.0
SGA_v2.0_scaffold43G16441 Striga asiatica HOM05D006991 ORTHO05D009188 3.6e-63 245.7 203 61.6
CiPaw.02G028700 Carya illinoinensis HOM05D006991 ORTHO05D009188 4.7e-63 245.4 208 59.1
FAN03G2057 Fragaria x ananassa HOM05D006991 ORTHO05D009188 4.7e-63 245.4 204 59.3
Sp1g00530 Schrenkiella parvula HOM05D006991 ORTHO05D009188 4.7e-63 245.4 204 60.3
Nn6g33525 Nelumbo nucifera HOM05D006991 ORTHO05D009188 6.1e-63 245.0 191 63.4
CANSAT56G3382 Cannabis sativa HOM05D006991 ORTHO05D009188 8.0e-63 244.6 205 60.5
GSVIVG01026850001 Vitis vinifera HOM05D006991 ORTHO05D009188 8.0e-63 244.6 205 60.5
Prupe.2G164100 Prunus persica HOM05D006991 ORTHO05D009188 1.0e-62 244.2 205 59.5
Glyma.07G073500 Glycine max HOM05D006991 ORTHO05D009188 1.4e-62 243.8 206 60.2
Lj3g0006815 Lotus japonicus HOM05D006991 ORTHO05D009188 2.3e-62 243.0 205 60.0
THA.LOC104801448 Tarenaya hassleriana HOM05D006991 ORTHO05D009188 2.3e-62 243.0 204 58.3
Ciclev10019238m.g Citrus clementina HOM05D006991 ORTHO05D009188 4.0e-62 242.3 233 54.5
MSTRG.28216 Avicennia marina HOM05D006991 ORTHO05D009188 5.2e-62 241.9 203 60.6
Migut.N01431 Erythranthe guttata HOM05D006991 ORTHO05D009188 5.2e-62 241.9 202 59.9
Gohir.A07G142900 Gossypium hirsutum HOM05D006991 ORTHO05D009188 5.2e-62 241.9 232 54.3
Gohir.D07G148700 Gossypium hirsutum HOM05D006991 ORTHO05D009188 5.2e-62 241.9 232 54.3
Gorai.001G170100 Gossypium raimondii HOM05D006991 ORTHO05D009188 5.2e-62 241.9 232 54.3
Phvul.010G096000 Phaseolus vulgaris HOM05D006991 ORTHO05D009188 5.2e-62 241.9 205 60.0
MD01G1054400 Malus domestica HOM05D006991 ORTHO05D009188 8.9e-62 241.1 205 59.0
VMungo0331G1855 Vigna mungo HOM05D006991 ORTHO05D009188 1.2e-61 240.7 205 59.5
Haze_15467 Corylus avellana HOM05D006991 ORTHO05D009188 1.5e-61 240.4 201 60.7
TPR.G4402 Trifolium pratense HOM05D006991 ORTHO05D009188 1.5e-61 240.4 205 59.0
Actinidia10005 Actinidia chinensis HOM05D006991 ORTHO05D009188 2.0e-61 240.0 203 61.6
Aa31LG1G11140 Aethionema arabicum HOM05D006991 ORTHO05D009188 2.6e-61 239.6 204 58.8
Cfa003952 Carpinus fangiana HOM05D006991 ORTHO05D009188 2.6e-61 239.6 201 61.7
Lalb_Chr04g0256761 Lupinus albus HOM05D006991 ORTHO05D009188 2.6e-61 239.6 205 60.0
ATR0680G083 Amborella trichopoda HOM05D006991 ORTHO05D009188 3.4e-61 239.2 207 58.0
ClCG05G001680 Citrullus lanatus HOM05D006991 ORTHO05D009188 4.4e-61 238.8 191 60.2
Psat4g154080 Pisum sativum HOM05D006991 ORTHO05D009188 4.4e-61 238.8 205 60.0
Duzib138G0243 Durio zibethinus HOM05D006991 ORTHO05D009188 5.7e-61 238.4 204 59.3
Medtr8g031480 Medicago truncatula HOM05D006991 ORTHO05D009188 5.7e-61 238.4 206 57.8
AUR62004323 Chenopodium quinoa HOM05D006991 ORTHO05D009188 9.8e-61 237.7 205 60.5
COL.COLO4_12678 Corchorus olitorius HOM05D006991 ORTHO05D009188 9.8e-61 237.7 204 58.8
Thecc.01G363100 Theobroma cacao HOM05D006991 ORTHO05D009188 9.8e-61 237.7 205 58.5
CDE05G1529 Ceratophyllum demersum HOM05D006991 ORTHO05D009188 1.7e-60 236.9 204 59.3
Os07g0457300 Oryza sativa ssp. japonica HOM05D006991 ORTHO05D009188 1.7e-60 236.9 202 57.9
QL08p049512 Quercus lobata HOM05D006991 ORTHO05D009188 1.7e-60 236.9 205 59.5
Solyc01g094330.3 Solanum lycopersicum HOM05D006991 ORTHO05D009188 1.7e-60 236.9 229 55.5
PSO063G6634 Papaver somniferum HOM05D006991 ORTHO05D009188 2.2e-60 236.5 202 60.4
Aqoxy5G03423_Aqoxy5G03424 Aquilegia oxysepala HOM05D006991 ORTHO05D009188 2.9e-60 236.1 207 60.9
Ca_23659_v3 Cicer arietinum L. HOM05D006991 ORTHO05D009188 6.4e-60 235.0 205 57.1
Atru.chr5.484 Acer truncatum HOM05D006991 ORTHO05D009188 1.8e-59 233.4 193 60.6
Ah.05g176510 Amaranthus hybridus HOM05D006991 ORTHO05D009188 1.8e-59 233.4 205 59.0
SalBow5G3488 Salvia bowleyana HOM05D006991 ORTHO05D009188 2.4e-59 233.0 203 60.1
SalBow5G3803 Salvia bowleyana HOM05D006991 ORTHO05D009188 2.4e-59 233.0 203 60.1
FAN10G0464 Fragaria x ananassa HOM05D006991 ORTHO05D009188 4.1e-59 232.3 231 52.8
unitig_748.g7107 Utricularia gibba HOM05D006991 ORTHO05D009188 1.2e-58 230.7 191 60.2
FAN06G2381 Fragaria x ananassa HOM05D006991 ORTHO05D009188 7.8e-58 228.0 242 50.4
Sc26g0001000 Simmondsia chinensis HOM05D006991 ORTHO05D009188 1.9e-56 223.4 198 59.1
Hund27298 Selenicereus undatus HOM05D006991 ORTHO05D002850 7.3e-56 221.5 192 59.4
Zm00001eb306550 Zea mays HOM05D006991 ORTHO05D009188 7.3e-56 221.5 204 57.4
Cpa.g.sc18.226 Carica papaya HOM05D006991 ORTHO05D009188 2.8e-55 219.5 209 55.5
HPP92_004979 Vanilla planifolia HOM05D006991 ORTHO05D009188 3.6e-55 219.2 191 57.6
FAN01G0340 Fragaria x ananassa HOM05D006991 ORTHO05D009188 1.0e-54 217.6 224 53.1
FAN06G3007 Fragaria x ananassa HOM05D006991 ORTHO05D009188 1.0e-54 217.6 224 53.1
Pp3c9_2540 Physcomitrium patens HOM05D006991 ORTHO05D009188 4.0e-54 215.7 203 54.2
CARHR000550 Cardamine hirsuta HOM05D006991 ORTHO05D009188 4.9e-52 208.8 191 58.1
SMO164G0214 Selaginella moellendorffii HOM05D006991 ORTHO05D009188 1.1e-51 207.6 191 52.4
EL10Ac1g00536 Beta vulgaris HOM05D006991 ORTHO05D009188 7.3e-48 194.9 184 54.3
arahy.Tifrunner.gnm1.ann1.NT7Z8Q Arachis hypogaea HOM05D006991 ORTHO05D009188 1.2e-45 187.6 198 51.0
Sabra02G0125100 Salix brachista HOM05D006991 ORTHO05D009188 8.6e-41 171.4 167 54.5
arahy.Tifrunner.gnm1.ann1.JH251T Arachis hypogaea HOM05D006991 ORTHO05D009188 1.5e-37 160.6 185 46.5
RcHm_v2.0_Chr1g0354021 Rosa chinensis HOM05D006991 ORTHO05D009188 9.9e-37 157.9 190 46.3
HanXRQChr01g0025441 Helianthus annuus HOM05D006991 ORTHO05D009188 5.4e-35 152.1 72 95.8
AUR62003727 Chenopodium quinoa HOM05D001417 ORTHO05D001496 6.2e-31 138.7 108 63.9
QL09p021383 Quercus lobata HOM05D006991 ORTHO05D009188 3.4e-29 132.9 120 55.8
Hma1.2p1_0001F.1_g001600 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 5.1e-25 119.0 65 81.5
MBI18_g09765_MAGBIO Magnolia biondii HOM05D006991 ORTHO05D009188 4.8e-15 85.9 40 87.5
AagrBONN_evm.TU.Sc2ySwM_344.4948 Anthoceros agrestis HOM05D006991 ORTHO05D009188 5.3e-14 82.4 39 84.6
CAN.G226.8 Capsicum annuum HOM05D006991 ORTHO05D000001 2.0e-13 80.5 54 68.5
EL10Ac3g06779 Beta vulgaris HOM05D006991 ORTHO05D009188 2.2e-12 77.0 52 67.3
EL10Ac1g02136 Beta vulgaris HOM05D006991 ORTHO05D009188 5.5e-11 72.4 60 60.0


User provided reference genes

Program Settings