Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0018111 Helianthus annuus HOM05D003780 ORTHO05D004463 1.4e-38 162.2 68 100.0
HanXRQChr14g0441661 Helianthus annuus HOM05D003780 ORTHO05D004463 1.3e-23 112.5 51 94.1
ECA246G0901 Erigeron canadensis HOM05D003780 ORTHO05D004463 1.6e-21 105.5 51 84.3
HanXRQChr14g0436841 Helianthus annuus HOM05D003780 ORTHO05D004463 1.6e-21 105.5 51 88.2
Ciclev10025467m.g Citrus clementina HOM05D003780 ORTHO05D004463 2.1e-21 105.1 51 86.3
HanXRQChr16g0531091 Helianthus annuus HOM05D003780 ORTHO05D004463 2.1e-21 105.1 51 82.4
MSTRG.23285 Avicennia marina HOM05D003780 ORTHO05D004463 2.7e-21 104.8 51 84.3
CSS0017089 Camellia sinensis var. sinensis HOM05D003780 ORTHO05D004463 3.6e-21 104.4 51 86.3
CSS0028269 Camellia sinensis var. sinensis HOM05D003780 ORTHO05D004463 3.6e-21 104.4 51 86.3
Solyc03g033620.3 Solanum lycopersicum HOM05D003780 ORTHO05D004463 3.6e-21 104.4 51 84.3
CANSAT01G0600 Cannabis sativa HOM05D003780 ORTHO05D004463 6.1e-21 103.6 51 84.3
Nitab4.5_0001912g0010 Nicotiana tabacum HOM05D003780 ORTHO05D004463 6.1e-21 103.6 51 80.4
Nitab4.5_0005814g0030 Nicotiana tabacum HOM05D003780 ORTHO05D004463 6.1e-21 103.6 51 80.4
Lj2C464T1 Lonicera japonica HOM05D003780 ORTHO05D004463 8.0e-21 103.2 50 84.0
TWI73G1264 Tripterygium wilfordii HOM05D003780 ORTHO05D004463 8.0e-21 103.2 51 82.4
Peaxi162Scf00010g00516 Petunia axillaris HOM05D003780 ORTHO05D004463 1.0e-20 102.8 51 80.4
Sc03g0003480 Simmondsia chinensis HOM05D003780 ORTHO05D004463 1.0e-20 102.8 51 82.4
Cpa.g.sc6.218 Carica papaya HOM05D003780 ORTHO05D004463 1.4e-20 102.4 51 82.4
Migut.H02478 Erythranthe guttata HOM05D003780 ORTHO05D004463 1.4e-20 102.4 51 80.4
THA.LOC104807484 Tarenaya hassleriana HOM05D003780 ORTHO05D004463 1.4e-20 102.4 51 84.3
Sopen03g006410 Solanum pennellii HOM05D003780 ORTHO05D004463 1.8e-20 102.1 51 82.4
CAN.G785.7 Capsicum annuum HOM05D003780 ORTHO05D004463 3.0e-20 101.3 51 82.4
BcaNung00751 Brassica carinata HOM05D003780 ORTHO05D004463 4.0e-20 100.9 51 82.4
A01p02560 Brassica napus HOM05D003780 ORTHO05D004463 4.0e-20 100.9 51 82.4
C01p02740 Brassica napus HOM05D003780 ORTHO05D004463 4.0e-20 100.9 51 82.4
BolC1t00264H Brassica oleracea HOM05D003780 ORTHO05D004463 4.0e-20 100.9 51 82.4
Aa31LG6G13100 Aethionema arabicum HOM05D003780 ORTHO05D004463 6.8e-20 100.1 51 80.4
Carub.0007s0404 Capsella rubella HOM05D003780 ORTHO05D004463 6.8e-20 100.1 51 80.4
Hma1.2p1_0743F.1_g211480 Hydrangea macrophylla HOM05D003780 ORTHO05D004463 6.8e-20 100.1 51 80.4
Rhsim10G0214200 Rhododendron simsii HOM05D003780 ORTHO05D004463 6.8e-20 100.1 51 80.4
AL7G14860 Arabidopsis lyrata HOM05D003780 ORTHO05D004463 8.8e-20 99.8 51 78.4
CARHR244600 Cardamine hirsuta HOM05D003780 ORTHO05D004463 8.8e-20 99.8 51 78.4
Duzib147G1231 Durio zibethinus HOM05D003780 ORTHO05D004463 8.8e-20 99.8 51 80.4
ECA238G4346 Erigeron canadensis HOM05D003780 ORTHO05D004463 8.8e-20 99.8 51 84.3
Sp7g33940 Schrenkiella parvula HOM05D003780 ORTHO05D004463 8.8e-20 99.8 51 78.4
Manes.01G143200 Manihot esculenta HOM05D003780 ORTHO05D004463 1.2e-19 99.4 51 80.4
Manes.02G101700 Manihot esculenta HOM05D003780 ORTHO05D004463 1.2e-19 99.4 51 80.4
RcHm_v2.0_Chr2g0099781 Rosa chinensis HOM05D003780 ORTHO05D004463 1.2e-19 99.4 51 78.4
Atru.chr3.771 Acer truncatum HOM05D003780 ORTHO05D004463 1.5e-19 99.0 51 80.4
Cc07_g10460 Coffea canephora HOM05D003780 ORTHO05D004463 1.5e-19 99.0 51 80.4
Gohir.A11G177800 Gossypium hirsutum HOM05D003780 ORTHO05D004463 1.5e-19 99.0 51 80.4
Gohir.D11G185500 Gossypium hirsutum HOM05D003780 ORTHO05D004463 1.5e-19 99.0 51 80.4
Gorai.007G197100 Gossypium raimondii HOM05D003780 ORTHO05D004463 1.5e-19 99.0 51 80.4
MD02G1110800 Malus domestica HOM05D003780 ORTHO05D004463 1.5e-19 99.0 51 80.4
AUR62007654 Chenopodium quinoa HOM05D003780 ORTHO05D004463 2.0e-19 98.6 51 80.4
Lsat_1_v5_gn_3_73741 Lactuca sativa HOM05D003780 ORTHO05D004463 2.0e-19 98.6 50 78.0
Thecc.01G022600 Theobroma cacao HOM05D003780 ORTHO05D004463 2.0e-19 98.6 51 78.4
BcaC04g22932 Brassica carinata HOM05D003780 ORTHO05D004463 2.6e-19 98.2 51 78.4
A09p11700 Brassica napus HOM05D003780 ORTHO05D004463 2.6e-19 98.2 51 78.4
C09p13760 Brassica napus HOM05D003780 ORTHO05D004463 2.6e-19 98.2 51 78.4
BolC9t54265H Brassica oleracea HOM05D003780 ORTHO05D004463 2.6e-19 98.2 51 78.4
CARHR108560 Cardamine hirsuta HOM05D003780 ORTHO05D004463 2.6e-19 98.2 51 78.4
Medtr8g076210 Medicago truncatula HOM05D003780 ORTHO05D004463 2.6e-19 98.2 51 82.4
unitig_60.g25535 Utricularia gibba HOM05D003780 ORTHO05D004463 2.6e-19 98.2 51 78.4
BcaNung03015 Brassica carinata HOM05D003780 ORTHO05D004463 3.4e-19 97.8 51 76.5
A03p64110 Brassica napus HOM05D003780 ORTHO05D004463 3.4e-19 97.8 51 76.5
C07p61590 Brassica napus HOM05D003780 ORTHO05D004463 3.4e-19 97.8 51 76.5
BolC7t46582H Brassica oleracea HOM05D003780 ORTHO05D004463 3.4e-19 97.8 51 76.5
BraA03t15476Z Brassica rapa HOM05D003780 ORTHO05D004463 3.4e-19 97.8 51 76.5
ClCG07G008330 Citrullus lanatus HOM05D003780 ORTHO05D004463 3.4e-19 97.8 51 82.4
MELO3C016371.2 Cucumis melo HOM05D003780 ORTHO05D004463 3.4e-19 97.8 51 82.4
DCAR_025992 Daucus carota HOM05D003780 ORTHO05D004463 3.4e-19 97.8 51 78.4
Dinv40062 Davidia involucrata HOM05D003780 ORTHO05D004463 3.4e-19 97.8 51 78.4
Eucgr.J02399 Eucalyptus grandis HOM05D003780 ORTHO05D004463 3.4e-19 97.8 51 78.4
TAR376G0185 Trochodendron aralioides HOM05D003780 ORTHO05D004463 3.4e-19 97.8 51 78.4
BcaNung04791 Brassica carinata HOM05D003780 ORTHO05D004463 4.4e-19 97.4 51 74.5
Thhalv10022659m.g Eutrema salsugineum HOM05D003780 ORTHO05D004463 4.4e-19 97.4 51 76.5
Thhalv10025043m.g Eutrema salsugineum HOM05D003780 ORTHO05D004463 4.4e-19 97.4 51 74.5
PSO541G5535 Papaver somniferum HOM05D003780 ORTHO05D004463 4.4e-19 97.4 51 80.4
PSO675G4130 Papaver somniferum HOM05D003780 ORTHO05D004463 4.4e-19 97.4 51 80.4
AT4G36195 Arabidopsis thaliana HOM05D003780 ORTHO05D004463 5.7e-19 97.1 51 76.5
BcaB07g31688 Brassica carinata HOM05D003780 ORTHO05D004463 5.7e-19 97.1 51 76.5
GSVIVG01018819001 Vitis vinifera HOM05D003780 ORTHO05D004463 5.7e-19 97.1 51 76.5
FvH4_1g12120 Fragaria vesca HOM05D003780 ORTHO05D004463 7.5e-19 96.7 51 76.5
FAN26G1155 Fragaria x ananassa HOM05D003780 ORTHO05D004463 7.5e-19 96.7 51 76.5
FAN28G2406 Fragaria x ananassa HOM05D003780 ORTHO05D004463 7.5e-19 96.7 51 76.5
arahy.Tifrunner.gnm1.ann1.BM4PI5 Arachis hypogaea HOM05D003780 ORTHO05D004463 9.7e-19 96.3 51 78.4
EL10As8g23845 Beta vulgaris HOM05D003780 ORTHO05D004463 9.7e-19 96.3 51 78.4
Prupe.7G165600 Prunus persica HOM05D003780 ORTHO05D004463 9.7e-19 96.3 51 78.4
Sed0002051 Sechium edule HOM05D003780 ORTHO05D004463 9.7e-19 96.3 51 80.4
THA.LOC104804255 Tarenaya hassleriana HOM05D003780 ORTHO05D004463 9.7e-19 96.3 51 78.4
AT4G36190 Arabidopsis thaliana HOM05D003780 ORTHO05D004463 1.3e-18 95.9 51 76.5
CDE09G1412 Ceratophyllum demersum HOM05D003780 ORTHO05D004463 1.3e-18 95.9 51 76.5
COL.COLO4_21956 Corchorus olitorius HOM05D003780 ORTHO05D004463 1.3e-18 95.9 53 79.2
MD15G1248700 Malus domestica HOM05D003780 ORTHO05D004463 1.3e-18 95.9 51 78.4
vmacro21907 Vaccinium macrocarpon HOM05D003780 ORTHO05D004463 1.3e-18 95.9 51 76.5
Actinidia26076 Actinidia chinensis HOM05D003780 ORTHO05D004463 1.7e-18 95.5 51 76.5
Ca_22363_v3 Cicer arietinum L. HOM05D003780 ORTHO05D004463 1.7e-18 95.5 51 78.4
Duzib187G0337 Durio zibethinus HOM05D003780 ORTHO05D004463 1.7e-18 95.5 51 76.5
Ah.03g141600 Amaranthus hybridus HOM05D003780 ORTHO05D004463 2.2e-18 95.1 51 78.4
BraA09t36815Z Brassica rapa HOM05D003780 ORTHO05D004463 2.2e-18 95.1 51 76.5
Cfa006947 Carpinus fangiana HOM05D003780 ORTHO05D004463 2.2e-18 95.1 51 76.5
CsaV3_4G005800 Cucumis sativus L. HOM05D003780 ORTHO05D004463 2.2e-18 95.1 51 78.4
Lsat_1_v5_gn_2_78501 Lactuca sativa HOM05D003780 ORTHO05D004463 2.2e-18 95.1 51 78.4
FAN19G1040 Fragaria x ananassa HOM05D003780 ORTHO05D004463 2.8e-18 94.7 51 74.5
Nn5g29227 Nelumbo nucifera HOM05D003780 ORTHO05D004463 2.8e-18 94.7 53 75.5
Sp3g31510 Schrenkiella parvula HOM05D003780 ORTHO05D004463 2.8e-18 94.7 51 74.5
Aa31LG8G15240 Aethionema arabicum HOM05D003780 ORTHO05D004463 3.7e-18 94.4 51 74.5
CiPaw.08G135200 Carya illinoinensis HOM05D003780 ORTHO05D004463 3.7e-18 94.4 51 74.5
Lj4g0017051 Lotus japonicus HOM05D003780 ORTHO05D004463 3.7e-18 94.4 51 76.5
Medtr5g021530 Medicago truncatula HOM05D003780 ORTHO05D004463 3.7e-18 94.4 51 76.5
Psat2g155880 Pisum sativum HOM05D003780 ORTHO05D004463 4.8e-18 94.0 51 76.5
TPR.G2383 Trifolium pratense HOM05D003780 ORTHO05D004463 4.8e-18 94.0 51 76.5
Ca_24899_v3 Cicer arietinum L. HOM05D003780 ORTHO05D004463 6.3e-18 93.6 51 74.5
Haze_03805 Corylus avellana HOM05D003780 ORTHO05D004463 6.3e-18 93.6 51 74.5
Potri.007G015400 Populus trichocarpa HOM05D003780 ORTHO05D004463 6.3e-18 93.6 51 72.5
arahy.Tifrunner.gnm1.ann1.5Y5RJ5 Arachis hypogaea HOM05D003780 ORTHO05D004463 8.3e-18 93.2 51 76.5
PGR102G0875 Punica granatum HOM05D003780 ORTHO05D004463 8.3e-18 93.2 51 74.5
Sabra07G0012400 Salix brachista HOM05D003780 ORTHO05D004463 8.3e-18 93.2 51 70.6
Sed0025104 Sechium edule HOM05D003780 ORTHO05D004463 8.3e-18 93.2 51 78.4
TWI09G0133 Tripterygium wilfordii HOM05D003780 ORTHO05D004463 8.3e-18 93.2 51 76.5
ATR0149G013 Amborella trichopoda HOM05D003780 ORTHO05D004463 1.1e-17 92.8 51 72.5
Glyma.16G130700 Glycine max HOM05D003780 ORTHO05D004463 1.1e-17 92.8 51 78.4
Lalb_Chr09g0321911 Lupinus albus HOM05D003780 ORTHO05D004463 1.1e-17 92.8 51 74.5
QL06p033947 Quercus lobata HOM05D003780 ORTHO05D004463 1.4e-17 92.4 51 76.5
Sed0009086 Sechium edule HOM05D003780 ORTHO05D004463 1.4e-17 92.4 49 79.6
CiPaw.07G056300 Carya illinoinensis HOM05D003780 ORTHO05D004463 1.8e-17 92.0 51 72.5
AL3G51250 Arabidopsis lyrata HOM05D003780 ORTHO05D004463 2.4e-17 91.7 51 72.5
Carub.0003s3221 Capsella rubella HOM05D003780 ORTHO05D004463 2.4e-17 91.7 51 72.5
Lj2g0008626 Lotus japonicus HOM05D003780 ORTHO05D004463 5.3e-17 90.5 51 72.5
Aqoxy6G02377 Aquilegia oxysepala HOM05D003780 ORTHO05D004463 7.0e-17 90.1 56 71.4
Pp3c21_22560 Physcomitrium patens HOM05D003780 ORTHO05D004463 7.0e-17 90.1 51 74.5
Potri.007G015300 Populus trichocarpa HOM05D003780 ORTHO05D004463 7.0e-17 90.1 51 72.5
Hund14033 Selenicereus undatus HOM05D003780 ORTHO05D004463 7.0e-17 90.1 51 72.5
AagrBONN_evm.TU.Sc2ySwM_344.4858 Anthoceros agrestis HOM05D003780 ORTHO05D004463 9.1e-17 89.7 51 74.5
AT2G18080 Arabidopsis thaliana HOM05D003780 ORTHO05D004463 1.6e-16 89.0 51 68.6
Gohir.D11G185400 Gossypium hirsutum HOM05D003780 ORTHO05D004463 4.5e-16 87.4 51 70.6
Gorai.007G197000 Gossypium raimondii HOM05D003780 ORTHO05D004463 4.5e-16 87.4 51 70.6
Mapoly0040s0090 Marchantia polymorpha HOM05D003780 ORTHO05D004463 4.5e-16 87.4 51 72.5
Psat4g097480 Pisum sativum HOM05D003780 ORTHO05D004463 4.5e-16 87.4 51 72.5
Zm00001eb220420 Zea mays HOM05D003780 ORTHO05D004463 4.5e-16 87.4 51 72.5
Lalb_Chr05g0229921 Lupinus albus HOM05D003780 ORTHO05D004463 5.9e-16 87.0 51 72.5
HPP92_020998 Vanilla planifolia HOM05D003780 ORTHO05D004463 5.9e-16 87.0 54 72.2
Phvul.003G259700 Phaseolus vulgaris HOM05D003780 ORTHO05D004463 1.7e-15 85.5 51 66.7
Glyma.16G130900 Glycine max HOM05D003780 ORTHO05D004463 2.2e-15 85.1 51 66.7
BraA01t00242Z Brassica rapa HOM05D003780 ORTHO05D004463 2.9e-15 84.7 76 53.9
Gohir.A11G177601 Gossypium hirsutum HOM05D003780 ORTHO05D004463 2.9e-15 84.7 45 73.3
Sabra07G0012300 Salix brachista HOM05D003780 ORTHO05D004463 2.9e-15 84.7 57 66.7
FAN23G1382 Fragaria x ananassa HOM05D003780 ORTHO05D004463 3.8e-15 84.3 74 54.1
Os10g0511400 Oryza sativa ssp. japonica HOM05D003780 ORTHO05D004463 1.5e-14 82.4 51 70.6
AUR62043233 Chenopodium quinoa HOM05D003780 ORTHO05D004463 4.2e-14 80.9 40 80.0
TPR.G30059 Trifolium pratense HOM05D003780 ORTHO05D004463 5.5e-14 80.5 44 75.0
CANSAT01G0314 Cannabis sativa HOM05D003780 ORTHO05D004463 7.2e-14 80.1 42 71.4
SMO268G0003 Selaginella moellendorffii HOM05D003780 ORTHO05D004463 3.6e-13 77.8 46 67.4
SMO268G0007 Selaginella moellendorffii HOM05D003780 ORTHO05D004463 3.6e-13 77.8 46 67.4
SMO201G0038 Selaginella moellendorffii HOM05D003780 ORTHO05D004463 1.8e-12 75.5 46 65.2
SMO201G0083 Selaginella moellendorffii HOM05D003780 ORTHO05D004463 1.8e-12 75.5 47 63.8
SEGI_08580 Sequoiadendron giganteum HOM05D003780 ORTHO05D004463 2.3e-07 58.5 33 75.8
SGA_v2.0_scaffold2G01250 Striga asiatica HOM05D003780 ORTHO05D004463 2.9e-07 58.2 30 70.0
SMO172G0049 Selaginella moellendorffii HOM05D003780 ORTHO05D004463 1.5e-06 55.8 39 53.8
Hund16478 Selenicereus undatus HOM05D003780 ORTHO05D004463 1.5e-06 55.8 30 73.3
BcaNung00750 Brassica carinata HOM05D003780 ORTHO05D004463 1.9e-06 55.5 30 66.7
MD15G1248600 Malus domestica HOM05D003780 ORTHO05D004463 2.5e-06 55.1 30 70.0


User provided reference genes

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