Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0019861 Helianthus annuus HOM05D001653 ORTHO05D223388 4.3e-39 164.1 76 100.0
Lsat_1_v5_gn_2_45581 Lactuca sativa HOM05D001653 ORTHO05D001751 5.2e-13 77.4 39 89.7
ECA238G1066 Erigeron canadensis HOM05D001653 ORTHO05D001751 2.6e-12 75.1 39 87.2
Nn1g07801 Nelumbo nucifera HOM05D001653 ORTHO05D001751 3.4e-12 74.7 40 82.5
MSTRG.21956 Avicennia marina HOM05D001653 ORTHO05D001751 1.3e-11 72.8 40 82.5
Cc03_g07570 Coffea canephora HOM05D001653 ORTHO05D001751 1.3e-11 72.8 40 82.5
MBI07_g37089_MAGBIO Magnolia biondii HOM05D001653 ORTHO05D001751 1.3e-11 72.8 40 80.0
ClCG06G007680 Citrullus lanatus HOM05D001653 ORTHO05D001751 1.7e-11 72.4 40 82.5
Peaxi162Scf00047g00732 Petunia axillaris HOM05D001653 ORTHO05D001751 1.7e-11 72.4 40 82.5
SGA_v2.0_scaffold356G49800 Striga asiatica HOM05D001653 ORTHO05D001751 1.7e-11 72.4 40 82.5
THA.LOC104808721 Tarenaya hassleriana HOM05D001653 ORTHO05D001751 1.7e-11 72.4 40 80.0
Ciclev10004255m.g Citrus clementina HOM05D001653 ORTHO05D001751 2.2e-11 72.0 40 80.0
MELO3C020463.2 Cucumis melo HOM05D001653 ORTHO05D001751 2.2e-11 72.0 40 80.0
AL3G39080 Arabidopsis lyrata HOM05D001653 ORTHO05D001751 2.9e-11 71.6 40 80.0
AT3G24180 Arabidopsis thaliana HOM05D001653 ORTHO05D001751 2.9e-11 71.6 40 80.0
CARHR100020 Cardamine hirsuta HOM05D001653 ORTHO05D001751 2.9e-11 71.6 40 80.0
DCAR_024488 Daucus carota HOM05D001653 ORTHO05D001751 2.9e-11 71.6 40 82.5
Migut.N00368 Erythranthe guttata HOM05D001653 ORTHO05D001751 3.8e-11 71.2 40 80.0
Nitab4.5_0003750g0030 Nicotiana tabacum HOM05D001653 ORTHO05D001751 3.8e-11 71.2 40 80.0
Nitab4.5_0004974g0080 Nicotiana tabacum HOM05D001653 ORTHO05D001751 3.8e-11 71.2 40 80.0
Sed0018326 Sechium edule HOM05D001653 ORTHO05D001751 3.8e-11 71.2 40 80.0
Aa31LG8G10610 Aethionema arabicum HOM05D001653 ORTHO05D001751 4.9e-11 70.9 40 80.0
Carub.0003s2432 Capsella rubella HOM05D001653 ORTHO05D001751 4.9e-11 70.9 35 88.6
CAN.G500.18 Capsicum annuum HOM05D001653 ORTHO05D001751 4.9e-11 70.9 40 80.0
ECA233G1914 Erigeron canadensis HOM05D001653 ORTHO05D001751 4.9e-11 70.9 40 80.0
Lalb_Chr21g0312621 Lupinus albus HOM05D001653 ORTHO05D001751 4.9e-11 70.9 43 72.1
Cfa011813 Carpinus fangiana HOM05D001653 ORTHO05D001751 6.4e-11 70.5 40 77.5
CiPaw.01G123600 Carya illinoinensis HOM05D001653 ORTHO05D001751 6.4e-11 70.5 40 77.5
Haze_11592 Corylus avellana HOM05D001653 ORTHO05D001751 6.4e-11 70.5 40 77.5
CsaV3_2G011410 Cucumis sativus L. HOM05D001653 ORTHO05D001751 6.4e-11 70.5 40 77.5
Thhalv10020003m.g Eutrema salsugineum HOM05D001653 ORTHO05D001751 6.4e-11 70.5 40 77.5
Ca_09778_v3 Cicer arietinum L. HOM05D001653 ORTHO05D001751 8.4e-11 70.1 39 76.9
HanXRQChr07g0185671 Helianthus annuus HOM05D001653 ORTHO05D001751 8.4e-11 70.1 40 80.0
Lsat_1_v5_gn_6_59560 Lactuca sativa HOM05D001653 ORTHO05D001751 8.4e-11 70.1 40 80.0
Solyc09g091850.4 Solanum lycopersicum HOM05D001653 ORTHO05D001751 8.4e-11 70.1 40 77.5
Sopen09g034740 Solanum pennellii HOM05D001653 ORTHO05D001751 8.4e-11 70.1 40 77.5
Thecc.04G206800 Theobroma cacao HOM05D001653 ORTHO05D001751 8.4e-11 70.1 40 77.5
Lj6A562G37 Lonicera japonica HOM05D001653 ORTHO05D001751 1.1e-10 69.7 40 75.0
ATR0736G214 Amborella trichopoda HOM05D001653 ORTHO05D001751 1.4e-10 69.3 40 80.0
Dinv29582 Davidia involucrata HOM05D001653 ORTHO05D001751 1.4e-10 69.3 40 77.5
Dinv38253 Davidia involucrata HOM05D001653 ORTHO05D001751 1.4e-10 69.3 40 77.5
Duzib212G0715 Durio zibethinus HOM05D001653 ORTHO05D001751 1.4e-10 69.3 42 73.8
FvH4_4g00440 Fragaria vesca HOM05D001653 ORTHO05D001751 1.4e-10 69.3 40 77.5
FAN12G2988 Fragaria x ananassa HOM05D001653 ORTHO05D001751 1.4e-10 69.3 40 77.5
BcaB06g26514 Brassica carinata HOM05D001653 ORTHO05D001751 1.9e-10 68.9 40 75.0
BcaC06g35542 Brassica carinata HOM05D001653 ORTHO05D001751 1.9e-10 68.9 40 75.0
A07p08810 Brassica napus HOM05D001653 ORTHO05D001751 1.9e-10 68.9 40 75.0
C07p13670 Brassica napus HOM05D001653 ORTHO05D001751 1.9e-10 68.9 40 75.0
BolC7t41862H Brassica oleracea HOM05D001653 ORTHO05D001751 1.9e-10 68.9 40 75.0
BraA07t28672Z Brassica rapa HOM05D001653 ORTHO05D001751 1.9e-10 68.9 40 75.0
FAN17G1766 Fragaria x ananassa HOM05D001653 ORTHO05D001751 1.9e-10 68.9 40 75.0
FAN22G1060 Fragaria x ananassa HOM05D001653 ORTHO05D001751 1.9e-10 68.9 40 75.0
Psat6g141360 Pisum sativum HOM05D001653 ORTHO05D001751 1.9e-10 68.9 39 74.4
Potri.003G178000 Populus trichocarpa HOM05D001653 ORTHO05D001751 1.9e-10 68.9 40 77.5
PGR083G1395 Punica granatum HOM05D001653 ORTHO05D001751 1.9e-10 68.9 40 77.5
RcHm_v2.0_Chr4g0385861 Rosa chinensis HOM05D001653 ORTHO05D001751 1.9e-10 68.9 40 77.5
Sp3g21260 Schrenkiella parvula HOM05D001653 ORTHO05D001751 1.9e-10 68.9 40 75.0
EL10Ac2g02501 Beta vulgaris HOM05D001653 ORTHO05D001751 2.4e-10 68.6 40 75.0
Gohir.A10G122500 Gossypium hirsutum HOM05D001653 ORTHO05D001751 2.4e-10 68.6 40 77.5
Gohir.D10G143500 Gossypium hirsutum HOM05D001653 ORTHO05D001751 2.4e-10 68.6 40 77.5
Gorai.011G160300 Gossypium raimondii HOM05D001653 ORTHO05D001751 2.4e-10 68.6 40 77.5
Prupe.1G004700 Prunus persica HOM05D001653 ORTHO05D001751 2.4e-10 68.6 40 77.5
GSVIVG01029085001 Vitis vinifera HOM05D001653 ORTHO05D001751 2.4e-10 68.6 40 75.0
DCAR_030789 Daucus carota HOM05D001653 ORTHO05D001751 3.2e-10 68.2 40 72.5
Duzib151G0060 Durio zibethinus HOM05D001653 ORTHO05D001751 3.2e-10 68.2 40 75.0
Medtr1g072720 Medicago truncatula HOM05D001653 ORTHO05D001751 3.2e-10 68.2 39 74.4
PSO017G1217 Papaver somniferum HOM05D001653 ORTHO05D001751 3.2e-10 68.2 40 75.0
PSO063G1073 Papaver somniferum HOM05D001653 ORTHO05D001751 3.2e-10 68.2 40 75.0
TPR.G1596 Trifolium pratense HOM05D001653 ORTHO05D001751 3.2e-10 68.2 39 74.4
MBI10_g33979_MAGBIO Magnolia biondii HOM05D001653 ORTHO05D001751 4.1e-10 67.8 40 75.0
Hund22355 Selenicereus undatus HOM05D001653 ORTHO05D001751 4.1e-10 67.8 40 75.0
DCAR_026598 Daucus carota HOM05D001653 ORTHO05D001751 5.4e-10 67.4 40 75.0
Gohir.A09G203900 Gossypium hirsutum HOM05D001653 ORTHO05D001751 5.4e-10 67.4 40 72.5
QL06p023857 Quercus lobata HOM05D001653 ORTHO05D001751 5.4e-10 67.4 40 75.0
arahy.Tifrunner.gnm1.ann1.28JIBU Arachis hypogaea HOM05D001653 ORTHO05D001751 7.1e-10 67.0 43 67.4
arahy.Tifrunner.gnm1.ann1.MT85JA Arachis hypogaea HOM05D001653 ORTHO05D001751 7.1e-10 67.0 43 67.4
Phvul.007G134300 Phaseolus vulgaris HOM05D001653 ORTHO05D001751 7.1e-10 67.0 42 69.0
TAR362G1095 Trochodendron aralioides HOM05D001653 ORTHO05D001751 7.1e-10 67.0 40 75.0
Glyma.10G192400 Glycine max HOM05D001653 ORTHO05D001751 9.2e-10 66.6 42 69.0
Eucgr.H02851 Eucalyptus grandis HOM05D001653 ORTHO05D001751 1.2e-09 66.2 40 77.5
Glyma.20G198000 Glycine max HOM05D001653 ORTHO05D001751 1.2e-09 66.2 42 69.0
Lj5g0004348 Lotus japonicus HOM05D001653 ORTHO05D001751 1.2e-09 66.2 37 75.7
TWI09G1409 Tripterygium wilfordii HOM05D001653 ORTHO05D001751 1.2e-09 66.2 40 77.5
Eucgr.H00075 Eucalyptus grandis HOM05D001653 ORTHO05D001751 1.6e-09 65.9 42 73.8
Gohir.D09G197700 Gossypium hirsutum HOM05D001653 ORTHO05D001751 1.6e-09 65.9 40 70.0
Gorai.006G221200 Gossypium raimondii HOM05D001653 ORTHO05D001751 1.6e-09 65.9 40 70.0
Manes.15G051715 Manihot esculenta HOM05D001653 ORTHO05D001751 1.6e-09 65.9 38 76.3
Atru.chr4.1742 Acer truncatum HOM05D001653 ORTHO05D001751 2.1e-09 65.5 40 75.0
Manes.03G149301 Manihot esculenta HOM05D001653 ORTHO05D001751 2.1e-09 65.5 40 75.0
CSS0017520 Camellia sinensis var. sinensis HOM05D001653 ORTHO05D001751 2.7e-09 65.1 40 72.5
Lalb_Chr06g0169731 Lupinus albus HOM05D001653 ORTHO05D001751 2.7e-09 65.1 43 69.8
Os10g0473400 Oryza sativa ssp. japonica HOM05D001653 ORTHO05D001751 2.7e-09 65.1 37 75.7
VMungo0720G3080 Vigna mungo HOM05D001653 ORTHO05D001751 2.7e-09 65.1 42 66.7
Oeu001466.1 Olea europaea HOM05D001653 ORTHO05D001751 3.5e-09 64.7 37 78.4
TAR633G0328 Trochodendron aralioides HOM05D001653 ORTHO05D001751 3.5e-09 64.7 40 72.5
CSS0014444 Camellia sinensis var. sinensis HOM05D001653 ORTHO05D001751 6.0e-09 63.9 40 70.0
HPP92_022498 Vanilla planifolia HOM05D001653 ORTHO05D001751 7.8e-09 63.5 36 77.8
HPP92_022504 Vanilla planifolia HOM05D001653 ORTHO05D001751 7.8e-09 63.5 36 77.8
A01p31490 Brassica napus HOM05D001653 ORTHO05D001751 1.0e-08 63.2 40 70.0
C01p40130 Brassica napus HOM05D001653 ORTHO05D001751 1.0e-08 63.2 40 70.0
BolC1t03969H Brassica oleracea HOM05D001653 ORTHO05D001751 1.0e-08 63.2 40 70.0
BraA01t03275Z Brassica rapa HOM05D001653 ORTHO05D001751 1.0e-08 63.2 40 70.0
AUR62042620 Chenopodium quinoa HOM05D001653 ORTHO05D001751 1.3e-08 62.8 40 70.0
MD04G1004800 Malus domestica HOM05D001653 ORTHO05D001751 6.6e-08 60.5 40 67.5
COL.COLO4_20272 Corchorus olitorius HOM05D001653 ORTHO05D001751 8.7e-08 60.1 55 56.4
Zm00001eb096750 Zea mays HOM05D001653 ORTHO05D001751 2.5e-07 58.5 37 75.7
Sc25g0005850 Simmondsia chinensis HOM05D001653 ORTHO05D001751 2.8e-06 55.1 32 75.0


User provided reference genes

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