Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0017141 Helianthus annuus HOM05D005286 ORTHO05D006348 2.7e-272 941.4 487 100.0
Lsat_1_v5_gn_1_78000 Lactuca sativa HOM05D005286 ORTHO05D006348 2.2e-221 772.3 494 78.9
ECA248G0233 Erigeron canadensis HOM05D005286 ORTHO05D006348 2.7e-219 765.4 491 79.2
CSS0034769 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.9e-185 652.9 472 71.0
CSS0004303 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 5.6e-185 651.4 472 71.0
Gohir.A12G085400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 9.6e-185 650.6 471 69.4
Lj4A421T8 Lonicera japonica HOM05D005286 ORTHO05D006348 1.3e-184 650.2 492 69.3
Thecc.01G137300 Theobroma cacao HOM05D005286 ORTHO05D006348 1.1e-183 647.1 471 69.0
GSVIVG01022340001 Vitis vinifera HOM05D005286 ORTHO05D006348 3.1e-183 645.6 477 68.6
MSTRG.23499 Avicennia marina HOM05D005286 ORTHO05D006348 6.9e-183 644.4 471 71.3
Gohir.D12G083400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 1.5e-182 643.3 477 68.3
TWI75G1712 Tripterygium wilfordii HOM05D005286 ORTHO05D006348 2.0e-182 642.9 484 69.0
Oeu037874.1 Olea europaea HOM05D005286 ORTHO05D006348 1.3e-181 640.2 477 69.0
Migut.H00797 Erythranthe guttata HOM05D005286 ORTHO05D006348 6.4e-181 637.9 467 70.7
Gorai.008G094500 Gossypium raimondii HOM05D005286 ORTHO05D006348 1.9e-180 636.3 492 66.7
CiPaw.03G118000 Carya illinoinensis HOM05D005286 ORTHO05D006348 2.4e-180 636.0 464 70.0
Manes.12G159000 Manihot esculenta HOM05D005286 ORTHO05D006348 5.5e-180 634.8 472 68.4
QL10p041275 Quercus lobata HOM05D005286 ORTHO05D006348 9.3e-180 634.0 476 68.9
Actinidia16523 Actinidia chinensis HOM05D005286 ORTHO05D006348 1.2e-179 633.6 476 68.9
Cc07_g21020 Coffea canephora HOM05D005286 ORTHO05D006348 1.2e-179 633.6 476 68.9
Ciclev10000962m.g Citrus clementina HOM05D005286 ORTHO05D006348 1.6e-179 633.3 488 66.6
Atru.chr4.988 Acer truncatum HOM05D005286 ORTHO05D006348 2.3e-178 629.4 472 68.4
Duzib187G0999 Durio zibethinus HOM05D005286 ORTHO05D006348 6.7e-178 627.9 472 68.0
TAR625G0087 Trochodendron aralioides HOM05D005286 ORTHO05D006348 6.7e-178 627.9 474 67.5
Duzib147G1331 Durio zibethinus HOM05D005286 ORTHO05D006348 1.1e-177 627.1 497 65.2
Rhsim08G0000400 Rhododendron simsii HOM05D005286 ORTHO05D006348 2.5e-177 625.9 486 67.3
SGA_v2.0_scaffold189G40378 Striga asiatica HOM05D005286 ORTHO05D006348 7.4e-177 624.4 491 68.0
Solyc12g088020.1 Solanum lycopersicum HOM05D005286 ORTHO05D006348 2.1e-176 622.9 469 65.0
Prupe.4G274700 Prunus persica HOM05D005286 ORTHO05D006348 4.8e-176 621.7 471 66.7
Sopen12g030050 Solanum pennellii HOM05D005286 ORTHO05D006348 1.8e-175 619.8 469 64.8
Potri.007G101600 Populus trichocarpa HOM05D005286 ORTHO05D006348 2.4e-175 619.4 479 66.6
Hma1.2p1_3117F.1_g332810 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 4.0e-175 618.6 514 63.8
Cfa021278 Carpinus fangiana HOM05D005286 ORTHO05D006348 6.9e-175 617.8 488 66.6
Glyma.06G155750 Glycine max HOM05D005286 ORTHO05D006348 9.0e-175 617.5 468 66.9
Ca_16981_v3 Cicer arietinum L. HOM05D005286 ORTHO05D006348 1.2e-174 617.1 487 65.3
MD15G1135000 Malus domestica HOM05D005286 ORTHO05D006348 1.2e-174 617.1 471 67.3
Sabra07G0083800 Salix brachista HOM05D005286 ORTHO05D006348 1.2e-174 617.1 480 66.5
PGR119G0364 Punica granatum HOM05D005286 ORTHO05D006348 2.6e-174 615.9 485 64.1
PGSC0003DMG400045338 Solanum tuberosum HOM05D005286 ORTHO05D006348 1.0e-173 614.0 461 65.9
FAN23G2334 Fragaria x ananassa HOM05D005286 ORTHO05D006348 4.9e-173 611.7 473 65.1
Nn1g08960 Nelumbo nucifera HOM05D005286 ORTHO05D006348 6.5e-173 611.3 461 67.2
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 8.4e-173 610.9 489 65.0
Sc09g0002230 Simmondsia chinensis HOM05D005286 ORTHO05D006348 8.4e-173 610.9 482 63.9
CAN.G1104.7 Capsicum annuum HOM05D005286 ORTHO05D006348 1.9e-172 609.8 472 64.4
Lalb_Chr23g0272691 Lupinus albus HOM05D005286 ORTHO05D006348 2.5e-172 609.4 504 64.3
RcHm_v2.0_Chr2g0122521 Rosa chinensis HOM05D005286 ORTHO05D006348 2.5e-172 609.4 484 64.3
Hund21799 Selenicereus undatus HOM05D005286 ORTHO05D006348 5.5e-172 608.2 486 63.8
FvH4_1g24860 Fragaria vesca HOM05D005286 ORTHO05D006348 7.1e-172 607.8 473 64.9
FAN19G2916 Fragaria x ananassa HOM05D005286 ORTHO05D006348 7.1e-172 607.8 473 64.9
FAN28G1250 Fragaria x ananassa HOM05D005286 ORTHO05D006348 7.1e-172 607.8 473 64.9
VMungo1309G1016 Vigna mungo HOM05D005286 ORTHO05D006348 7.1e-172 607.8 482 64.5
TPR.G33580 Trifolium pratense HOM05D005286 ORTHO05D006348 2.7e-171 605.9 475 65.7
FAN26G1990 Fragaria x ananassa HOM05D005286 ORTHO05D006348 4.6e-171 605.1 473 64.5
vmacro18685 Vaccinium macrocarpon HOM05D005286 ORTHO05D006348 4.6e-171 605.1 468 66.7
Peaxi162Scf00151g00811 Petunia axillaris HOM05D005286 ORTHO05D006348 3.0e-170 602.4 499 63.5
CANSAT35G0194 Cannabis sativa HOM05D005286 ORTHO05D006348 5.1e-170 601.7 470 65.5
Ah.06g191030 Amaranthus hybridus HOM05D005286 ORTHO05D006348 1.9e-169 599.7 472 64.4
AL8G41150 Arabidopsis lyrata HOM05D005286 ORTHO05D006348 1.9e-169 599.7 461 64.0
BcaB02g09762 Brassica carinata HOM05D005286 ORTHO05D006348 1.9e-169 599.7 463 64.4
CARHR277830 Cardamine hirsuta HOM05D005286 ORTHO05D006348 3.3e-169 599.0 471 63.3
Aqoxy5G02419 Aquilegia oxysepala HOM05D005286 ORTHO05D006348 5.7e-169 598.2 478 65.1
A06p30530 Brassica napus HOM05D005286 ORTHO05D006348 7.4e-169 597.8 463 63.9
BraA06t26002Z Brassica rapa HOM05D005286 ORTHO05D006348 7.4e-169 597.8 463 63.9
AT5G63910 Arabidopsis thaliana HOM05D005286 ORTHO05D006348 1.3e-168 597.0 461 64.0
Nitab4.5_0000954g0020 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.3e-168 597.0 468 66.2
Sp2g26980 Schrenkiella parvula HOM05D005286 ORTHO05D006348 8.2e-168 594.3 480 61.5
Potri.007G101700 Populus trichocarpa HOM05D005286 ORTHO05D006348 1.1e-167 594.0 482 62.7
Aa31LG1G17980 Aethionema arabicum HOM05D005286 ORTHO05D006348 1.8e-167 593.2 477 62.9
Medtr3g096675 Medicago truncatula HOM05D005286 ORTHO05D006348 4.1e-167 592.0 482 64.1
THA.LOC104819345 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 4.1e-167 592.0 457 65.6
Carub.0008s2471 Capsella rubella HOM05D005286 ORTHO05D006348 5.3e-167 591.7 461 63.3
C03p62500 Brassica napus HOM05D005286 ORTHO05D006348 6.9e-167 591.3 490 61.2
BolC3t18507H Brassica oleracea HOM05D005286 ORTHO05D006348 6.9e-167 591.3 490 61.2
Phvul.009G154600 Phaseolus vulgaris HOM05D005286 ORTHO05D006348 1.2e-166 590.5 482 64.7
arahy.Tifrunner.gnm1.ann1.7K8RK5 Arachis hypogaea HOM05D005286 ORTHO05D006348 1.5e-166 590.1 483 62.5
EL10Ac4g09623 Beta vulgaris HOM05D005286 ORTHO05D006348 4.5e-166 588.6 517 59.8
BcaC01g02644 Brassica carinata HOM05D005286 ORTHO05D006348 4.5e-166 588.6 460 63.7
PSO170G0528 Papaver somniferum HOM05D005286 ORTHO05D006348 4.5e-166 588.6 454 65.0
CSS0028284 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.3e-165 587.0 424 69.8
arahy.Tifrunner.gnm1.ann1.ZN9YLD Arachis hypogaea HOM05D005286 ORTHO05D006348 1.7e-165 586.6 480 62.5
Sed0025698 Sechium edule HOM05D005286 ORTHO05D006348 1.5e-161 573.5 443 65.5
ClCG04G002290 Citrullus lanatus HOM05D005286 ORTHO05D006348 4.3e-161 572.0 471 63.1
MELO3C008897.2 Cucumis melo HOM05D005286 ORTHO05D006348 2.8e-160 569.3 473 63.0
CsaV3_4G030380 Cucumis sativus L. HOM05D005286 ORTHO05D006348 1.5e-158 563.5 443 64.8
THA.LOC104818420 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 1.7e-157 560.1 496 59.1
Eucgr.I00123 Eucalyptus grandis HOM05D005286 ORTHO05D006348 3.8e-157 558.9 517 58.2
ATR0138G018 Amborella trichopoda HOM05D005286 ORTHO05D006348 2.1e-155 553.1 460 62.6
AUR62000514 Chenopodium quinoa HOM05D005286 ORTHO05D006348 1.0e-154 550.8 417 66.2
AUR62006858 Chenopodium quinoa HOM05D005286 ORTHO05D006348 3.0e-154 549.3 417 65.9
Thhalv10004131m.g Eutrema salsugineum HOM05D005286 ORTHO05D006348 9.7e-153 544.3 457 61.3
HPP92_011629 Vanilla planifolia HOM05D005286 ORTHO05D006348 5.5e-148 528.5 487 56.1
Nn5g28436 Nelumbo nucifera HOM05D005286 ORTHO05D006348 1.2e-147 527.3 472 59.1
CSS0025452 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.0e-146 524.2 493 58.8
MBI06_g35210_MAGBIO Magnolia biondii HOM05D005286 ORTHO05D006348 2.0e-145 520.0 542 53.3
Gohir.D12G083401 Gossypium hirsutum HOM05D005286 ORTHO05D006348 2.4e-143 513.1 373 68.9
Zm00001eb434510 Zea mays HOM05D005286 ORTHO05D006348 5.9e-142 508.4 449 59.0
COL.COLO4_35813 Corchorus olitorius HOM05D005286 ORTHO05D006348 1.9e-140 503.4 476 57.8
Sabra07G0083900 Salix brachista HOM05D005286 ORTHO05D006348 3.2e-140 502.7 392 64.3
Nitab4.5_0000432g0040 Nicotiana tabacum HOM05D005286 ORTHO05D006348 4.2e-140 502.3 468 59.2
DCAR_019994 Daucus carota HOM05D005286 ORTHO05D006348 3.7e-136 489.2 485 57.1
Hund07236 Selenicereus undatus HOM05D005286 ORTHO05D006348 7.7e-134 481.5 407 59.2
SMO119G0327 Selaginella moellendorffii HOM05D005286 ORTHO05D006348 5.9e-126 455.3 458 51.3
Psat5g059680 Pisum sativum HOM05D005286 ORTHO05D006348 2.6e-121 439.9 330 67.0
Mapoly0032s0088 Marchantia polymorpha HOM05D005286 ORTHO05D006348 3.7e-120 436.0 440 51.4
QL10p041264 Quercus lobata HOM05D005286 ORTHO05D006348 2.9e-104 383.3 267 71.5
Hma1.2p1_0310F.1_g121020 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 1.6e-99 367.5 234 76.1
Dinv24561 Davidia involucrata HOM05D005286 ORTHO05D006348 1.1e-84 318.2 200 77.5
SEGI_22884 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 1.5e-84 317.8 239 64.0
SEGI_35897 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 1.5e-84 317.8 239 64.0
Dinv15529 Davidia involucrata HOM05D005286 ORTHO05D006348 2.5e-84 317.0 201 77.1
Cpa.g.sc37.7 Carica papaya HOM05D005286 ORTHO05D006348 2.1e-83 313.9 281 61.6
AagrBONN_evm.TU.Sc2ySwM_362.2029 Anthoceros agrestis HOM05D005286 ORTHO05D006348 9.0e-82 308.5 321 50.8
CBR_g8546 Chara braunii HOM05D005286 ORTHO05D006348 1.7e-80 304.3 300 51.7
Haze_10873 Corylus avellana HOM05D005286 ORTHO05D006348 2.9e-80 303.5 294 56.8
unitig_748.g8003 Utricularia gibba HOM05D005286 ORTHO05D006348 1.4e-79 301.2 237 66.2
Pp3c3_10560 Physcomitrium patens HOM05D005286 ORTHO05D006348 3.0e-77 293.5 323 48.9
DCAR_000205 Daucus carota HOM05D005286 ORTHO05D006348 3.1e-74 283.5 185 76.2
CSS0038762 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 4.6e-70 269.6 215 66.0
unitig_748.g8002 Utricularia gibba HOM05D005286 ORTHO05D006348 7.4e-68 262.3 175 70.9
Dinv24565 Davidia involucrata HOM05D005286 ORTHO05D006348 8.1e-67 258.8 209 64.6
Oeu039334.1 Olea europaea HOM05D005286 ORTHO05D006348 1.7e-64 251.1 178 70.8
CDE08G1426 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 3.8e-64 250.0 227 56.4
CSS0007937 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.4e-63 248.1 226 61.1
QL10p041267 Quercus lobata HOM05D005286 ORTHO05D006348 4.6e-62 243.0 219 58.4
Cpa.g.sc37.6 Carica papaya HOM05D005286 ORTHO05D006348 7.9e-54 215.7 157 66.2
CDE08G1664 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 1.4e-50 204.9 163 62.0
RcHm_v2.0_Chr6g0261231 Rosa chinensis HOM05D005286 ORTHO05D006348 4.5e-49 199.9 170 58.8
CBR_g864 Chara braunii HOM05D005286 ORTHO05D006348 7.4e-44 182.6 423 28.8
Nitab4.5_0004530g0050 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.3e-40 171.8 145 63.4
PRCOL_00003919 Prasinoderma coloniale HOM05D005286 ORTHO05D006348 1.2e-33 148.7 498 30.1
CSS0025385 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.2e-30 138.7 230 42.2
Nitab4.5_0008592g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.4e-29 135.2 117 62.4
SEGI_37681 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 6.7e-29 132.9 158 49.4
Os04g0692800 Oryza sativa ssp. japonica HOM05D005286 ORTHO05D006348 2.4e-26 124.4 143 46.9
Nitab4.5_0008217g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 5.0e-24 116.7 101 60.4
Glyma.04G210301 Glycine max HOM05D005286 ORTHO05D006348 5.3e-18 96.7 54 83.3
Cfa022134 Carpinus fangiana HOM05D005286 ORTHO05D006348 5.9e-17 93.2 276 29.7
Hma1.2p1_0310F.1_g121040 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 3.6e-14 84.0 61 63.9
Oeu039336.1 Olea europaea HOM05D001574 ORTHO05D006348 1.2e-12 79.0 54 64.8
Cre10.g425200 Chlamydomonas reinhardtii HOM05D005286 ORTHO05D006348 4.4e-12 77.0 154 35.1
Nitab4.5_0002142g0070 Nicotiana tabacum HOM05D005286 ORTHO05D006348 5.7e-12 76.6 67 55.2
CBR_g8549 Chara braunii HOM05D005286 ORTHO05D006348 9.8e-12 75.9 156 35.9
Nitab4.5_0005379g0060 Nicotiana tabacum HOM05D005286 ORTHO05D006348 9.1e-10 69.3 94 44.7
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 9.1e-10 69.3 49 75.5
Peaxi162Scf00151g00815 Petunia axillaris HOM05D005286 ORTHO05D006348 2.0e-09 68.2 76 51.3


User provided reference genes

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