Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0020631 Helianthus annuus HOM05D005423 ORTHO05D006223 1.8e-121 439.5 255 100.0
Lsat_1_v5_gn_1_91741 Lactuca sativa HOM05D005423 ORTHO05D006223 1.4e-65 253.8 197 70.6
Lj1P1155T48 Lonicera japonica HOM05D005423 ORTHO05D006223 4.7e-42 175.6 161 52.8
Nitab4.5_0006659g0010 Nicotiana tabacum HOM05D005423 ORTHO05D006223 1.7e-39 167.2 178 50.6
Nitab4.5_0004015g0040 Nicotiana tabacum HOM05D005423 ORTHO05D006223 2.2e-39 166.8 145 56.6
Rhsim13G0126500 Rhododendron simsii HOM05D005423 ORTHO05D006223 8.4e-39 164.9 172 52.3
SGA_v2.0_scaffold1G00298 Striga asiatica HOM05D005423 ORTHO05D006223 1.1e-38 164.5 196 45.9
Hma1.2p1_0410F.1_g147050 Hydrangea macrophylla HOM05D005423 ORTHO05D006223 7.1e-38 161.8 157 54.8
Cfa000754 Carpinus fangiana HOM05D005423 ORTHO05D006223 4.6e-37 159.1 190 47.4
Manes.03G066900 Manihot esculenta HOM05D005423 ORTHO05D006223 4.6e-37 159.1 181 49.2
TAR636G0950 Trochodendron aralioides HOM05D005423 ORTHO05D006223 1.0e-36 157.9 147 54.4
CAN.G84.20 Capsicum annuum HOM05D005423 ORTHO05D006223 2.3e-36 156.8 164 51.8
Migut.M01932 Erythranthe guttata HOM05D005423 ORTHO05D006223 5.1e-36 155.6 155 54.8
FvH4_3g11440 Fragaria vesca HOM05D005423 ORTHO05D006223 6.6e-36 155.2 161 51.6
MD00G1097400 Malus domestica HOM05D005423 ORTHO05D006223 1.5e-35 154.1 143 55.2
FAN16G1003 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.9e-35 153.7 144 54.2
Duzib160G0446 Durio zibethinus HOM05D005423 ORTHO05D006223 6.2e-34 148.7 151 53.0
Potri.001G440800 Populus trichocarpa HOM05D005423 ORTHO05D006223 6.2e-34 148.7 166 48.8
CiPaw.09G149100 Carya illinoinensis HOM05D005423 ORTHO05D006223 8.1e-34 148.3 163 50.9
PGSC0003DMG400025363 Solanum tuberosum HOM05D005423 ORTHO05D006223 8.1e-34 148.3 158 49.4
Prupe.4G102300 Prunus persica HOM05D005423 ORTHO05D006223 2.4e-33 146.7 143 52.4
CANSAT35G1706 Cannabis sativa HOM05D005423 ORTHO05D006223 6.9e-33 145.2 156 49.4
Solyc11g072680.1 Solanum lycopersicum HOM05D005423 ORTHO05D006223 9.0e-33 144.8 164 49.4
Sopen11g030350 Solanum pennellii HOM05D005423 ORTHO05D006223 9.0e-33 144.8 164 49.4
Thecc.06G005400 Theobroma cacao HOM05D005423 ORTHO05D006223 2.6e-32 143.3 164 51.2
TWI38G0231 Tripterygium wilfordii HOM05D005423 ORTHO05D006223 2.6e-32 143.3 160 46.9
AUR62028667 Chenopodium quinoa HOM05D005423 ORTHO05D006223 7.6e-32 141.7 161 44.1
Gohir.D02G104700 Gossypium hirsutum HOM05D005423 ORTHO05D006223 3.8e-31 139.4 170 47.6
Gorai.005G118900 Gossypium raimondii HOM05D005423 ORTHO05D006223 3.8e-31 139.4 170 47.6
Gohir.A02G088801 Gossypium hirsutum HOM05D005423 ORTHO05D006223 4.9e-31 139.0 170 47.6
MBI19_g30013_MAGBIO Magnolia biondii HOM05D005423 ORTHO05D006223 1.9e-30 137.1 141 49.6
QL05p063092 Quercus lobata HOM05D005423 ORTHO05D006223 2.4e-30 136.7 184 45.7
Ciclev10017493m.g Citrus clementina HOM05D005423 ORTHO05D006223 3.2e-30 136.3 155 44.5
Aqoxy2G01436 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 2.7e-29 133.3 157 45.9
AUR62028668 Chenopodium quinoa HOM05D005423 ORTHO05D006223 3.5e-29 132.9 190 40.0
Glyma.15G191500 Glycine max HOM05D005423 ORTHO05D006223 3.5e-29 132.9 158 46.2
Atru.chr10.659 Acer truncatum HOM05D005423 ORTHO05D006223 1.0e-28 131.3 158 46.2
Sc04g0008360 Simmondsia chinensis HOM05D005423 ORTHO05D006223 1.0e-28 131.3 161 46.6
AUR62008092 Chenopodium quinoa HOM05D005423 ORTHO05D006223 2.3e-28 130.2 161 41.6
Ca_02385_v3 Cicer arietinum L. HOM05D005423 ORTHO05D006223 3.9e-28 129.4 160 45.6
EL10Ac5g10610 Beta vulgaris HOM05D005423 ORTHO05D006223 8.7e-28 128.3 176 39.8
Haze_05969 Corylus avellana HOM05D005423 ORTHO05D006223 1.9e-27 127.1 154 42.9
AUR62008089 Chenopodium quinoa HOM05D005423 ORTHO05D006223 2.5e-27 126.7 155 42.6
AUR62008091 Chenopodium quinoa HOM05D005423 ORTHO05D006223 2.5e-27 126.7 155 41.9
Medtr2g047120 Medicago truncatula HOM05D005423 ORTHO05D006223 7.3e-27 125.2 173 40.5
Psat1g018720 Pisum sativum HOM05D005423 ORTHO05D006223 2.8e-26 123.2 155 43.2
Ah.02g124440 Amaranthus hybridus HOM05D005423 ORTHO05D006223 3.6e-26 122.9 147 43.5
Lj6g0018842 Lotus japonicus HOM05D005423 ORTHO05D006223 3.6e-26 122.9 163 45.4
FAN25G0767 Fragaria x ananassa HOM05D005423 ORTHO05D006223 3.1e-25 119.8 102 56.9
FAN21G0600 Fragaria x ananassa HOM05D005423 ORTHO05D006223 5.3e-25 119.0 100 56.0
Carub.0001s2910 Capsella rubella HOM05D005423 ORTHO05D006223 1.5e-24 117.5 147 39.5
TPR.G22906 Trifolium pratense HOM05D005423 ORTHO05D006223 1.5e-24 117.5 155 41.3
EL10Ac5g10674 Beta vulgaris HOM05D005423 ORTHO05D006223 2.6e-24 116.7 159 39.6
Sabra16G0300100 Salix brachista HOM05D005423 ORTHO05D006223 2.6e-24 116.7 131 47.3
BraA08t33095Z Brassica rapa HOM05D005423 ORTHO05D006223 3.4e-24 116.3 145 40.7
Oeu000496.1 Olea europaea HOM05D005423 ORTHO05D006223 3.4e-24 116.3 82 63.4
Carub.0006s3088 Capsella rubella HOM05D005423 ORTHO05D006223 4.5e-24 115.9 164 37.8
CDE04G0856 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 4.5e-24 115.9 142 41.5
MBI19_g33491_MAGBIO Magnolia biondii HOM05D005423 ORTHO05D006223 4.5e-24 115.9 124 50.8
COL.COLO4_26869 Corchorus olitorius HOM05D005423 ORTHO05D006223 5.8e-24 115.5 204 40.7
Sabra16G0298100 Salix brachista HOM05D005423 ORTHO05D006223 5.8e-24 115.5 131 46.6
Oeu063151.1 Olea europaea HOM05D005423 ORTHO05D006223 7.6e-24 115.2 98 57.1
BcaB04g18206 Brassica carinata HOM05D005423 ORTHO05D006223 9.9e-24 114.8 145 39.3
A08p11040 Brassica napus HOM05D005423 ORTHO05D006223 9.9e-24 114.8 145 40.0
Lalb_Chr11g0073251 Lupinus albus HOM05D005423 ORTHO05D006223 9.9e-24 114.8 160 40.6
AL1G44970 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 1.3e-23 114.4 148 39.9
BcaC07g37806 Brassica carinata HOM05D005423 ORTHO05D006223 1.3e-23 114.4 145 39.3
BolC8t48195H Brassica oleracea HOM05D005423 ORTHO05D006223 1.3e-23 114.4 145 39.3
Thhalv10009325m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 1.3e-23 114.4 161 38.5
PSO782G2497 Papaver somniferum HOM05D005423 ORTHO05D006223 1.3e-23 114.4 145 42.1
EL10Ac5g10640 Beta vulgaris HOM05D005423 ORTHO05D006223 1.7e-23 114.0 184 35.3
Aa31LG6G12020 Aethionema arabicum HOM05D005423 ORTHO05D006223 3.8e-23 112.8 144 41.0
Sp1g26680 Schrenkiella parvula HOM05D005423 ORTHO05D006223 4.9e-23 112.5 148 38.5
Sc21g0002200 Simmondsia chinensis HOM05D005423 ORTHO05D006223 2.4e-22 110.2 145 43.4
CARHR030270 Cardamine hirsuta HOM05D005423 ORTHO05D006223 4.2e-22 109.4 152 37.5
AT1G30800 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 5.4e-22 109.0 150 37.3
THA.LOC104814335 Tarenaya hassleriana HOM05D005423 ORTHO05D006223 1.6e-21 107.5 137 40.1
Sc21g0002210 Simmondsia chinensis HOM05D005423 ORTHO05D006223 2.1e-21 107.1 145 42.1
BcaB01g00727 Brassica carinata HOM05D005423 ORTHO05D006223 4.6e-21 105.9 141 38.3
C08p24310 Brassica napus HOM05D005423 ORTHO05D006223 2.3e-20 103.6 137 37.2
BolC8t50049H Brassica oleracea HOM05D005423 ORTHO05D006223 2.3e-20 103.6 137 37.2
Phvul.009G218400 Phaseolus vulgaris HOM05D005423 ORTHO05D006223 3.0e-20 103.2 153 41.8
BcaC07g39399 Brassica carinata HOM05D005423 ORTHO05D006223 3.9e-20 102.8 137 37.2
A06p18470 Brassica napus HOM05D005423 ORTHO05D006223 3.9e-20 102.8 137 37.2
CDE04G2898 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 2.5e-19 100.1 181 34.8
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 1.8e-17 94.0 166 35.5
FAN23G0143 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.2e-16 91.3 100 49.0
Potri.011G155150 Populus trichocarpa HOM05D005423 ORTHO05D006223 4.5e-16 89.4 99 47.5
CARHR237890 Cardamine hirsuta HOM05D005423 ORTHO05D006223 1.7e-15 87.4 144 31.9
Thhalv10026388m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 2.2e-15 87.0 145 29.7
AUR62007135 Chenopodium quinoa HOM05D005423 ORTHO05D006223 2.9e-15 86.7 109 45.9
FvH4_5g18240 Fragaria vesca HOM05D005423 ORTHO05D006223 4.9e-15 85.9 101 46.5
Sp7g27780 Schrenkiella parvula HOM05D005423 ORTHO05D006223 4.9e-15 85.9 137 33.6
AL7G22260 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 8.4e-15 85.1 144 31.9
AT4G29980 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 1.4e-14 84.3 144 31.2
Carub.0007s1066 Capsella rubella HOM05D005423 ORTHO05D006223 2.5e-14 83.6 143 31.5
DCAR_001448 Daucus carota HOM05D005423 ORTHO05D006223 2.5e-14 83.6 147 36.1
FvH4_5g21920 Fragaria vesca HOM05D005423 ORTHO05D006223 2.5e-14 83.6 102 47.1
FAN18G3875 Fragaria x ananassa HOM05D005423 ORTHO05D006223 3.2e-14 83.2 101 46.5
PSO210G3101 Papaver somniferum HOM05D005423 ORTHO05D006223 5.5e-14 82.4 138 31.9
AT4G12950 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 7.1e-14 82.0 145 33.8
FvH4_1g24910 Fragaria vesca HOM05D005423 ORTHO05D006223 9.3e-14 81.6 100 44.0
BcaNung00507 Brassica carinata HOM05D005423 ORTHO05D006223 1.2e-13 81.3 144 29.9
Mapoly0033s0033 Marchantia polymorpha HOM05D005423 ORTHO05D006223 1.2e-13 81.3 157 33.1
A03p59360 Brassica napus HOM05D005423 ORTHO05D006223 4.6e-13 79.3 144 29.2
BraA03t14993Z Brassica rapa HOM05D005423 ORTHO05D006223 4.6e-13 79.3 144 29.2
C07p57390 Brassica napus HOM05D005423 ORTHO05D006223 1.0e-12 78.2 144 28.5
BolC7t46208H Brassica oleracea HOM05D005423 ORTHO05D006223 1.0e-12 78.2 144 28.5
Duzib043G0004 Durio zibethinus HOM05D005423 ORTHO05D006223 1.0e-12 78.2 149 40.3
DCAR_002955 Daucus carota HOM05D005423 ORTHO05D006223 1.9e-11 73.9 98 39.8
Sp7g28070 Schrenkiella parvula HOM05D005423 ORTHO05D006223 3.3e-11 73.2 141 31.2
Thhalv10027436m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 9.6e-11 71.6 128 29.7
A03p59580 Brassica napus HOM05D005423 ORTHO05D006223 1.8e-09 67.4 143 25.9
Pp3c3_10930 Physcomitrium patens HOM05D022662 ORTHO05D006223 2.4e-09 67.0 151 25.8
BraA03t15014Z Brassica rapa HOM05D005423 ORTHO05D006223 3.1e-09 66.6 143 26.6
Nn8g39654 Nelumbo nucifera HOM05D005423 ORTHO05D006223 1.5e-08 64.3 111 33.3
Aqoxy7G03258 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 2.6e-08 63.5 80 43.8
FvH4_6g29350 Fragaria vesca HOM05D005423 ORTHO05D006223 3.4e-08 63.2 75 46.7
Pp3c1_4130 Physcomitrium patens HOM05D022662 ORTHO05D006223 3.4e-08 63.2 151 27.8
BcaC07g40588 Brassica carinata HOM05D005423 ORTHO05D006223 4.5e-08 62.8 63 36.5
Pp3c13_8280 Physcomitrium patens HOM05D022662 ORTHO05D006223 1.0e-07 61.6 154 28.6
Thhalv10009974m.g Eutrema salsugineum HOM05D005305 ORTHO05D006394 1.3e-07 61.2 120 35.0
Mapoly0095s0061 Marchantia polymorpha HOM05D005423 ORTHO05D006223 2.2e-07 60.5 125 32.8
Pp3c3_3640 Physcomitrium patens HOM05D022662 ORTHO05D006223 2.9e-07 60.1 158 27.8
CARHR238100 Cardamine hirsuta HOM05D005423 ORTHO05D006223 5.0e-07 59.3 78 34.6
BcaC09g50401 Brassica carinata HOM05D005423 ORTHO05D006223 6.5e-07 58.9 63 36.5
FAN11G1050 Fragaria x ananassa HOM05D005423 ORTHO05D006223 6.5e-07 58.9 86 40.7
FAN03G0475 Fragaria x ananassa HOM05D005423 ORTHO05D006223 8.4e-07 58.5 86 40.7
FAN14G5542 Fragaria x ananassa HOM05D005423 ORTHO05D006223 8.4e-07 58.5 86 40.7
FAN18G0575 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.1e-06 58.2 86 40.7
Cpa.g.sc72.34 Carica papaya HOM05D005305 ORTHO05D006394 1.9e-06 57.4 109 33.9
Actinidia33832 Actinidia chinensis HOM05D005305 ORTHO05D006394 3.2e-06 56.6 162 28.4
Pp3c6_3400 Physcomitrium patens HOM05D005423 ORTHO05D006223 4.2e-06 56.2 153 26.8
Sp1g13500 Schrenkiella parvula HOM05D005305 ORTHO05D006394 4.2e-06 56.2 122 32.8
Lalb_Chr20g0119391 Lupinus albus HOM05D003663 ORTHO05D005327 7.2e-06 55.5 110 27.3
arahy.Tifrunner.gnm1.ann1.A4HJXM Arachis hypogaea HOM05D002727 ORTHO05D002856 9.3e-06 55.1 107 29.0
Ciclev10001162m.g Citrus clementina HOM05D005305 ORTHO05D006394 9.3e-06 55.1 107 29.9


User provided reference genes

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