Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0017101 Helianthus annuus HOM05D005619 ORTHO05D006696 2.1e-35 151.8 73 100.0
HanXRQChr08g0213181 Helianthus annuus HOM05D005619 ORTHO05D006696 1.9e-28 128.6 65 92.3
HanXRQChr15g0468911 Helianthus annuus HOM05D005619 ORTHO05D006696 1.9e-28 128.6 65 92.3
HanXRQChr09g0271791 Helianthus annuus HOM05D005619 ORTHO05D006696 8.0e-27 123.2 65 84.6
Lsat_1_v5_gn_8_41961 Lactuca sativa HOM05D005619 ORTHO05D006696 1.4e-26 122.5 65 86.2
ECA233G2873 Erigeron canadensis HOM05D005619 ORTHO05D006696 8.8e-26 119.8 65 81.5
ECA247G2146 Erigeron canadensis HOM05D005619 ORTHO05D006696 8.3e-24 113.2 65 76.9
Lj3A878T24 Lonicera japonica HOM05D005619 ORTHO05D006696 1.4e-23 112.5 63 79.4
DCAR_026757 Daucus carota HOM05D005619 ORTHO05D006696 2.9e-21 104.8 63 76.2
DCAR_023625 Daucus carota HOM05D005619 ORTHO05D006696 8.6e-21 103.2 63 74.6
Dinv16155 Davidia involucrata HOM05D005619 ORTHO05D006696 8.6e-21 103.2 63 74.6
Actinidia31994 Actinidia chinensis HOM05D005619 ORTHO05D006696 4.2e-20 100.9 63 69.8
Hma1.2p1_2256F.1_g318210 Hydrangea macrophylla HOM05D005619 ORTHO05D006696 1.6e-19 99.0 63 73.0
TAR633G2706 Trochodendron aralioides HOM05D005619 ORTHO05D006696 2.1e-19 98.6 62 75.8
CANSAT56G2799 Cannabis sativa HOM05D005619 ORTHO05D006696 3.6e-19 97.8 62 71.0
Oeu057772.1 Olea europaea HOM05D005619 ORTHO05D006696 4.7e-19 97.4 65 70.8
CSS0006168 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 1.8e-18 95.5 63 68.3
Glyma.11G229600 Glycine max HOM05D005619 ORTHO05D006696 4.0e-18 94.4 62 71.0
Glyma.18G027600 Glycine max HOM05D005619 ORTHO05D006696 4.0e-18 94.4 62 71.0
MSTRG.870 Avicennia marina HOM05D005619 ORTHO05D006696 5.2e-18 94.0 65 66.2
Lj6g0025019 Lotus japonicus HOM05D005619 ORTHO05D006696 5.2e-18 94.0 62 72.6
Prupe.2G202300 Prunus persica HOM05D005619 ORTHO05D006696 5.2e-18 94.0 62 66.1
Prupe.2G249700 Prunus persica HOM05D005619 ORTHO05D006696 5.2e-18 94.0 62 66.1
Aqoxy4G02564 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 6.8e-18 93.6 62 66.1
Lj1g0018800 Lotus japonicus HOM05D005619 ORTHO05D006696 6.8e-18 93.6 62 72.6
Lalb_Chr03g0027081 Lupinus albus HOM05D005619 ORTHO05D006696 6.8e-18 93.6 62 72.6
Nn2g11500 Nelumbo nucifera HOM05D005619 ORTHO05D006696 6.8e-18 93.6 62 71.0
Medtr3g070470 Medicago truncatula HOM05D005619 ORTHO05D006696 8.9e-18 93.2 62 74.2
TPR.G16245 Trifolium pratense HOM05D005619 ORTHO05D006696 8.9e-18 93.2 68 67.6
Aqoxy5G02842 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 1.2e-17 92.8 62 67.7
AT1G19080 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 1.2e-17 92.8 61 67.2
AT3G55490 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 1.2e-17 92.8 61 67.2
arahy.Tifrunner.gnm1.ann1.2YL4XG Arachis hypogaea HOM05D005619 ORTHO05D006696 1.2e-17 92.8 62 72.6
arahy.Tifrunner.gnm1.ann1.IDH5I9 Arachis hypogaea HOM05D005619 ORTHO05D006696 1.2e-17 92.8 62 72.6
Psat5g128520 Pisum sativum HOM05D005619 ORTHO05D006696 1.2e-17 92.8 62 72.6
Lalb_Chr01g0004131 Lupinus albus HOM05D005619 ORTHO05D006696 1.5e-17 92.4 62 71.0
Sc11g0001040 Simmondsia chinensis HOM05D005619 ORTHO05D006696 1.5e-17 92.4 62 66.1
TAR369G0168 Trochodendron aralioides HOM05D005619 ORTHO05D006696 1.5e-17 92.4 62 71.0
AL5G36640 Arabidopsis lyrata HOM05D005619 ORTHO05D006696 2.0e-17 92.0 61 65.6
Cpa.g.sc19.176 Carica papaya HOM05D005619 ORTHO05D006696 3.4e-17 91.3 62 67.7
Ciclev10033435m.g Citrus clementina HOM05D005619 ORTHO05D006696 4.4e-17 90.9 62 64.5
Thhalv10017287m.g Eutrema salsugineum HOM05D005619 ORTHO05D006696 4.4e-17 90.9 62 67.7
Potri.010G189200 Populus trichocarpa HOM05D005619 ORTHO05D006696 4.4e-17 90.9 62 66.1
Sabra08G0050000 Salix brachista HOM05D005619 ORTHO05D006696 4.4e-17 90.9 62 66.1
Migut.E00386 Erythranthe guttata HOM05D005619 ORTHO05D006696 5.7e-17 90.5 60 70.0
Manes.04G157300 Manihot esculenta HOM05D005619 ORTHO05D006696 5.7e-17 90.5 62 67.7
CARHR165540 Cardamine hirsuta HOM05D005619 ORTHO05D006696 7.5e-17 90.1 62 62.9
FAN06G3728 Fragaria x ananassa HOM05D005619 ORTHO05D006696 7.5e-17 90.1 62 62.9
Hund13861 Selenicereus undatus HOM05D005619 ORTHO05D006696 7.5e-17 90.1 62 62.9
FvH4_7g24440 Fragaria vesca HOM05D005619 ORTHO05D006696 9.8e-17 89.7 62 62.9
FAN01G2425 Fragaria x ananassa HOM05D005619 ORTHO05D006696 9.8e-17 89.7 62 62.9
FAN10G0566 Fragaria x ananassa HOM05D005619 ORTHO05D006696 9.8e-17 89.7 62 62.9
SGA_v2.0_scaffold170G38815 Striga asiatica HOM05D005619 ORTHO05D006696 9.8e-17 89.7 65 63.1
Carub.0005s2221 Capsella rubella HOM05D005619 ORTHO05D006696 1.7e-16 89.0 61 62.3
RcHm_v2.0_Chr1g0370121 Rosa chinensis HOM05D005619 ORTHO05D006696 1.7e-16 89.0 62 62.9
TWI53G0619 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 1.7e-16 89.0 62 66.1
A04p30090 Brassica napus HOM05D005619 ORTHO05D006696 2.2e-16 88.6 62 64.5
BolC4t28280H Brassica oleracea HOM05D005619 ORTHO05D006696 2.2e-16 88.6 62 64.5
BraA04t18498Z Brassica rapa HOM05D005619 ORTHO05D006696 2.2e-16 88.6 62 64.5
AUR62034382 Chenopodium quinoa HOM05D005619 ORTHO05D006696 2.2e-16 88.6 62 64.5
Potri.008G068100 Populus trichocarpa HOM05D005619 ORTHO05D006696 2.2e-16 88.6 62 64.5
CsaV3_6G001830 Cucumis sativus L. HOM05D005619 ORTHO05D006696 2.8e-16 88.2 62 64.5
Sp4g22380 Schrenkiella parvula HOM05D005619 ORTHO05D006696 2.8e-16 88.2 62 62.9
C04p07340 Brassica napus HOM05D004515 ORTHO05D006013 3.7e-16 87.8 62 64.5
CiPaw.02G192300 Carya illinoinensis HOM05D000781 ORTHO05D000643 3.7e-16 87.8 62 67.7
CiPaw.08G091200 Carya illinoinensis HOM05D005619 ORTHO05D006696 3.7e-16 87.8 62 66.1
Sed0003089 Sechium edule HOM05D005619 ORTHO05D006696 3.7e-16 87.8 62 64.5
MBI05_g05306_MAGBIO Magnolia biondii HOM05D005619 ORTHO05D006696 4.9e-16 87.4 62 62.9
PSO339G2325 Papaver somniferum HOM05D005619 ORTHO05D006696 4.9e-16 87.4 62 61.3
Atru.chr12.29 Acer truncatum HOM05D005619 ORTHO05D006696 6.3e-16 87.0 62 62.9
ClCG11G006160 Citrullus lanatus HOM05D005619 ORTHO05D006696 6.3e-16 87.0 62 64.5
MD01G1152600 Malus domestica HOM05D005619 ORTHO05D006696 6.3e-16 87.0 62 62.9
Phvul.001G242800 Phaseolus vulgaris HOM05D005619 ORTHO05D006696 6.3e-16 87.0 67 64.2
SalBow8G4625 Salvia bowleyana HOM05D005619 ORTHO05D006696 6.3e-16 87.0 65 63.1
AUR62022323 Chenopodium quinoa HOM05D005619 ORTHO05D006696 8.3e-16 86.7 62 64.5
VMungo1383G0062 Vigna mungo HOM05D005619 ORTHO05D006696 1.1e-15 86.3 62 66.1
THA.LOC104824313 Tarenaya hassleriana HOM05D005619 ORTHO05D006696 1.4e-15 85.9 62 64.5
GSVIVG01032822001 Vitis vinifera HOM05D005619 ORTHO05D006696 1.4e-15 85.9 62 64.5
Cfa001322 Carpinus fangiana HOM05D005619 ORTHO05D006696 1.8e-15 85.5 62 67.7
CDE04G2394 Ceratophyllum demersum HOM05D005619 ORTHO05D006696 1.8e-15 85.5 62 64.5
Haze_17223 Corylus avellana HOM05D005619 ORTHO05D006696 1.8e-15 85.5 62 67.7
HPP92_000422 Vanilla planifolia HOM05D000755 ORTHO05D006696 1.8e-15 85.5 64 60.9
EL10Ac2g04534 Beta vulgaris HOM05D005619 ORTHO05D006696 2.4e-15 85.1 62 62.9
BcaC02g07392 Brassica carinata HOM05D005619 ORTHO05D006696 2.4e-15 85.1 62 62.9
BcaNung05464 Brassica carinata HOM05D005619 ORTHO05D006696 2.4e-15 85.1 62 62.9
BcaC02g07350 Brassica carinata HOM05D005619 ORTHO05D006696 3.2e-15 84.7 62 62.9
C04p67770 Brassica napus HOM05D005619 ORTHO05D006696 3.2e-15 84.7 62 62.9
unitig_52.g17125 Utricularia gibba HOM05D005619 ORTHO05D006696 3.2e-15 84.7 65 61.5
HPP92_000355 Vanilla planifolia HOM05D000755 ORTHO05D000642 3.2e-15 84.7 64 60.9
COL.COLO4_25718 Corchorus olitorius HOM05D005619 ORTHO05D006696 4.1e-15 84.3 64 62.5
Peaxi162Scf00451g00930 Petunia axillaris HOM05D005619 ORTHO05D006696 5.4e-15 84.0 67 58.2
Aa31LG5G19540 Aethionema arabicum HOM05D005619 ORTHO05D006696 7.0e-15 83.6 61 63.9
Duzib114G0170 Durio zibethinus HOM05D005619 ORTHO05D006696 7.0e-15 83.6 62 64.5
Os08g0274700 Oryza sativa ssp. japonica HOM05D005619 ORTHO05D006696 9.2e-15 83.2 64 64.1
PGSC0003DMG400030566 Solanum tuberosum HOM05D005619 ORTHO05D006696 9.2e-15 83.2 67 58.2
Thecc.10G016900 Theobroma cacao HOM05D005619 ORTHO05D006696 9.2e-15 83.2 62 62.9
Duzib128G1619 Durio zibethinus HOM05D005619 ORTHO05D006696 1.2e-14 82.8 62 62.9
CARHR159370 Cardamine hirsuta HOM05D005619 ORTHO05D006696 1.6e-14 82.4 62 58.1
Gohir.A06G163800 Gossypium hirsutum HOM05D005619 ORTHO05D006696 2.0e-14 82.0 62 61.3
Gohir.D06G169500 Gossypium hirsutum HOM05D005619 ORTHO05D006696 2.0e-14 82.0 62 61.3
Gorai.010G198200 Gossypium raimondii HOM05D005619 ORTHO05D006696 2.0e-14 82.0 62 61.3
CARHR135030 Cardamine hirsuta HOM05D005619 ORTHO05D006696 2.7e-14 81.6 62 59.7
Solyc05g008620.4 Solanum lycopersicum HOM05D005619 ORTHO05D006696 2.7e-14 81.6 67 56.7
Sopen05g004460 Solanum pennellii HOM05D005619 ORTHO05D006696 2.7e-14 81.6 67 56.7
Actinidia33632 Actinidia chinensis HOM05D005619 ORTHO05D006696 3.5e-14 81.3 50 72.0
QL08p063145 Quercus lobata HOM05D005619 ORTHO05D006696 4.6e-14 80.9 62 62.9
Eucgr.G03057 Eucalyptus grandis HOM05D005619 ORTHO05D006696 5.9e-14 80.5 62 62.9
CAN.G1489.22 Capsicum annuum HOM05D005619 ORTHO05D006696 7.8e-14 80.1 65 58.5
Peaxi162Scf00205g01136 Petunia axillaris HOM05D005619 ORTHO05D006696 7.8e-14 80.1 66 56.1
Zm00001eb412290 Zea mays HOM05D005619 ORTHO05D006696 7.8e-14 80.1 64 60.9
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 1.7e-13 79.0 57 64.9
Cc03_g10740 Coffea canephora HOM05D005619 ORTHO05D006696 1.7e-13 79.0 65 58.5
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 2.9e-13 78.2 62 62.9
Zm00001eb198650 Zea mays HOM05D005619 ORTHO05D006696 2.9e-13 78.2 64 60.9
SMO356G0622 Selaginella moellendorffii HOM05D005619 ORTHO05D006696 6.6e-13 77.0 64 56.2
PGR142G0483 Punica granatum HOM05D005619 ORTHO05D006696 8.6e-13 76.6 62 59.7
Cc03_g13530 Coffea canephora HOM05D005619 ORTHO05D006696 1.5e-12 75.9 65 56.9
ATR0481G004 Amborella trichopoda HOM05D005619 ORTHO05D006696 3.3e-12 74.7 62 54.8
AagrBONN_evm.TU.Sc2ySwM_228.5247 Anthoceros agrestis HOM05D005619 ORTHO05D006696 1.6e-11 72.4 59 52.5
CSS0006460 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 3.1e-10 68.2 63 55.6
HanXRQChr12g0375531 Helianthus annuus HOM05D005619 ORTHO05D006696 3.1e-10 68.2 35 82.9
Pp3c25_12660 Physcomitrium patens HOM05D005619 ORTHO05D006696 4.0e-10 67.8 60 46.7
AagrBONN_evm.TU.Sc2ySwM_344.729 Anthoceros agrestis HOM05D005619 ORTHO05D006696 2.6e-09 65.1 59 50.8
AagrBONN_evm.TU.Sc2ySwM_344.737 Anthoceros agrestis HOM05D005619 ORTHO05D006696 2.6e-09 65.1 59 50.8
Nitab4.5_0000350g0020 Nicotiana tabacum HOM05D005619 ORTHO05D006696 4.4e-09 64.3 51 60.8
TWI73G0774 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 9.8e-09 63.2 63 49.2
CBR_g38120 Chara braunii HOM05D005619 ORTHO05D006696 2.2e-08 62.0 58 44.8
Mapoly0053s0030 Marchantia polymorpha HOM05D005619 ORTHO05D006696 8.3e-08 60.1 62 45.2
Mapoly0034s0059 Marchantia polymorpha HOM05D005619 ORTHO05D006696 1.9e-07 58.9 64 42.2
FAN06G2505 Fragaria x ananassa HOM05D005619 ORTHO05D006696 9.2e-07 56.6 62 48.4
SalBow8G2997 Salvia bowleyana HOM05D005619 ORTHO05D006696 3.5e-06 54.7 67 47.8


User provided reference genes

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