Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0019281 Helianthus annuus HOM05D001944 ORTHO05D002405 1.1e-179 633.3 323 100.0
HanXRQChr01g0019291 Helianthus annuus HOM05D001944 ORTHO05D002405 5.6e-80 302.0 513 40.4
HanXRQChr01g0019301 Helianthus annuus HOM05D001944 ORTHO05D002405 3.9e-49 199.5 390 39.5
Lsat_1_v5_gn_2_98901 Lactuca sativa HOM05D001944 ORTHO05D002405 1.8e-33 147.5 355 33.5
HanXRQChr14g0452741 Helianthus annuus HOM05D001944 ORTHO05D002405 5.1e-33 146.0 329 32.8
HanXRQChr01g0019271 Helianthus annuus HOM05D001944 ORTHO05D002405 3.1e-30 136.7 276 37.3
ECA238G1293 Erigeron canadensis HOM05D001944 ORTHO05D002405 9.0e-30 135.2 394 31.2
ECA248G2414 Erigeron canadensis HOM05D001944 ORTHO05D002405 5.3e-22 109.4 170 42.9
Lj2C1021G5 Lonicera japonica HOM05D001944 ORTHO05D002405 1.7e-20 104.4 86 55.8
ECA248G3660 Erigeron canadensis HOM05D001944 ORTHO05D002405 4.9e-20 102.8 289 31.8
Dinv01067 Davidia involucrata HOM05D001944 ORTHO05D002405 6.5e-20 102.4 86 54.7
Lj1A201T35 Lonicera japonica HOM05D001944 ORTHO05D011318 1.1e-19 101.7 77 63.6
Potri.004G212700 Populus trichocarpa HOM05D001944 ORTHO05D002405 1.1e-19 101.7 88 53.4
CSS0012038 Camellia sinensis var. sinensis HOM05D001944 ORTHO05D002405 1.4e-19 101.3 89 51.7
Dinv32718 Davidia involucrata HOM05D001944 ORTHO05D002405 4.2e-19 99.8 85 54.1
vmacro03215 Vaccinium macrocarpon HOM05D001944 ORTHO05D002405 5.5e-19 99.4 169 38.5
TWI79G1706 Tripterygium wilfordii HOM05D001944 ORTHO05D002405 7.1e-19 99.0 126 38.9
Actinidia20443 Actinidia chinensis HOM05D001944 ORTHO05D014293 2.1e-18 97.4 107 45.8
Lsat_1_v5_gn_0_24581 Lactuca sativa HOM05D001944 ORTHO05D002405 2.1e-18 97.4 81 60.5
Rhsim01G0215200 Rhododendron simsii HOM05D001944 ORTHO05D014293 2.7e-18 97.1 100 46.0
Potri.013G006000 Populus trichocarpa HOM05D001944 ORTHO05D002405 6.0e-18 95.9 110 42.7
Gorai.009G108800 Gossypium raimondii HOM05D001944 ORTHO05D002405 1.8e-17 94.4 86 52.3
Peaxi162Scf00948g00114 Petunia axillaris HOM05D001944 ORTHO05D002405 1.8e-17 94.4 103 41.7
TAR623G0602 Trochodendron aralioides HOM05D001944 ORTHO05D002405 1.8e-17 94.4 169 36.7
Actinidia07154 Actinidia chinensis HOM05D001944 ORTHO05D002405 2.3e-17 94.0 112 43.8
Peaxi162Scf00167g00092 Petunia axillaris HOM05D001944 ORTHO05D002405 2.3e-17 94.0 89 46.1
Duzib168G0647 Durio zibethinus HOM05D001944 ORTHO05D002405 3.0e-17 93.6 86 52.3
GSVIVG01025215001 Vitis vinifera HOM05D001944 ORTHO05D002405 3.0e-17 93.6 83 56.6
Atru.chr8.1406 Acer truncatum HOM05D001944 ORTHO05D002405 3.9e-17 93.2 89 46.1
Gohir.A05G105000 Gossypium hirsutum HOM05D001944 ORTHO05D002405 6.7e-17 92.4 86 51.2
Gohir.D05G104800 Gossypium hirsutum HOM05D001944 ORTHO05D002405 6.7e-17 92.4 86 51.2
TAR636G3431 Trochodendron aralioides HOM05D001944 ORTHO05D002405 8.7e-17 92.0 282 29.8
Rhsim13G0096400 Rhododendron simsii HOM05D001944 ORTHO05D002405 1.5e-16 91.3 111 45.0
Hma1.2p1_0058F.1_g032350 Hydrangea macrophylla HOM05D001944 ORTHO05D011318 1.9e-16 90.9 92 46.7
TAR369G0775 Trochodendron aralioides HOM05D001944 ORTHO05D002405 1.9e-16 90.9 108 43.5
Aqoxy1G01204 Aquilegia oxysepala HOM05D001944 ORTHO05D002405 2.5e-16 90.5 110 45.5
Lsat_1_v5_gn_1_63980 Lactuca sativa HOM05D001944 ORTHO05D002405 2.5e-16 90.5 147 40.8
MD03G1121600 Malus domestica HOM05D001944 ORTHO05D002405 2.5e-16 90.5 154 34.4
Potri.005G010133 Populus trichocarpa HOM05D001944 ORTHO05D002405 3.3e-16 90.1 86 47.7
TWI31G0996 Tripterygium wilfordii HOM05D001944 ORTHO05D002405 5.7e-16 89.4 110 42.7
Cc01_g10870 Coffea canephora HOM05D001944 ORTHO05D002405 7.4e-16 89.0 86 51.2
FAN21G2742 Fragaria x ananassa HOM05D001944 ORTHO05D002405 9.7e-16 88.6 81 48.1
Sopen06g005090 Solanum pennellii HOM05D001944 ORTHO05D002405 9.7e-16 88.6 80 56.2
Nitab4.5_0006619g0020 Nicotiana tabacum HOM05D001944 ORTHO05D002405 1.3e-15 88.2 83 54.2
Solyc06g010240.3 Solanum lycopersicum HOM05D001944 ORTHO05D002405 1.3e-15 88.2 89 44.9
Manes.03G122401 Manihot esculenta HOM05D001944 ORTHO05D002405 1.6e-15 87.8 86 47.7
Prupe.6G104600 Prunus persica HOM05D001944 ORTHO05D002405 2.2e-15 87.4 107 40.2
TAR633G2605 Trochodendron aralioides HOM05D001944 ORTHO05D002405 2.2e-15 87.4 113 38.1
CAN.G171.6 Capsicum annuum HOM05D001944 ORTHO05D002405 2.8e-15 87.0 89 43.8
FAN16G2569 Fragaria x ananassa HOM05D001944 ORTHO05D002405 2.8e-15 87.0 81 46.9
Haze_23780 Corylus avellana HOM05D001944 ORTHO05D002405 3.7e-15 86.7 86 47.7
PGR102G2473 Punica granatum HOM05D001944 ORTHO05D002405 3.7e-15 86.7 89 44.9
Oeu056301.1 Olea europaea HOM05D001944 ORTHO05D002405 6.3e-15 85.9 83 45.8
FvH4_3g31740 Fragaria vesca HOM05D001944 ORTHO05D002405 8.2e-15 85.5 81 45.7
FAN11G3960 Fragaria x ananassa HOM05D001944 ORTHO05D002405 8.2e-15 85.5 81 45.7
Thecc.09G343900 Theobroma cacao HOM05D001944 ORTHO05D002405 8.2e-15 85.5 85 49.4
CiPaw.14G085200 Carya illinoinensis HOM05D001944 ORTHO05D002405 1.1e-14 85.1 111 38.7
Nitab4.5_0000181g0180 Nicotiana tabacum HOM05D001944 ORTHO05D002405 1.1e-14 85.1 115 44.3
SGA_v2.0_scaffold116G32253 Striga asiatica HOM05D001944 ORTHO05D002405 1.1e-14 85.1 88 51.1
Ciclev10027663m.g Citrus clementina HOM05D001944 ORTHO05D002405 1.4e-14 84.7 112 41.1
Oeu013469.1 Olea europaea HOM05D001944 ORTHO05D002405 1.4e-14 84.7 86 44.2
PSO063G0478 Papaver somniferum HOM05D001944 ORTHO05D002405 1.4e-14 84.7 107 40.2
PSO339G1466 Papaver somniferum HOM05D001944 ORTHO05D002405 1.4e-14 84.7 107 40.2
RcHm_v2.0_Chr5g0058411 Rosa chinensis HOM05D001944 ORTHO05D002405 1.4e-14 84.7 81 46.9
Sc21g0003900 Simmondsia chinensis HOM05D001944 ORTHO05D002405 1.4e-14 84.7 86 46.5
Cfa011296 Carpinus fangiana HOM05D001944 ORTHO05D002405 1.8e-14 84.3 86 47.7
MD11G1139900 Malus domestica HOM05D001944 ORTHO05D002405 2.4e-14 84.0 107 39.3
Nn2g11517 Nelumbo nucifera HOM05D001944 ORTHO05D002405 2.4e-14 84.0 86 47.7
MSTRG.17786 Avicennia marina HOM05D001944 ORTHO05D002405 4.1e-14 83.2 171 39.8
Eucgr.B02518 Eucalyptus grandis HOM05D001944 ORTHO05D002405 4.1e-14 83.2 120 37.5
FAN25G3826 Fragaria x ananassa HOM05D001944 ORTHO05D002405 5.3e-14 82.8 81 45.7
Nitab4.5_0000602g0020 Nicotiana tabacum HOM05D001944 ORTHO05D002405 5.3e-14 82.8 89 43.8
Oeu056302.1 Olea europaea HOM05D001944 ORTHO05D002405 5.3e-14 82.8 150 39.3
Aqoxy7G00183 Aquilegia oxysepala HOM05D001944 ORTHO05D002405 6.9e-14 82.4 85 43.5
Nitab4.5_0006532g0030 Nicotiana tabacum HOM05D001944 ORTHO05D002405 1.5e-13 81.3 89 43.8
QL93p2013_0009 Quercus lobata HOM05D001944 ORTHO05D002405 2.0e-13 80.9 89 42.7
Dinv32719 Davidia involucrata HOM05D001944 ORTHO05D002405 2.6e-13 80.5 83 50.6
Lsat_1_v5_gn_5_80480 Lactuca sativa HOM05D004045 ORTHO05D002405 3.4e-13 80.1 111 44.1
Hma1.2p1_0307F.1_g119910 Hydrangea macrophylla HOM05D001944 ORTHO05D002405 4.5e-13 79.7 216 32.9
Solyc11g069610.3 Solanum lycopersicum HOM05D001944 ORTHO05D002405 7.7e-13 79.0 86 41.9
Sopen11g028320 Solanum pennellii HOM05D001944 ORTHO05D002405 7.7e-13 79.0 86 41.9
ATR0048G049 Amborella trichopoda HOM05D001944 ORTHO05D002405 1.0e-12 78.6 188 29.8
Ca_01379_v3 Cicer arietinum L. HOM05D001944 ORTHO05D002405 1.0e-12 78.6 92 42.4
Ca_01395_v3 Cicer arietinum L. HOM05D001944 ORTHO05D002405 1.0e-12 78.6 92 42.4
THA.LOC104800593 Tarenaya hassleriana HOM05D001944 ORTHO05D002405 1.0e-12 78.6 78 46.2
Zm00001eb379660 Zea mays HOM05D001944 ORTHO05D002405 1.0e-12 78.6 85 42.4
Nn2g13727 Nelumbo nucifera HOM05D001944 ORTHO05D002405 1.3e-12 78.2 83 47.0
QL01p026770 Quercus lobata HOM05D001944 ORTHO05D002405 1.3e-12 78.2 95 45.3
MD11G1140000 Malus domestica HOM05D001944 ORTHO05D002405 1.7e-12 77.8 112 34.8
Gohir.A08G199401 Gossypium hirsutum HOM05D001944 ORTHO05D002405 2.2e-12 77.4 86 44.2
Gohir.D08G216700 Gossypium hirsutum HOM05D001944 ORTHO05D002405 2.2e-12 77.4 86 44.2
Gorai.004G230500 Gossypium raimondii HOM05D001944 ORTHO05D002405 2.2e-12 77.4 86 44.2
Lalb_Chr25g0289071 Lupinus albus HOM05D001944 ORTHO05D002405 2.2e-12 77.4 84 42.9
Medtr7g101465 Medicago truncatula HOM05D001944 ORTHO05D002405 2.2e-12 77.4 77 48.1
Actinidia20444 Actinidia chinensis HOM05D001944 ORTHO05D002405 2.9e-12 77.0 120 39.2
CSS0007832 Camellia sinensis var. sinensis HOM05D001944 ORTHO05D002405 2.9e-12 77.0 75 52.0
COL.COLO4_18305 Corchorus olitorius HOM05D001944 ORTHO05D002405 2.9e-12 77.0 77 50.6
SGA_v2.0_scaffold127G34027 Striga asiatica HOM05D001944 ORTHO05D002405 2.9e-12 77.0 77 49.4
MSTRG.12332 Avicennia marina HOM05D001944 ORTHO05D002405 3.8e-12 76.6 86 37.2
arahy.Tifrunner.gnm1.ann1.H0XM2A Arachis hypogaea HOM05D001944 ORTHO05D011318 5.0e-12 76.3 165 27.3
CAN.G631.45 Capsicum annuum HOM05D000550 ORTHO05D009781 5.0e-12 76.3 198 27.8
Psat5g279720 Pisum sativum HOM05D001944 ORTHO05D002405 5.0e-12 76.3 87 42.5
Sabra05G0007500 Salix brachista HOM05D001944 ORTHO05D002405 5.0e-12 76.3 81 48.1
TPR.G9371 Trifolium pratense HOM05D001944 ORTHO05D002405 5.0e-12 76.3 81 44.4
HPP92_003460 Vanilla planifolia HOM05D001944 ORTHO05D002405 5.0e-12 76.3 85 41.2
GSVIVG01025216001 Vitis vinifera HOM05D001944 ORTHO05D002405 6.5e-12 75.9 70 52.9
arahy.Tifrunner.gnm1.ann1.ST0ZZW Arachis hypogaea HOM05D001944 ORTHO05D011318 1.1e-11 75.1 165 26.7
EL10Ac9g22555 Beta vulgaris HOM05D001944 ORTHO05D002405 1.1e-11 75.1 73 49.3
AUR62029226 Chenopodium quinoa HOM05D001944 ORTHO05D002405 1.1e-11 75.1 86 34.9
CANSAT54G1673 Cannabis sativa HOM05D001944 ORTHO05D002405 1.9e-11 74.3 76 43.4
Prupe.6G104700 Prunus persica HOM05D001944 ORTHO05D002405 1.9e-11 74.3 87 40.2
Lalb_Chr01g0004401 Lupinus albus HOM05D001944 ORTHO05D011318 2.5e-11 73.9 90 38.9
Lalb_Chr19g0137131 Lupinus albus HOM05D001944 ORTHO05D011318 2.5e-11 73.9 88 38.6
Psat3g043480 Pisum sativum HOM05D001944 ORTHO05D002405 2.5e-11 73.9 79 43.0
Actinidia03719 Actinidia chinensis HOM05D001944 ORTHO05D002405 3.2e-11 73.6 93 45.2
AUR62022774 Chenopodium quinoa HOM05D001944 ORTHO05D002405 3.2e-11 73.6 86 33.7
Lj1A201T36 Lonicera japonica HOM05D001944 ORTHO05D002405 3.2e-11 73.6 74 47.3
Aa31LG9G1980 Aethionema arabicum HOM05D001944 ORTHO05D002405 4.2e-11 73.2 86 39.5
Cpa.g.sc311.2 Carica papaya HOM05D001944 ORTHO05D002405 4.2e-11 73.2 83 51.8
THA.LOC104826377 Tarenaya hassleriana HOM05D001944 ORTHO05D002405 4.2e-11 73.2 86 37.2
Sp1g06700 Schrenkiella parvula HOM05D001944 ORTHO05D002405 5.5e-11 72.8 88 40.9
FvH4_4g08540 Fragaria vesca HOM05D001944 ORTHO05D020674 7.2e-11 72.4 78 44.9
AUR62029227 Chenopodium quinoa HOM05D001944 ORTHO05D002405 9.4e-11 72.0 86 34.9
ClCG03G002980 Citrullus lanatus HOM05D001944 ORTHO05D002405 9.4e-11 72.0 91 39.6
MELO3C004905.2 Cucumis melo HOM05D001944 ORTHO05D002405 9.4e-11 72.0 91 39.6
Os06g0102800 Oryza sativa ssp. japonica HOM05D001944 ORTHO05D002405 9.4e-11 72.0 85 40.0
arahy.Tifrunner.gnm1.ann1.BHY38Y Arachis hypogaea HOM05D001944 ORTHO05D002405 1.2e-10 71.6 85 41.2
arahy.Tifrunner.gnm1.ann1.Q55GHJ Arachis hypogaea HOM05D001944 ORTHO05D002405 1.2e-10 71.6 85 41.2
Medtr4g058650 Medicago truncatula HOM05D001944 ORTHO05D011318 1.6e-10 71.2 86 37.2
RcHm_v2.0_Chr4g0405411 Rosa chinensis HOM05D001944 ORTHO05D020674 1.6e-10 71.2 154 32.5
TPR.G6160 Trifolium pratense HOM05D001944 ORTHO05D011318 1.6e-10 71.2 86 37.2
vmacro14422 Vaccinium macrocarpon HOM05D001944 ORTHO05D002405 2.1e-10 70.9 79 50.6
VMungo1383G2762 Vigna mungo HOM05D001944 ORTHO05D002405 2.1e-10 70.9 184 27.2
FAN07G1966 Fragaria x ananassa HOM05D001944 ORTHO05D020674 2.7e-10 70.5 78 44.9
Migut.N02586 Erythranthe guttata HOM05D001944 ORTHO05D002405 3.6e-10 70.1 73 46.6
CsaV3_1G013920 Cucumis sativus L. HOM05D001944 ORTHO05D002405 4.6e-10 69.7 91 38.5
BcaC05g24721 Brassica carinata HOM05D001944 ORTHO05D002405 6.1e-10 69.3 84 41.7
A06p05120 Brassica napus HOM05D001944 ORTHO05D002405 6.1e-10 69.3 84 41.7
BolC5t29368H Brassica oleracea HOM05D001944 ORTHO05D002405 6.1e-10 69.3 84 41.7
BraA06t23719Z Brassica rapa HOM05D001944 ORTHO05D002405 6.1e-10 69.3 84 41.7
Lj3g0013525 Lotus japonicus HOM05D001944 ORTHO05D002405 7.9e-10 68.9 86 37.2
Hund01491 Selenicereus undatus HOM05D001944 ORTHO05D002405 7.9e-10 68.9 110 42.7
Ah.01g003060 Amaranthus hybridus HOM05D001944 ORTHO05D002405 1.0e-09 68.6 118 37.3
Migut.D02244 Erythranthe guttata HOM05D001944 ORTHO05D002405 1.0e-09 68.6 104 41.3
HPP92_003457 Vanilla planifolia HOM05D001944 ORTHO05D011318 1.0e-09 68.6 77 41.6
C05p06080 Brassica napus HOM05D001944 ORTHO05D002405 1.4e-09 68.2 84 41.7
C08p50200 Brassica napus HOM05D001944 ORTHO05D002405 1.4e-09 68.2 97 35.1
FAN12G2222 Fragaria x ananassa HOM05D001944 ORTHO05D020674 1.4e-09 68.2 78 43.6
Glyma.12G077400 Glycine max HOM05D001944 ORTHO05D011318 1.4e-09 68.2 102 32.4
Medtr2g094980 Medicago truncatula HOM05D001944 ORTHO05D011318 1.4e-09 68.2 96 33.3
BolC8t52549H Brassica oleracea HOM05D001944 ORTHO05D002405 1.8e-09 67.8 97 34.0
Thhalv10006530m.g Eutrema salsugineum HOM05D001944 ORTHO05D002405 1.8e-09 67.8 86 38.4
Lj1g0027821 Lotus japonicus HOM05D001944 ORTHO05D002405 1.8e-09 67.8 83 38.6
TPR.G11481 Trifolium pratense HOM05D001944 ORTHO05D002405 1.8e-09 67.8 87 36.8
Glyma.11G196900 Glycine max HOM05D001944 ORTHO05D011318 2.3e-09 67.4 102 33.3
BcaB02g06690 Brassica carinata HOM05D000550 ORTHO05D002405 3.0e-09 67.0 84 41.7
Sed0024562 Sechium edule HOM05D001944 ORTHO05D002405 3.0e-09 67.0 128 32.8
A09p66040 Brassica napus HOM05D001944 ORTHO05D002405 5.1e-09 66.2 86 37.2
BraA09t41943Z Brassica rapa HOM05D001944 ORTHO05D002405 5.1e-09 66.2 86 37.2
Glyma.03G181800 Glycine max HOM05D001944 ORTHO05D002405 5.1e-09 66.2 80 41.2
Phvul.005G133500 Phaseolus vulgaris HOM05D001944 ORTHO05D002405 5.1e-09 66.2 84 42.9
Thecc.05G062600 Theobroma cacao HOM05D001944 ORTHO05D002405 6.7e-09 65.9 159 28.9
VMungo1080G1631 Vigna mungo HOM05D001944 ORTHO05D002405 6.7e-09 65.9 102 34.3
Lalb_Chr24g0394751 Lupinus albus HOM05D001944 ORTHO05D002405 1.1e-08 65.1 222 30.2
Lj3g0022042 Lotus japonicus HOM05D001944 ORTHO05D011318 1.5e-08 64.7 115 31.3
Glyma.12G175400 Glycine max HOM05D001944 ORTHO05D002405 4.3e-08 63.2 85 43.5
Glyma.13G324500 Glycine max HOM05D001944 ORTHO05D002405 4.3e-08 63.2 85 42.4
BcaC07g42507 Brassica carinata HOM05D001944 ORTHO05D002405 5.7e-08 62.8 71 40.8
Psat7g192240 Pisum sativum HOM05D001944 ORTHO05D011318 5.7e-08 62.8 86 34.9
Zm00001eb229660 Zea mays HOM05D013792 ORTHO05D011318 7.4e-08 62.4 85 37.6
Carub.0001s0741 Capsella rubella HOM05D001944 ORTHO05D002405 1.3e-07 61.6 86 34.9
Medtr2g095030 Medicago truncatula HOM05D001944 ORTHO05D002405 1.3e-07 61.6 85 41.2
CARHR007860 Cardamine hirsuta HOM05D001944 ORTHO05D002405 1.7e-07 61.2 79 38.0
AL1G18410 Arabidopsis lyrata HOM05D001944 ORTHO05D002405 3.7e-07 60.1 79 35.4
Phvul.011G081700 Phaseolus vulgaris HOM05D001944 ORTHO05D011318 3.7e-07 60.1 87 32.2
SHI21823 Sapria himalayana HOM05D001944 ORTHO05D002405 3.7e-07 60.1 69 52.2
Nitab4.5_0006619g0010 Nicotiana tabacum HOM05D001944 ORTHO05D002405 4.8e-07 59.7 65 41.5
MSTRG.18675 Avicennia marina HOM05D001944 ORTHO05D002405 6.3e-07 59.3 78 39.7
Duzib128G0909 Durio zibethinus HOM05D001944 ORTHO05D002405 6.3e-07 59.3 252 26.2
DCAR_022760 Daucus carota HOM05D001944 ORTHO05D002405 8.2e-07 58.9 166 33.1
TPR.G9836 Trifolium pratense HOM05D001944 ORTHO05D011318 8.2e-07 58.9 86 31.4
VMungo1127G1376 Vigna mungo HOM05D001944 ORTHO05D011318 1.4e-06 58.2 85 34.1
AT1G08060 Arabidopsis thaliana HOM05D001944 ORTHO05D002405 1.8e-06 57.8 81 34.6
QL07p044103 Quercus lobata HOM05D001944 ORTHO05D002405 1.8e-06 57.8 53 43.4
Sed0004333 Sechium edule HOM05D001944 ORTHO05D002405 2.4e-06 57.4 78 43.6


User provided reference genes

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