Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0016481 Helianthus annuus HOM05D007963 ORTHO05D009967 4.2e-65 251.1 122 100.0
Lsat_1_v5_gn_1_105740 Lactuca sativa HOM05D007963 ORTHO05D009967 6.2e-48 194.1 122 73.8
MBI04_g34432_MAGBIO Magnolia biondii HOM05D007963 ORTHO05D009967 3.3e-25 118.6 122 54.1
Atru.chr11.2601 Acer truncatum HOM05D007963 ORTHO05D009967 6.2e-24 114.4 125 51.2
TAR369G0233 Trochodendron aralioides HOM05D007963 ORTHO05D009967 3.1e-23 112.1 127 52.0
CSS0005909 Camellia sinensis var. sinensis HOM05D007963 ORTHO05D009967 4.0e-23 111.7 120 49.2
MSTRG.20574 Avicennia marina HOM05D007963 ORTHO05D009967 6.9e-23 110.9 114 50.9
Thecc.01G408600 Theobroma cacao HOM05D007963 ORTHO05D009967 3.4e-22 108.6 125 48.8
SalBow5G1437 Salvia bowleyana HOM05D007963 ORTHO05D009967 9.9e-22 107.1 89 60.7
SalBow5G4167 Salvia bowleyana HOM05D007963 ORTHO05D009967 9.9e-22 107.1 89 60.7
DCAR_003219 Daucus carota HOM05D007963 ORTHO05D009967 1.3e-21 106.7 114 53.5
QL04p008099 Quercus lobata HOM05D007963 ORTHO05D009967 1.7e-21 106.3 121 46.3
QL04p008549 Quercus lobata HOM05D007963 ORTHO05D009967 1.7e-21 106.3 121 46.3
Nn2g15279 Nelumbo nucifera HOM05D007963 ORTHO05D009967 2.2e-21 105.9 125 44.0
RcHm_v2.0_Chr7g0228141 Rosa chinensis HOM05D007963 ORTHO05D009967 2.9e-21 105.5 124 44.4
Prupe.2G017200 Prunus persica HOM05D007963 ORTHO05D009967 8.4e-21 104.0 94 55.3
Migut.B01286 Erythranthe guttata HOM05D007963 ORTHO05D009967 1.1e-20 103.6 122 48.4
PGSC0003DMG400023738 Solanum tuberosum HOM05D007963 ORTHO05D009967 1.1e-20 103.6 130 46.9
FvH4_5g32100 Fragaria vesca HOM05D007963 ORTHO05D009967 1.9e-20 102.8 124 46.0
Potri.009G059100 Populus trichocarpa HOM05D007963 ORTHO05D009967 1.9e-20 102.8 119 48.7
Hma1.2p1_2160F.1_g315600 Hydrangea macrophylla HOM05D007963 ORTHO05D009967 3.2e-20 102.1 67 64.2
CiPaw.13G006800 Carya illinoinensis HOM05D007963 ORTHO05D009967 7.1e-20 100.9 124 45.2
vmacro13678 Vaccinium macrocarpon HOM05D007963 ORTHO05D009967 1.2e-19 100.1 124 47.6
Duzib133G0999 Durio zibethinus HOM05D007963 ORTHO05D009967 2.1e-19 99.4 124 44.4
Cfa010795 Carpinus fangiana HOM05D007963 ORTHO05D009967 3.5e-19 98.6 123 47.2
Haze_03176 Corylus avellana HOM05D007963 ORTHO05D009967 4.6e-19 98.2 123 47.2
MD02G1308200 Malus domestica HOM05D007963 ORTHO05D009967 7.9e-19 97.4 92 52.2
Sopen10g031160 Solanum pennellii HOM05D007963 ORTHO05D009967 1.3e-18 96.7 89 55.1
Manes.07G007300 Manihot esculenta HOM05D007963 ORTHO05D009967 2.3e-18 95.9 124 41.9
Ciclev10033085m.g Citrus clementina HOM05D007963 ORTHO05D009967 6.6e-18 94.4 126 45.2
Gohir.A08G143400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 8.7e-18 94.0 70 62.9
Gorai.004G171400 Gossypium raimondii HOM05D007963 ORTHO05D009967 8.7e-18 94.0 70 62.9
CiPaw.14G001400 Carya illinoinensis HOM05D007963 ORTHO05D009967 1.5e-17 93.2 116 44.0
Eucgr.J01210 Eucalyptus grandis HOM05D007963 ORTHO05D009967 1.5e-17 93.2 73 60.3
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 1.9e-17 92.8 89 51.7
COL.COLO4_04871 Corchorus olitorius HOM05D007963 ORTHO05D009967 2.5e-17 92.4 93 54.8
Gohir.D08G164400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 2.5e-17 92.4 60 68.3
unitig_61.g26362 Utricularia gibba HOM05D007963 ORTHO05D009967 9.6e-17 90.5 90 52.2
AUR62009397 Chenopodium quinoa HOM05D007963 ORTHO05D009967 1.3e-16 90.1 80 57.5
Lj3g0025556 Lotus japonicus HOM05D007963 ORTHO05D009967 1.3e-16 90.1 102 51.0
Sed0018324 Sechium edule HOM05D007963 ORTHO05D009967 1.3e-16 90.1 96 47.9
Sed0005364 Sechium edule HOM05D007963 ORTHO05D009967 4.8e-16 88.2 92 48.9
TWI09G0461 Tripterygium wilfordii HOM05D007963 ORTHO05D009967 6.2e-16 87.8 87 52.9
Sabra09G0043500 Salix brachista HOM05D007963 ORTHO05D009967 1.1e-15 87.0 112 45.5
Sc23g0005920 Simmondsia chinensis HOM05D007963 ORTHO05D009967 1.1e-15 87.0 126 41.3
Rhsim07G0056600 Rhododendron simsii HOM05D007963 ORTHO05D009967 1.4e-15 86.7 97 47.4
ClCG10G012280 Citrullus lanatus HOM05D007963 ORTHO05D009967 2.4e-15 85.9 100 48.0
Os03g0217000 Oryza sativa ssp. japonica HOM05D007963 ORTHO05D009967 2.4e-15 85.9 57 66.7
SGA_v2.0_scaffold4G02518 Striga asiatica HOM05D007963 ORTHO05D009967 3.1e-15 85.5 61 62.3
Lalb_Chr20g0107921 Lupinus albus HOM05D007963 ORTHO05D009967 6.9e-15 84.3 122 41.0
MELO3C023985.2 Cucumis melo HOM05D007963 ORTHO05D009967 1.2e-14 83.6 82 53.7
CsaV3_3G032070 Cucumis sativus L. HOM05D007963 ORTHO05D009967 1.2e-14 83.6 85 54.1
VMungo1127G0040 Vigna mungo HOM05D007963 ORTHO05D009967 3.4e-14 82.0 97 44.3
Zm00001eb400040 Zea mays HOM05D007963 ORTHO05D009967 3.4e-14 82.0 99 42.4
Phvul.011G012801 Phaseolus vulgaris HOM05D007963 ORTHO05D009967 1.2e-11 73.6 56 58.9
Medtr4g039540 Medicago truncatula HOM05D007963 ORTHO05D009967 1.6e-11 73.2 38 78.9
Glyma.12G008400 Glycine max HOM05D007963 ORTHO05D009967 2.7e-11 72.4 92 46.7
A04p07310 Brassica napus HOM05D007963 ORTHO05D009967 8.7e-10 67.4 90 42.2
BraA04t16426Z Brassica rapa HOM05D007963 ORTHO05D009967 8.7e-10 67.4 90 42.2
Thhalv10010836m.g Eutrema salsugineum HOM05D007963 ORTHO05D009967 1.5e-09 66.6 43 69.8
BcaNung06087 Brassica carinata HOM05D007963 ORTHO05D009967 1.9e-09 66.2 100 42.0
A09p45130 Brassica napus HOM05D007963 ORTHO05D009967 1.9e-09 66.2 60 51.7
BraA09t39974Z Brassica rapa HOM05D007963 ORTHO05D009967 1.9e-09 66.2 60 51.7
Cpa.g.sc125.16 Carica papaya HOM05D007963 ORTHO05D009967 1.9e-09 66.2 75 52.0
BolC8t50349H Brassica oleracea HOM05D007963 ORTHO05D009967 2.5e-09 65.9 105 37.1
CARHR161770 Cardamine hirsuta HOM05D007963 ORTHO05D009967 2.5e-09 65.9 43 67.4
BcaB01g00449 Brassica carinata HOM05D007963 ORTHO05D009967 3.3e-09 65.5 105 37.1
C08p27320 Brassica napus HOM05D007963 ORTHO05D009967 3.3e-09 65.5 105 37.1
ATR0332G088 Amborella trichopoda HOM05D007963 ORTHO05D009967 5.6e-09 64.7 55 54.5
BcaNung06964 Brassica carinata HOM05D007963 ORTHO05D009967 5.6e-09 64.7 93 41.9
BcaB02g08592 Brassica carinata HOM05D007963 ORTHO05D009967 7.4e-09 64.3 90 40.0
BcaC02g09285 Brassica carinata HOM05D007963 ORTHO05D009967 9.6e-09 63.9 90 40.0
AL5G32620 Arabidopsis lyrata HOM05D007963 ORTHO05D009967 3.7e-08 62.0 48 62.5
SEGI_13442 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 3.7e-08 62.0 35 71.4
SEGI_37070 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 3.7e-08 62.0 35 71.4
AT3G52070 Arabidopsis thaliana HOM05D007963 ORTHO05D009967 8.1e-08 60.8 48 60.4
Carub.0005s1839 Capsella rubella HOM05D007963 ORTHO05D009967 1.8e-07 59.7 49 59.2
Mapoly0032s0107 Marchantia polymorpha HOM05D025110 ORTHO05D009967 1.5e-06 56.6 78 44.9
Aa31LG10G7140 Aethionema arabicum HOM05D007963 ORTHO05D009967 2.6e-06 55.8 36 66.7
Pp3c24_5190 Physcomitrium patens HOM05D025110 ORTHO05D009967 4.5e-06 55.1 45 53.3
AagrBONN_evm.TU.Sc2ySwM_228.4962 Anthoceros agrestis HOM05D025110 ORTHO05D009967 5.8e-06 54.7 34 64.7


User provided reference genes

Program Settings