Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0018481 Helianthus annuus HOM05D006927 ORTHO05D009065 4.5e-178 627.9 330 100.0
Lsat_1_v5_gn_1_89341 Lactuca sativa HOM05D006927 ORTHO05D009065 4.0e-150 535.0 299 86.6
ECA248G1152 Erigeron canadensis HOM05D006927 ORTHO05D009065 1.1e-147 526.9 294 85.4
FAN03G0521 Fragaria x ananassa HOM05D006927 ORTHO05D009065 3.6e-127 458.8 295 73.2
RcHm_v2.0_Chr1g0340711 Rosa chinensis HOM05D006927 ORTHO05D009065 6.2e-127 458.0 296 73.6
DCAR_001906 Daucus carota HOM05D006927 ORTHO05D009065 4.0e-126 455.3 296 74.0
Duzib177G0162 Durio zibethinus HOM05D006927 ORTHO05D009065 4.0e-126 455.3 332 68.1
FvH4_7g08340 Fragaria vesca HOM05D006927 ORTHO05D009065 4.0e-126 455.3 295 73.2
Dinv43961 Davidia involucrata HOM05D006927 ORTHO05D009065 1.5e-125 453.4 299 72.9
Potri.013G070700 Populus trichocarpa HOM05D006927 ORTHO05D009065 2.6e-125 452.6 295 73.2
Prupe.2G106800 Prunus persica HOM05D006927 ORTHO05D009065 4.4e-125 451.8 298 72.1
Manes.09G133500 Manihot esculenta HOM05D006927 ORTHO05D009065 3.8e-124 448.7 303 71.9
Gorai.007G250200 Gossypium raimondii HOM05D006927 ORTHO05D009065 4.9e-124 448.4 296 72.3
FAN10G1940 Fragaria x ananassa HOM05D006927 ORTHO05D009065 6.4e-124 448.0 303 70.3
GSVIVG01019324001 Vitis vinifera HOM05D006927 ORTHO05D009065 1.1e-123 447.2 292 72.3
Eucgr.D01080 Eucalyptus grandis HOM05D006927 ORTHO05D009065 4.2e-123 445.3 285 73.7
Gohir.A11G224222 Gossypium hirsutum HOM05D006927 ORTHO05D009065 4.2e-123 445.3 299 71.6
CSS0044270 Camellia sinensis var. sinensis HOM05D006927 ORTHO05D009065 9.2e-123 444.1 291 72.9
Cc02_g26470 Coffea canephora HOM05D006927 ORTHO05D009065 1.2e-122 443.7 294 71.4
CSS0031880 Camellia sinensis var. sinensis HOM05D006927 ORTHO05D009065 2.1e-122 443.0 291 72.5
FAN06G3009 Fragaria x ananassa HOM05D006927 ORTHO05D009065 2.7e-122 442.6 313 68.7
Thecc.05G234500 Theobroma cacao HOM05D006927 ORTHO05D009065 2.7e-122 442.6 296 72.0
Lj9A617T58 Lonicera japonica HOM05D006927 ORTHO05D009065 4.6e-122 441.8 276 75.7
Rhsim07G0047700 Rhododendron simsii HOM05D006927 ORTHO05D009065 1.0e-121 440.7 317 69.4
SalBow5G1207 Salvia bowleyana HOM05D006927 ORTHO05D009065 2.3e-121 439.5 331 65.3
Cpa.g.sc73.27 Carica papaya HOM05D006927 ORTHO05D009065 3.0e-121 439.1 296 72.3
MD07G1081500 Malus domestica HOM05D006927 ORTHO05D009065 5.1e-121 438.3 278 75.9
QL04p053394 Quercus lobata HOM05D006927 ORTHO05D009065 1.5e-120 436.8 296 70.6
PGSC0003DMG400031110 Solanum tuberosum HOM05D006927 ORTHO05D009065 1.5e-120 436.8 299 70.6
Solyc01g081480.3 Solanum lycopersicum HOM05D006927 ORTHO05D009065 3.3e-120 435.6 298 70.1
CsaV3_6G006390 Cucumis sativus L. HOM05D006927 ORTHO05D009065 7.3e-120 434.5 335 65.1
Sopen01g033040 Solanum pennellii HOM05D006927 ORTHO05D009065 2.1e-119 433.0 298 69.8
MELO3C022480.2 Cucumis melo HOM05D006927 ORTHO05D009065 1.1e-118 430.6 335 64.2
CAN.G992.25 Capsicum annuum HOM05D006927 ORTHO05D009065 2.4e-118 429.5 293 70.0
TWI34G1327 Tripterygium wilfordii HOM05D006927 ORTHO05D009065 2.4e-118 429.5 294 69.4
BcaC03g13532 Brassica carinata HOM05D006927 ORTHO05D009065 3.1e-118 429.1 299 69.6
Carub.0006s1591 Capsella rubella HOM05D006927 ORTHO05D009065 3.1e-118 429.1 300 68.7
AL6G28760 Arabidopsis lyrata HOM05D006927 ORTHO05D009065 4.0e-118 428.7 298 69.5
Nitab4.5_0000792g0130 Nicotiana tabacum HOM05D006927 ORTHO05D009065 9.0e-118 427.6 297 69.7
Nitab4.5_0006785g0060 Nicotiana tabacum HOM05D006927 ORTHO05D009065 1.2e-117 427.2 300 68.7
AT5G17670 Arabidopsis thaliana HOM05D006927 ORTHO05D009065 2.6e-117 426.0 298 68.8
Aqoxy1G00986 Aquilegia oxysepala HOM05D006927 ORTHO05D009065 4.4e-117 425.2 310 64.8
PGR083G0610 Punica granatum HOM05D006927 ORTHO05D009065 5.8e-117 424.9 290 70.0
Ciclev10032190m.g Citrus clementina HOM05D006927 ORTHO05D009065 7.6e-117 424.5 300 68.0
Sp6g26550 Schrenkiella parvula HOM05D006927 ORTHO05D009065 7.6e-117 424.5 300 67.3
Migut.B01420 Erythranthe guttata HOM05D006927 ORTHO05D009065 1.3e-116 423.7 298 68.8
THA.LOC104820815 Tarenaya hassleriana HOM05D006927 ORTHO05D009065 4.9e-116 421.8 303 68.6
Peaxi162Scf00907g00025 Petunia axillaris HOM05D006927 ORTHO05D009065 6.4e-116 421.4 292 69.9
C02p09230 Brassica napus HOM05D006927 ORTHO05D009065 8.4e-116 421.0 303 68.0
Haze_15787 Corylus avellana HOM05D006927 ORTHO05D009065 8.4e-116 421.0 297 69.4
Phvul.002G317100 Phaseolus vulgaris HOM05D006927 ORTHO05D009065 1.1e-115 420.6 297 69.4
Medtr3g118320 Medicago truncatula HOM05D006927 ORTHO05D009065 1.4e-115 420.2 296 68.9
Sed0018978 Sechium edule HOM05D006927 ORTHO05D009065 2.4e-115 419.5 296 68.2
TAR629G3441 Trochodendron aralioides HOM05D006927 ORTHO05D009065 4.2e-115 418.7 279 69.9
A02p04400 Brassica napus HOM05D006927 ORTHO05D009065 7.1e-115 417.9 303 68.3
Glyma.06G001500 Glycine max HOM05D006927 ORTHO05D009065 7.1e-115 417.9 302 70.2
Thhalv10014137m.g Eutrema salsugineum HOM05D006927 ORTHO05D009065 1.6e-114 416.8 304 67.4
Lj1g0006598 Lotus japonicus HOM05D006927 ORTHO05D009065 2.1e-114 416.4 290 70.0
VMungo0251G3349 Vigna mungo HOM05D006927 ORTHO05D009065 2.1e-114 416.4 294 70.7
arahy.Tifrunner.gnm1.ann1.DTN3WJ Arachis hypogaea HOM05D006927 ORTHO05D009065 4.6e-114 415.2 296 67.2
Sc11g0005590 Simmondsia chinensis HOM05D006927 ORTHO05D009065 7.8e-114 414.5 301 65.8
Atru.chr2.1634 Acer truncatum HOM05D006927 ORTHO05D009065 1.7e-113 413.3 325 63.4
arahy.Tifrunner.gnm1.ann1.A7PVHI Arachis hypogaea HOM05D006927 ORTHO05D009065 5.1e-113 411.8 300 67.0
vmacro13598 Vaccinium macrocarpon HOM05D006927 ORTHO05D009065 2.5e-112 409.5 402 53.5
PSO675G5316 Papaver somniferum HOM05D006927 ORTHO05D009065 5.6e-112 408.3 315 62.9
ATR0568G108 Amborella trichopoda HOM05D006927 ORTHO05D009065 2.1e-111 406.4 294 66.0
Os02g0129900 Oryza sativa ssp. japonica HOM05D006927 ORTHO05D009065 5.3e-110 401.7 285 69.1
TPR.G38566 Trifolium pratense HOM05D006927 ORTHO05D009065 6.9e-110 401.4 299 66.6
MBI04_g06278_MAGBIO Magnolia biondii HOM05D006927 ORTHO05D009065 2.0e-109 399.8 279 67.7
Aa31LG11G11960 Aethionema arabicum HOM05D006927 ORTHO05D009065 3.4e-109 399.1 329 60.8
ClCG06G000620 Citrullus lanatus HOM05D006927 ORTHO05D009065 7.6e-109 397.9 330 62.4
Zm00001eb208940 Zea mays HOM05D006927 ORTHO05D009065 3.8e-108 395.6 290 67.9
Ah.16g104050 Amaranthus hybridus HOM05D006927 ORTHO05D009065 8.4e-108 394.4 298 65.1
CANSAT25G2771 Cannabis sativa HOM05D006927 ORTHO05D009065 1.4e-107 393.7 285 64.6
COL.COLO4_21417 Corchorus olitorius HOM05D006927 ORTHO05D009065 7.9e-106 387.9 274 69.3
SGA_v2.0_scaffold98G29375 Striga asiatica HOM05D006927 ORTHO05D009065 1.9e-104 383.3 289 67.1
Ca_15418_v3 Cicer arietinum L. HOM05D006927 ORTHO05D009065 3.3e-104 382.5 282 67.4
FAN01G0804 Fragaria x ananassa HOM05D006927 ORTHO05D009065 2.2e-100 369.8 289 64.7
Lalb_Chr08g0246751 Lupinus albus HOM05D006927 ORTHO05D009065 1.4e-99 367.1 298 59.7
Sabra13G0061600 Salix brachista HOM05D006927 ORTHO05D009065 7.4e-96 354.8 340 55.3
Pp3c20_10810 Physcomitrium patens HOM05D006927 ORTHO05D009065 8.2e-95 351.3 303 56.8
CDE02G0279 Ceratophyllum demersum HOM05D006927 ORTHO05D009065 5.8e-93 345.1 295 55.9
AagrBONN_evm.TU.Sc2ySwM_228.4179 Anthoceros agrestis HOM05D006927 ORTHO05D009065 2.9e-92 342.8 311 55.3
Mapoly0110s0034 Marchantia polymorpha HOM05D006927 ORTHO05D009065 3.2e-91 339.3 289 58.1
MD02G1231900 Malus domestica HOM05D006927 ORTHO05D009065 1.6e-90 337.0 251 67.3
Psat5g000960 Pisum sativum HOM05D006927 ORTHO05D009065 1.0e-81 307.8 236 66.5
SMO141G0137 Selaginella moellendorffii HOM05D006927 ORTHO05D009065 3.3e-80 302.8 275 53.5
Oeu034881.1 Olea europaea HOM05D006927 ORTHO05D009065 3.2e-75 286.2 180 75.0
Dinv43521 Davidia involucrata HOM05D006927 ORTHO05D009065 4.7e-74 282.3 184 74.5
Nn1g09344 Nelumbo nucifera HOM05D006927 ORTHO05D009065 1.7e-71 273.9 178 71.9
BolC2t06832H Brassica oleracea HOM05D006927 ORTHO05D009065 2.8e-71 273.1 181 74.6
BraA02t05404Z Brassica rapa HOM05D006927 ORTHO05D009065 7.0e-70 268.5 178 74.2
Actinidia31733 Actinidia chinensis HOM05D006927 ORTHO05D009065 2.6e-69 266.5 180 70.0
MCO09G674 Micromonas commoda HOM05D006927 ORTHO05D009065 1.2e-66 257.7 279 45.5
CiPaw.02G047300 Carya illinoinensis HOM05D006927 ORTHO05D009065 1.8e-65 253.8 169 71.6
Cre07.g313550 Chlamydomonas reinhardtii HOM05D006927 ORTHO05D009065 2.0e-64 250.4 296 44.3
Aqoxy116s007 Aquilegia oxysepala HOM05D006927 ORTHO05D009065 5.7e-64 248.8 273 50.5
HPP92_025548 Vanilla planifolia HOM05D006927 ORTHO05D009065 2.0e-61 240.4 181 62.4
PRCOL_00002784 Prasinoderma coloniale HOM05D006927 ORTHO05D009065 1.3e-60 237.7 291 44.7
CARHR195510 Cardamine hirsuta HOM05D006927 ORTHO05D009065 1.8e-57 227.3 164 67.1
Gohir.D11G237100 Gossypium hirsutum HOM05D006927 ORTHO05D009065 1.6e-53 214.2 132 78.8
unitig_26.g8847 Utricularia gibba HOM05D006927 ORTHO05D009065 3.7e-47 193.0 138 67.4
unitig_26.g8846 Utricularia gibba HOM05D006927 ORTHO05D009065 1.2e-34 151.4 100 67.0
MCO02G275 Micromonas commoda HOM05D006927 ORTHO05D044296 1.4e-30 137.9 322 32.9
Actinidia34774 Actinidia chinensis HOM05D006927 ORTHO05D009065 3.2e-30 136.7 81 75.3
PRCOL_00000683 Prasinoderma coloniale HOM05D006927 ORTHO05D009065 1.6e-29 134.4 283 33.9
Cre01.g025150 Chlamydomonas reinhardtii HOM05D006927 ORTHO05D044296 2.0e-29 134.0 337 27.6
Thecc.05G234900 Theobroma cacao HOM05D006927 ORTHO05D009065 1.5e-27 127.9 60 91.7
SEGI_38351 Sequoiadendron giganteum HOM05D006927 ORTHO05D009065 8.3e-23 112.1 79 62.0
BcaB08g36753 Brassica carinata HOM05D006927 ORTHO05D009065 1.4e-22 111.3 136 43.4
HPP92_025520 Vanilla planifolia HOM05D006927 ORTHO05D009065 3.5e-13 80.1 157 36.9
AagrBONN_evm.TU.Sc2ySwM_368.1936 Anthoceros agrestis HOM05D006927 ORTHO05D071668 4.6e-13 79.7 260 25.8
MCO12G090 Micromonas commoda HOM05D006927 ORTHO05D049054 1.5e-11 74.7 352 23.0
CBR_g4745 Chara braunii HOM05D000019 ORTHO05D000002 2.1e-10 70.9 68 45.6
PRCOL_00002844 Prasinoderma coloniale HOM05D006927 ORTHO05D049054 3.6e-10 70.1 130 36.2
C09p59490 Brassica napus HOM05D000005 ORTHO05D040849 2.9e-07 60.5 168 26.8


User provided reference genes

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