Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0017761 Helianthus annuus HOM05D006254 ORTHO05D007409 1.3e-284 982.2 463 100.0
ECA248G3109 Erigeron canadensis HOM05D006254 ORTHO05D007409 9.9e-240 833.2 459 85.0
Lsat_1_v5_gn_1_78401 Lactuca sativa HOM05D006254 ORTHO05D007409 6.1e-221 770.8 435 82.8
Dinv02479 Davidia involucrata HOM05D006254 ORTHO05D007409 7.2e-214 747.3 460 75.4
Potri.004G137900 Populus trichocarpa HOM05D006254 ORTHO05D007409 1.8e-201 706.1 463 70.2
QL10p038598 Quercus lobata HOM05D006254 ORTHO05D007409 3.0e-196 688.7 460 68.9
Prupe.6G059200 Prunus persica HOM05D006254 ORTHO05D007409 5.3e-193 677.9 459 67.8
GSVIVG01000233001 Vitis vinifera HOM05D003183 ORTHO05D007409 3.8e-191 671.8 461 69.4
Cfa002251 Carpinus fangiana HOM05D006254 ORTHO05D007409 6.5e-191 671.0 459 67.1
CiPaw.04G178100 Carya illinoinensis HOM05D006254 ORTHO05D007409 1.6e-189 666.4 460 67.0
MSTRG.23507 Avicennia marina HOM05D006254 ORTHO05D007409 1.4e-188 663.3 459 66.7
MD03G1072300 Malus domestica HOM05D006254 ORTHO05D007409 4.0e-188 661.8 458 65.9
TAR628G1014 Trochodendron aralioides HOM05D006254 ORTHO05D007409 4.0e-188 661.8 460 66.5
THA.LOC104803663 Tarenaya hassleriana HOM05D006254 ORTHO05D007409 1.1e-185 653.7 458 65.1
Oeu011007.1 Olea europaea HOM05D006254 ORTHO05D007409 1.8e-185 652.9 460 66.5
Cc07_g20930 Coffea canephora HOM05D006254 ORTHO05D007409 9.1e-185 650.6 504 63.5
CANSAT54G2690 Cannabis sativa HOM05D006254 ORTHO05D007409 2.7e-184 649.0 463 63.7
MELO3C033099.2 Cucumis melo HOM05D006254 ORTHO05D007409 5.5e-182 641.3 460 65.9
Gohir.A05G375400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 1.6e-181 639.8 463 63.7
Sopen03g020950 Solanum pennellii HOM05D006254 ORTHO05D007409 3.6e-181 638.6 460 64.8
PSO017G1045 Papaver somniferum HOM05D006254 ORTHO05D007409 4.7e-181 638.3 461 64.4
Sc20g0000720 Simmondsia chinensis HOM05D006254 ORTHO05D007409 6.1e-181 637.9 469 63.5
Gorai.012G045500 Gossypium raimondii HOM05D006254 ORTHO05D007409 1.4e-180 636.7 463 63.5
CsaV3_4G030320 Cucumis sativus L. HOM05D006254 ORTHO05D007409 2.3e-180 636.0 458 64.8
Migut.H00776 Erythranthe guttata HOM05D006254 ORTHO05D007409 1.5e-179 633.3 461 62.9
Solyc03g078230.3 Solanum lycopersicum HOM05D006254 ORTHO05D007409 3.4e-179 632.1 460 64.1
Peaxi162Scf00030g00012 Petunia axillaris HOM05D006254 ORTHO05D007409 4.4e-179 631.7 441 66.7
HanXRQChr01g0017751 Helianthus annuus HOM05D006254 ORTHO05D007409 7.0e-177 624.4 448 67.9
Eucgr.I00013 Eucalyptus grandis HOM05D006254 ORTHO05D007409 2.0e-176 622.9 458 62.7
Ca_17588_v3 Cicer arietinum L. HOM05D006254 ORTHO05D007409 4.5e-176 621.7 459 62.3
TWI31G0260 Tripterygium wilfordii HOM05D006254 ORTHO05D007409 4.5e-176 621.7 424 67.0
TPR.G12754 Trifolium pratense HOM05D006254 ORTHO05D007409 1.7e-175 619.8 462 62.1
FAN21G3787 Fragaria x ananassa HOM05D006254 ORTHO05D007409 2.9e-175 619.0 469 61.2
EL10Ac4g08984 Beta vulgaris HOM05D006254 ORTHO05D007409 3.8e-175 618.6 493 59.8
FvH4_3g38370 Fragaria vesca HOM05D006254 ORTHO05D007409 1.1e-174 617.1 469 61.4
DCAR_009615 Daucus carota HOM05D006254 ORTHO05D007409 2.5e-174 615.9 416 69.0
PGR119G0951 Punica granatum HOM05D006254 ORTHO05D007409 2.5e-174 615.9 458 62.0
CARHR037200 Cardamine hirsuta HOM05D006254 ORTHO05D007409 5.6e-174 614.8 458 61.6
Medtr8g095410 Medicago truncatula HOM05D006254 ORTHO05D007409 1.6e-173 613.2 456 61.0
Lalb_Chr12g0202731 Lupinus albus HOM05D006254 ORTHO05D007409 2.1e-173 612.8 461 62.5
AT1G47570 Arabidopsis thaliana HOM05D006254 ORTHO05D007409 2.8e-173 612.5 459 61.4
Carub.0001s3633 Capsella rubella HOM05D006254 ORTHO05D007409 1.0e-172 610.5 459 60.6
FAN25G1911 Fragaria x ananassa HOM05D006254 ORTHO05D007409 1.0e-172 610.5 469 60.8
arahy.Tifrunner.gnm1.ann1.ZNEY68 Arachis hypogaea HOM05D006254 ORTHO05D007409 1.4e-172 610.1 461 60.1
arahy.Tifrunner.gnm1.ann1.9169VS Arachis hypogaea HOM05D006254 ORTHO05D007409 6.8e-172 607.8 461 59.9
Sp4g18960 Schrenkiella parvula HOM05D006254 ORTHO05D007409 6.8e-172 607.8 459 59.9
Aqoxy5G02669 Aquilegia oxysepala HOM05D006254 ORTHO05D007409 3.4e-171 605.5 464 61.0
Lj4g0026953 Lotus japonicus HOM05D006254 ORTHO05D007409 1.3e-170 603.6 461 59.9
BcaB02g09340 Brassica carinata HOM05D006254 ORTHO05D007409 2.2e-170 602.8 462 60.4
BcaB02g09339 Brassica carinata HOM05D006254 ORTHO05D007409 2.9e-170 602.4 462 60.4
FAN11G0663 Fragaria x ananassa HOM05D006254 ORTHO05D007409 3.7e-170 602.1 462 60.8
VMungo0251G0787 Vigna mungo HOM05D006254 ORTHO05D007409 1.4e-169 600.1 475 58.5
BcaC02g11789 Brassica carinata HOM05D006254 ORTHO05D007409 3.3e-166 589.0 461 59.9
C04p11350 Brassica napus HOM05D006254 ORTHO05D007409 3.3e-166 589.0 461 59.9
BolC4t22794H Brassica oleracea HOM05D006254 ORTHO05D007409 2.8e-165 585.9 487 57.7
BolC4t22773H Brassica oleracea HOM05D006254 ORTHO05D007409 3.1e-164 582.4 467 59.1
Thhalv10016597m.g Eutrema salsugineum HOM05D006254 ORTHO05D007409 3.1e-164 582.4 440 60.0
A05p09180 Brassica napus HOM05D006254 ORTHO05D007409 6.8e-164 581.3 483 57.6
BraA05t19873Z Brassica rapa HOM05D006254 ORTHO05D007409 2.6e-163 579.3 486 57.2
Gohir.D04G040400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 7.5e-163 577.8 463 58.7
Manes.12G085200 Manihot esculenta HOM05D006254 ORTHO05D007409 6.0e-160 568.2 352 72.4
RcHm_v2.0_Chr5g0068971 Rosa chinensis HOM05D006254 ORTHO05D007409 7.8e-160 567.8 468 57.7
SGA_v2.0_scaffold54G19570 Striga asiatica HOM05D006254 ORTHO05D007409 6.6e-159 564.7 514 55.3
CSS0012450 Camellia sinensis var. sinensis HOM05D006254 ORTHO05D007409 8.6e-159 564.3 344 73.8
FAN16G1494 Fragaria x ananassa HOM05D006254 ORTHO05D007409 1.2e-155 553.9 441 59.2
Ciclev10024761m.g Citrus clementina HOM05D003183 ORTHO05D003697 3.9e-151 538.9 374 68.2
Phvul.002G279100 Phaseolus vulgaris HOM05D006254 ORTHO05D007409 2.5e-150 536.2 420 59.3
Psat7g040840 Pisum sativum HOM05D006254 ORTHO05D007409 9.5e-150 534.3 393 60.3
AUR62036036 Chenopodium quinoa HOM05D006254 ORTHO05D007409 1.5e-147 526.9 540 49.3
Ah.04g163200 Amaranthus hybridus HOM05D006254 ORTHO05D007409 7.1e-145 518.1 460 54.8
Rhsim09G0131600 Rhododendron simsii HOM05D006254 ORTHO05D007409 9.2e-145 517.7 344 68.3
Nitab4.5_0012738g0010 Nicotiana tabacum HOM05D006254 ORTHO05D007409 2.7e-144 516.2 577 48.4
Thecc.01G235200 Theobroma cacao HOM05D006254 ORTHO05D007409 2.7e-144 516.2 406 61.1
Sabra04G0089300 Salix brachista HOM05D006254 ORTHO05D007409 3.6e-141 505.8 558 48.4
AL1G53850 Arabidopsis lyrata HOM05D006254 ORTHO05D007409 1.5e-139 500.4 348 64.7
Sed0010974 Sechium edule HOM05D006254 ORTHO05D007409 4.4e-139 498.8 377 62.9
Os11g0175500 Oryza sativa ssp. japonica HOM05D006254 ORTHO05D007409 2.2e-138 496.5 509 49.3
Glyma.05G198100 Glycine max HOM05D006254 ORTHO05D007409 7.1e-137 491.5 397 57.4
Zm00001eb200940 Zea mays HOM05D006254 ORTHO05D007409 3.5e-136 489.2 476 51.3
Migut.H00777 Erythranthe guttata HOM05D006254 ORTHO05D007409 3.3e-134 482.6 391 58.6
RcHm_v2.0_Chr2g0157071 Rosa chinensis HOM05D006254 ORTHO05D007409 3.0e-127 459.5 370 59.5
Atru.chr4.972 Acer truncatum HOM05D006254 ORTHO05D007409 3.3e-126 456.1 339 64.6
MD11G1077300 Malus domestica HOM05D006254 ORTHO05D007409 6.9e-124 448.4 377 57.8
CDE06G2483 Ceratophyllum demersum HOM05D006254 ORTHO05D007409 1.2e-123 447.6 397 54.2
Nitab4.5_0000004g0230 Nicotiana tabacum HOM05D006254 ORTHO05D007409 1.5e-115 420.6 474 48.1
MD11G1078600 Malus domestica HOM05D006254 ORTHO05D007409 4.9e-114 415.6 412 50.0
HPP92_016136 Vanilla planifolia HOM05D006254 ORTHO05D007409 1.0e-111 407.9 456 47.4
vmacro10394 Vaccinium macrocarpon HOM05D006254 ORTHO05D007409 6.9e-100 368.6 301 61.5
AUR62004819 Chenopodium quinoa HOM05D006254 ORTHO05D007409 1.2e-99 367.9 421 45.1
Hma1.2p1_0057F.1_g032170 Hydrangea macrophylla HOM05D006254 ORTHO05D007409 6.1e-96 355.5 197 77.2
unitig_65.g29879 Utricularia gibba HOM05D006254 ORTHO05D007409 9.7e-94 348.2 460 42.4
Aa31LG5G9250 Aethionema arabicum HOM05D006254 ORTHO05D007409 2.2e-93 347.1 260 61.2
Actinidia34771 Actinidia chinensis HOM05D000969 ORTHO05D000899 5.5e-89 332.4 219 70.3
unitig_62.g23450 Utricularia gibba HOM05D006254 ORTHO05D007409 1.4e-84 317.8 501 38.7
MD00G1120300 Malus domestica HOM05D006254 ORTHO05D007409 3.5e-83 313.2 258 57.8
Hund06901 Selenicereus undatus HOM05D006254 ORTHO05D007409 7.7e-83 312.0 287 54.7
Haze_25433 Corylus avellana HOM05D006254 ORTHO05D007409 8.0e-80 302.0 242 60.7
MD11G1077500 Malus domestica HOM05D006254 ORTHO05D007409 8.0e-80 302.0 298 52.3
Cpa.g.sc138.23 Carica papaya HOM05D006254 ORTHO05D007409 1.2e-75 288.1 167 73.1
Haze_25436 Corylus avellana HOM05D006254 ORTHO05D007409 2.7e-75 287.0 211 64.0
Migut.H00787 Erythranthe guttata HOM05D006254 ORTHO05D007409 1.4e-71 274.6 224 61.6
Mapoly0003s0196 Marchantia polymorpha HOM05D006254 ORTHO05D007409 3.8e-66 256.5 518 30.5
Lj4g0022315 Lotus japonicus HOM05D006254 ORTHO05D007409 5.0e-66 256.1 222 57.2
MD00G1120800 Malus domestica HOM05D006254 ORTHO05D007409 1.5e-65 254.6 166 67.5
MD11G1078400 Malus domestica HOM05D006254 ORTHO05D007409 1.2e-64 251.5 166 66.9
AagrBONN_evm.TU.Sc2ySwM_117.2849 Anthoceros agrestis HOM05D006254 ORTHO05D007409 2.5e-57 227.3 348 35.1
HanXRQChr02g0035161 Helianthus annuus HOM05D006254 ORTHO05D007409 3.0e-50 203.8 108 92.6
Haze_25432 Corylus avellana HOM05D006254 ORTHO05D007409 6.4e-45 186.0 253 41.5
Haze_25431 Corylus avellana HOM05D006254 ORTHO05D007409 1.4e-44 184.9 253 41.5
HanXRQChr13g0399511 Helianthus annuus HOM05D006254 ORTHO05D007409 6.0e-43 179.5 96 93.8
AagrBONN_evm.TU.Sc2ySwM_228.4097 Anthoceros agrestis HOM05D006254 ORTHO05D007409 2.1e-40 171.0 311 33.4
SEGI_09568 Sequoiadendron giganteum HOM05D006254 ORTHO05D007409 8.1e-40 169.1 232 41.4
ATR0584G026 Amborella trichopoda HOM05D006254 ORTHO05D007409 5.2e-39 166.4 183 44.8
Duzib264G1273 Durio zibethinus HOM05D006254 ORTHO05D007409 1.9e-33 147.9 78 78.2
RcHm_v2.0_Chr2g0157061 Rosa chinensis HOM05D006254 ORTHO05D007409 3.6e-32 143.7 88 70.5
Nn1g08418 Nelumbo nucifera HOM05D006254 ORTHO05D007409 8.1e-32 142.5 87 70.1
BolC4t22792H Brassica oleracea HOM05D006254 ORTHO05D007409 6.8e-31 139.4 135 49.6
CBR_g38543 Chara braunii HOM05D006254 ORTHO05D007409 1.1e-25 122.1 402 24.6
MD11G1077800 Malus domestica HOM05D006254 ORTHO05D007409 1.2e-24 118.6 68 69.1
MD11G1077000 Malus domestica HOM05D006254 ORTHO05D007409 2.8e-24 117.5 102 54.9
Actinidia38917 Actinidia chinensis HOM05D006254 ORTHO05D007409 4.7e-24 116.7 123 50.4
GSVIVG01038034001 Vitis vinifera HOM05D001605 ORTHO05D007409 6.2e-24 116.3 65 75.4
ClCG04G002460 Citrullus lanatus HOM05D006254 ORTHO05D007409 8.1e-24 115.9 102 55.9
AagrBONN_evm.TU.Sc2ySwM_228.4094 Anthoceros agrestis HOM05D006254 ORTHO05D007409 1.6e-19 101.7 260 28.5
Glyma.08G005450 Glycine max HOM05D006254 ORTHO05D007409 1.6e-19 101.7 76 57.9
PSO170G1462 Papaver somniferum HOM05D006254 ORTHO05D007409 7.8e-19 99.4 109 48.6
AagrBONN_evm.TU.Sc2ySwM_340.558 Anthoceros agrestis HOM05D002405 ORTHO05D002483 4.8e-16 90.1 221 26.2
Actinidia38918 Actinidia chinensis HOM05D006254 ORTHO05D007409 1.3e-13 82.0 42 81.0
Os08g0123300 Oryza sativa ssp. japonica HOM05D006254 ORTHO05D007409 2.2e-13 81.3 99 43.4
arahy.Tifrunner.gnm1.ann1.SX6F5A Arachis hypogaea HOM05D006254 ORTHO05D007409 1.9e-12 78.2 87 47.1
BolC4t22791H Brassica oleracea HOM05D006254 ORTHO05D007409 9.3e-12 75.9 54 61.1
AL1G53840 Arabidopsis lyrata HOM05D003114 ORTHO05D003519 2.0e-06 58.2 87 37.9


User provided reference genes

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