Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0016171 Helianthus annuus HOM05D002569 ORTHO05D006728 7.9e-35 149.8 72 100.0
HanXRQChr04g0114751 Helianthus annuus HOM05D002569 ORTHO05D006728 1.1e-33 146.0 72 98.6
HanXRQChr03g0082131 Helianthus annuus HOM05D002569 ORTHO05D006728 3.3e-33 144.4 72 97.2
HanXRQChr17g0534151 Helianthus annuus HOM05D002569 ORTHO05D006728 9.4e-12 73.2 40 80.0
Lsat_1_v5_gn_6_47261 Lactuca sativa HOM05D002569 ORTHO05D006728 2.1e-11 72.0 40 80.0
AUR62000100 Chenopodium quinoa HOM05D002569 ORTHO05D006728 3.6e-11 71.2 40 75.0
AUR62019274 Chenopodium quinoa HOM05D002569 ORTHO05D006728 3.6e-11 71.2 40 75.0
Cc07_g19440 Coffea canephora HOM05D002569 ORTHO05D006728 4.6e-11 70.9 40 72.5
Atru.chr3.2604 Acer truncatum HOM05D002569 ORTHO05D006728 6.1e-11 70.5 40 75.0
Migut.D00584 Erythranthe guttata HOM05D002569 ORTHO05D006728 6.1e-11 70.5 40 72.5
Manes.14G001500 Manihot esculenta HOM05D002569 ORTHO05D006728 6.1e-11 70.5 40 75.0
SGA_v2.0_scaffold247G44859 Striga asiatica HOM05D002569 ORTHO05D006728 6.1e-11 70.5 40 72.5
CSS0021823 Camellia sinensis var. sinensis HOM05D002569 ORTHO05D006728 7.9e-11 70.1 40 72.5
CSS0039826 Camellia sinensis var. sinensis HOM05D002569 ORTHO05D006728 7.9e-11 70.1 40 72.5
Peaxi162Scf00029g02913 Petunia axillaris HOM05D002569 ORTHO05D006728 7.9e-11 70.1 40 72.5
EL10Ac4g10295 Beta vulgaris HOM05D002569 ORTHO05D006728 1.0e-10 69.7 40 72.5
Ciclev10030987m.g Citrus clementina HOM05D002569 ORTHO05D006728 1.0e-10 69.7 40 72.5
ECA233G6009 Erigeron canadensis HOM05D002569 ORTHO05D006728 1.0e-10 69.7 40 77.5
Solyc11g062070.3 Solanum lycopersicum HOM05D002569 ORTHO05D006728 1.0e-10 69.7 40 72.5
Sopen11g024050 Solanum pennellii HOM05D002569 ORTHO05D006728 1.0e-10 69.7 40 72.5
PGR119G1481 Punica granatum HOM05D002569 ORTHO05D006728 1.4e-10 69.3 40 72.5
Cpa.g.sc84.73 Carica papaya HOM05D002569 ORTHO05D006728 1.8e-10 68.9 40 70.0
MBI19_g25424_MAGBIO Magnolia biondii HOM05D002569 ORTHO05D006728 1.8e-10 68.9 40 70.0
Actinidia16317 Actinidia chinensis HOM05D002569 ORTHO05D006728 2.3e-10 68.6 40 70.0
Sc09g0000580 Simmondsia chinensis HOM05D002569 ORTHO05D006728 2.3e-10 68.6 40 67.5
Nn7g36161 Nelumbo nucifera HOM05D002569 ORTHO05D006728 3.9e-10 67.8 40 70.0
Hund07528 Selenicereus undatus HOM05D002569 ORTHO05D006728 3.9e-10 67.8 40 70.0
Solyc10g079290.2 Solanum lycopersicum HOM05D002569 ORTHO05D006728 3.9e-10 67.8 40 67.5
Sopen10g029940 Solanum pennellii HOM05D002569 ORTHO05D006728 3.9e-10 67.8 40 67.5
vmacro04197 Vaccinium macrocarpon HOM05D002569 ORTHO05D006728 5.1e-10 67.4 40 70.0
ATR0605G270 Amborella trichopoda HOM05D002569 ORTHO05D006728 6.7e-10 67.0 40 70.0
CAN.G288.3 Capsicum annuum HOM05D002569 ORTHO05D006728 8.8e-10 66.6 40 67.5
CiPaw.13G163000 Carya illinoinensis HOM05D002569 ORTHO05D006728 8.8e-10 66.6 40 67.5
CDE05G2349 Ceratophyllum demersum HOM05D002569 ORTHO05D006728 1.1e-09 66.2 40 67.5
DCAR_018962 Daucus carota HOM05D002569 ORTHO05D006728 1.1e-09 66.2 40 72.5
arahy.Tifrunner.gnm1.ann1.24VX5E Arachis hypogaea HOM05D002569 ORTHO05D006728 1.5e-09 65.9 40 65.0
arahy.Tifrunner.gnm1.ann1.89IDD9 Arachis hypogaea HOM05D002569 ORTHO05D006728 1.5e-09 65.9 40 65.0
arahy.Tifrunner.gnm1.ann1.IW7M0D Arachis hypogaea HOM05D002569 ORTHO05D006728 1.5e-09 65.9 40 65.0
arahy.Tifrunner.gnm1.ann1.VAJP8X Arachis hypogaea HOM05D002569 ORTHO05D006728 1.5e-09 65.9 40 65.0
Lj1A347T9 Lonicera japonica HOM05D002569 ORTHO05D006728 1.5e-09 65.9 40 70.0
Nitab4.5_0002026g0040 Nicotiana tabacum HOM05D002569 ORTHO05D006728 1.5e-09 65.9 40 70.0
Gohir.A05G068400 Gossypium hirsutum HOM05D002569 ORTHO05D006728 2.0e-09 65.5 40 65.0
Lalb_Chr14g0372161 Lupinus albus HOM05D002569 ORTHO05D006728 2.0e-09 65.5 40 65.0
Nitab4.5_0000492g0100 Nicotiana tabacum HOM05D002569 ORTHO05D006728 2.0e-09 65.5 40 67.5
Thecc.09G228700 Theobroma cacao HOM05D002569 ORTHO05D006728 2.0e-09 65.5 40 65.0
COL.COLO4_24854 Corchorus olitorius HOM05D002569 ORTHO05D006728 3.3e-09 64.7 40 62.5
SalBow8G4903 Salvia bowleyana HOM05D002569 ORTHO05D006728 3.3e-09 64.7 40 62.5
GSVIVG01025300001 Vitis vinifera HOM05D002569 ORTHO05D006728 3.3e-09 64.7 40 67.5
Dinv22194 Davidia involucrata HOM05D002569 ORTHO05D006728 4.3e-09 64.3 40 65.0
Duzib150G1640 Durio zibethinus HOM05D002569 ORTHO05D006728 5.7e-09 63.9 40 62.5
Gorai.004G019000 Gossypium raimondii HOM05D002569 ORTHO05D006728 5.7e-09 63.9 41 61.0
Gorai.009G072400 Gossypium raimondii HOM05D002569 ORTHO05D006728 5.7e-09 63.9 40 62.5
Potri.001G019000 Populus trichocarpa HOM05D002569 ORTHO05D006728 5.7e-09 63.9 40 62.5
Eucgr.J00787 Eucalyptus grandis HOM05D002569 ORTHO05D006728 7.4e-09 63.5 40 65.0
THA.LOC104799090 Tarenaya hassleriana HOM05D002569 ORTHO05D006728 7.4e-09 63.5 40 60.0
Lj3g0027520 Lotus japonicus HOM05D002569 ORTHO05D006728 9.7e-09 63.2 40 60.0
Haze_23104 Corylus avellana HOM05D002569 ORTHO05D006728 1.3e-08 62.8 40 62.5
Haze_23108 Corylus avellana HOM05D002569 ORTHO05D006728 1.3e-08 62.8 40 62.5
HPP92_006144 Vanilla planifolia HOM05D002569 ORTHO05D006728 1.3e-08 62.8 40 67.5
Cfa009745 Carpinus fangiana HOM05D002569 ORTHO05D006728 1.7e-08 62.4 40 62.5
CsaV3_4G024160 Cucumis sativus L. HOM05D002569 ORTHO05D006728 1.7e-08 62.4 40 65.0
Potri.003G204900 Populus trichocarpa HOM05D002569 ORTHO05D006728 1.7e-08 62.4 40 62.5
Duzib170G0706 Durio zibethinus HOM05D002569 ORTHO05D006728 2.2e-08 62.0 40 62.5
CANSAT54G1339 Cannabis sativa HOM05D002569 ORTHO05D006728 2.8e-08 61.6 40 60.0
Glyma.13G340700 Glycine max HOM05D002569 ORTHO05D006728 2.8e-08 61.6 40 62.5
Gohir.D08G023700 Gossypium hirsutum HOM05D002569 ORTHO05D006728 2.8e-08 61.6 41 58.5
VMungo1080G1486 Vigna mungo HOM05D002569 ORTHO05D006728 2.8e-08 61.6 40 62.5
Aa31LG1G18950 Aethionema arabicum HOM05D002569 ORTHO05D006728 3.7e-08 61.2 40 57.5
AL6G31130 Arabidopsis lyrata HOM05D002569 ORTHO05D006728 3.7e-08 61.2 40 55.0
A10p20090 Brassica napus HOM05D002569 ORTHO05D006728 3.7e-08 61.2 40 55.0
C09p56560 Brassica napus HOM05D002569 ORTHO05D006728 3.7e-08 61.2 40 55.0
BolC9t58521H Brassica oleracea HOM05D002569 ORTHO05D006728 3.7e-08 61.2 40 55.0
BraA10t44083Z Brassica rapa HOM05D002569 ORTHO05D006728 3.7e-08 61.2 40 55.0
Carub.0006s1797 Capsella rubella HOM05D002569 ORTHO05D006728 3.7e-08 61.2 40 55.0
Ca_01289_v3 Cicer arietinum L. HOM05D002569 ORTHO05D006728 3.7e-08 61.2 40 60.0
Ciclev10014959m.g Citrus clementina HOM05D002569 ORTHO05D006728 3.7e-08 61.2 40 65.0
Thhalv10012770m.g Eutrema salsugineum HOM05D002569 ORTHO05D006728 3.7e-08 61.2 40 55.0
Os02g0196300 Oryza sativa ssp. japonica HOM05D002569 ORTHO05D006728 3.7e-08 61.2 40 65.0
Sp6g24770 Schrenkiella parvula HOM05D002569 ORTHO05D006728 3.7e-08 61.2 40 55.0
Aqoxy7G03862 Aquilegia oxysepala HOM05D002569 ORTHO05D006728 4.8e-08 60.8 40 65.0
Glyma.15G033700 Glycine max HOM05D002569 ORTHO05D006728 4.8e-08 60.8 40 60.0
AT5G19620 Arabidopsis thaliana HOM05D002569 ORTHO05D006728 6.3e-08 60.5 40 55.0
CARHR193290 Cardamine hirsuta HOM05D002569 ORTHO05D006728 6.3e-08 60.5 40 55.0
Sed0019540 Sechium edule HOM05D002569 ORTHO05D006728 6.3e-08 60.5 40 62.5
MELO3C014605.2 Cucumis melo HOM05D002569 ORTHO05D006728 8.2e-08 60.1 40 62.5
Phvul.L010043 Phaseolus vulgaris HOM05D002569 ORTHO05D006728 1.1e-07 59.7 40 60.0
Gohir.A08G013300 Gossypium hirsutum HOM05D002569 ORTHO05D006728 1.4e-07 59.3 40 57.5
Medtr2g098110 Medicago truncatula HOM05D002569 ORTHO05D006728 1.4e-07 59.3 40 57.5
Mapoly0001s0065 Marchantia polymorpha HOM05D002569 ORTHO05D006728 1.8e-07 58.9 55 45.5
QL01p005206 Quercus lobata HOM05D002569 ORTHO05D006728 1.8e-07 58.9 40 57.5
BcaC04g24225 Brassica carinata HOM05D002569 ORTHO05D006728 3.1e-07 58.2 40 52.5
FAN11G1818 Fragaria x ananassa HOM05D002569 ORTHO05D006728 3.1e-07 58.2 40 52.5
FAN16G0653 Fragaria x ananassa HOM05D002569 ORTHO05D006728 3.1e-07 58.2 40 52.5
FAN17G2435 Fragaria x ananassa HOM05D002569 ORTHO05D006728 3.1e-07 58.2 40 52.5
FAN21G0039 Fragaria x ananassa HOM05D002569 ORTHO05D006728 3.1e-07 58.2 40 52.5
Prupe.6G023900 Prunus persica HOM05D002569 ORTHO05D006728 3.1e-07 58.2 40 55.0
RcHm_v2.0_Chr5g0077091 Rosa chinensis HOM05D002569 ORTHO05D006728 3.1e-07 58.2 40 52.5
TPR.G6861 Trifolium pratense HOM05D002569 ORTHO05D006728 4.1e-07 57.8 40 55.0
MD03G1024500 Malus domestica HOM05D002569 ORTHO05D006728 5.3e-07 57.4 40 55.0
PSO384G3146 Papaver somniferum HOM05D002569 ORTHO05D006728 5.3e-07 57.4 40 57.5
Psat5g287000 Pisum sativum HOM05D002569 ORTHO05D006728 5.3e-07 57.4 40 55.0
Rhsim13G0223300 Rhododendron simsii HOM05D002569 ORTHO05D006728 5.3e-07 57.4 62 46.8
FAN25G0456 Fragaria x ananassa HOM05D002569 ORTHO05D006728 1.2e-06 56.2 40 50.0
MD11G1029600 Malus domestica HOM05D002569 ORTHO05D006728 1.2e-06 56.2 40 52.5
AagrBONN_evm.TU.Sc2ySwM_117.1129 Anthoceros agrestis HOM05D002569 ORTHO05D006728 2.6e-06 55.1 40 55.0
Zm00001eb236320 Zea mays HOM05D002569 ORTHO05D006728 2.6e-06 55.1 40 60.0
Sabra03G0151500 Salix brachista HOM05D002569 ORTHO05D006728 5.9e-06 53.9 29 75.9


User provided reference genes

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