Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0016151 Helianthus annuus HOM05D006848 ORTHO05D008445 1.7e-121 439.5 245 100.0
ECA248G3622 Erigeron canadensis HOM05D006848 ORTHO05D008445 5.1e-102 374.8 245 84.1
Lsat_1_v5_gn_1_107841 Lactuca sativa HOM05D006848 ORTHO05D008445 2.6e-98 362.5 247 84.2
Peaxi162Scf00428g00063 Petunia axillaris HOM05D006848 ORTHO05D008445 3.7e-84 315.5 190 82.6
CANSAT80G2127 Cannabis sativa HOM05D006848 ORTHO05D008445 3.1e-83 312.4 243 68.3
Peaxi162Scf00347g00071 Petunia axillaris HOM05D006848 ORTHO05D008445 3.1e-83 312.4 245 72.2
FvH4_7g00900 Fragaria vesca HOM05D006848 ORTHO05D008445 7.7e-82 307.8 219 73.5
COL.COLO4_23924 Corchorus olitorius HOM05D006848 ORTHO05D008445 1.7e-81 306.6 247 66.8
Sed0006624 Sechium edule HOM05D006848 ORTHO05D008445 2.2e-81 306.2 248 65.3
CAN.G170.111 Capsicum annuum HOM05D006848 ORTHO05D008445 3.8e-81 305.4 219 72.6
Gohir.D08G063100 Gossypium hirsutum HOM05D006848 ORTHO05D008445 3.8e-81 305.4 217 72.8
Gorai.004G065300 Gossypium raimondii HOM05D006848 ORTHO05D008445 3.8e-81 305.4 217 72.8
Rhsim07G0054800 Rhododendron simsii HOM05D006848 ORTHO05D008445 1.9e-80 303.1 248 69.0
PGSC0003DMG400006872 Solanum tuberosum HOM05D006848 ORTHO05D008445 2.5e-80 302.8 245 68.6
TWI53G1868 Tripterygium wilfordii HOM05D006848 ORTHO05D008445 2.5e-80 302.8 244 66.0
Oeu036185.1 Olea europaea HOM05D006848 ORTHO05D008445 3.2e-80 302.4 245 72.2
Sabra09G0046200 Salix brachista HOM05D006848 ORTHO05D008445 5.5e-80 301.6 219 72.1
Haze_03213 Corylus avellana HOM05D006848 ORTHO05D008445 7.2e-80 301.2 247 72.1
Duzib138G1675 Durio zibethinus HOM05D006848 ORTHO05D008445 9.4e-80 300.8 218 72.5
Thecc.01G412000 Theobroma cacao HOM05D006848 ORTHO05D008445 1.2e-79 300.4 201 75.1
Gohir.A08G053600 Gossypium hirsutum HOM05D006848 ORTHO05D008445 1.6e-79 300.1 217 71.9
PGR031G3843 Punica granatum HOM05D006848 ORTHO05D008445 1.6e-79 300.1 247 69.6
Ciclev10032624m.g Citrus clementina HOM05D006848 ORTHO05D008445 2.1e-79 299.7 217 71.4
Potri.009G062500 Populus trichocarpa HOM05D006848 ORTHO05D008445 2.1e-79 299.7 219 71.2
FAN10G1997 Fragaria x ananassa HOM05D006848 ORTHO05D008445 2.7e-79 299.3 225 71.6
Eucgr.G03390 Eucalyptus grandis HOM05D006848 ORTHO05D008445 3.6e-79 298.9 248 64.5
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 4.7e-79 298.5 187 79.7
CiPaw.13G004400 Carya illinoinensis HOM05D006848 ORTHO05D008445 6.1e-79 298.1 184 81.0
Migut.B01319 Erythranthe guttata HOM05D006848 ORTHO05D008445 6.1e-79 298.1 249 68.3
Nitab4.5_0000634g0080 Nicotiana tabacum HOM05D006848 ORTHO05D008445 6.1e-79 298.1 217 71.4
Nitab4.5_0002477g0050 Nicotiana tabacum HOM05D006848 ORTHO05D008445 6.1e-79 298.1 217 71.4
Cpa.g.sc386.5 Carica papaya HOM05D006848 ORTHO05D008445 7.9e-79 297.7 217 72.4
DCAR_029663 Daucus carota HOM05D006848 ORTHO05D008445 1.4e-78 297.0 245 69.4
MD07G1008600 Malus domestica HOM05D006848 ORTHO05D008445 3.0e-78 295.8 250 70.4
Aqoxy3G03705 Aquilegia oxysepala HOM05D006848 ORTHO05D008445 3.9e-78 295.4 200 75.0
Glyma.15G273300 Glycine max HOM05D006848 ORTHO05D008445 5.2e-78 295.0 217 70.5
PSO384G0049 Papaver somniferum HOM05D006848 ORTHO05D008445 6.7e-78 294.7 192 76.6
Glyma.08G154300 Glycine max HOM05D006848 ORTHO05D008445 1.1e-77 293.9 199 74.4
VMungo1080G1360 Vigna mungo HOM05D006848 ORTHO05D008445 2.0e-77 293.1 213 70.4
Lalb_Chr01g0015361 Lupinus albus HOM05D006848 ORTHO05D008445 2.6e-77 292.7 215 69.8
ClCG09G004240 Citrullus lanatus HOM05D006848 ORTHO05D008445 3.3e-77 292.4 251 64.1
Atru.chr11.2648 Acer truncatum HOM05D006848 ORTHO05D008445 5.7e-77 291.6 244 67.6
THA.LOC104819691 Tarenaya hassleriana HOM05D006848 ORTHO05D008445 5.7e-77 291.6 194 72.7
EL10Ac2g03652 Beta vulgaris HOM05D006848 ORTHO05D008445 9.7e-77 290.8 249 65.1
Eucgr.H02489 Eucalyptus grandis HOM05D006848 ORTHO05D008445 9.7e-77 290.8 184 76.6
TWI09G1547 Tripterygium wilfordii HOM05D006848 ORTHO05D008445 9.7e-77 290.8 199 72.4
PSO135G0340 Papaver somniferum HOM05D006848 ORTHO05D008445 1.7e-76 290.0 205 71.2
TPR.G12217 Trifolium pratense HOM05D006848 ORTHO05D008445 1.7e-76 290.0 204 72.5
vmacro13656 Vaccinium macrocarpon HOM05D006848 ORTHO05D008445 1.7e-76 290.0 241 66.0
Sopen01g034120 Solanum pennellii HOM05D006848 ORTHO05D008445 2.2e-76 289.7 180 78.3
Medtr3g028150 Medicago truncatula HOM05D006848 ORTHO05D008445 3.7e-76 288.9 177 80.8
CsaV3_7G031150 Cucumis sativus L. HOM05D006848 ORTHO05D008445 8.2e-76 287.7 250 62.8
MBI01_g27616_MAGBIO Magnolia biondii HOM05D006848 ORTHO05D008445 8.2e-76 287.7 244 64.8
Ca_14368_v3 Cicer arietinum L. HOM05D006848 ORTHO05D008445 1.1e-75 287.3 200 74.5
Sc10g0000020 Simmondsia chinensis HOM05D006848 ORTHO05D008445 1.4e-75 287.0 184 76.6
Carub.0005s3015 Capsella rubella HOM05D006848 ORTHO05D008445 1.8e-75 286.6 219 68.0
SalBow5G3403 Salvia bowleyana HOM05D006848 ORTHO05D008445 3.1e-75 285.8 243 62.1
AL5G46400 Arabidopsis lyrata HOM05D006848 ORTHO05D008445 4.1e-75 285.4 197 71.6
MELO3C023542.2 Cucumis melo HOM05D006848 ORTHO05D008445 4.1e-75 285.4 183 74.9
Lj7A569T67 Lonicera japonica HOM05D006848 ORTHO05D008445 4.1e-75 285.4 172 80.2
Cc02_g27800 Coffea canephora HOM05D006848 ORTHO05D008445 5.3e-75 285.0 177 77.4
Hma1.2p1_0312F.1_g121500 Hydrangea macrophylla HOM05D006848 ORTHO05D008445 1.2e-74 283.9 247 65.6
QL04p007215 Quercus lobata HOM05D006848 ORTHO05D008445 1.2e-74 283.9 244 65.2
TAR623G0130 Trochodendron aralioides HOM05D006848 ORTHO05D008445 1.2e-74 283.9 173 79.2
Psat5g204320 Pisum sativum HOM05D006848 ORTHO05D008445 2.0e-74 283.1 171 77.8
Solyc01g087040.2 Solanum lycopersicum HOM05D006848 ORTHO05D008445 2.6e-74 282.7 245 65.3
CARHR291430 Cardamine hirsuta HOM05D006848 ORTHO05D008445 5.9e-74 281.6 219 67.6
BcaB01g02988 Brassica carinata HOM05D006848 ORTHO05D008445 1.3e-73 280.4 200 72.5
TAR623G0094 Trochodendron aralioides HOM05D006848 ORTHO05D008445 1.3e-73 280.4 253 62.5
A03p27190 Brassica napus HOM05D006848 ORTHO05D008445 1.7e-73 280.0 201 71.6
BraA03t11932Z Brassica rapa HOM05D006848 ORTHO05D008445 1.7e-73 280.0 201 71.6
Nn113s43373 Nelumbo nucifera HOM05D006848 ORTHO05D008445 2.2e-73 279.6 174 78.7
Nn2g15435 Nelumbo nucifera HOM05D006848 ORTHO05D008445 2.2e-73 279.6 174 78.7
MD02G1313800 Malus domestica HOM05D006848 ORTHO05D008445 3.8e-73 278.9 249 61.4
BcaC01g04883 Brassica carinata HOM05D006848 ORTHO05D008445 8.5e-73 277.7 225 65.8
BolC3t15604H Brassica oleracea HOM05D006848 ORTHO05D008445 1.9e-72 276.6 225 65.3
CDE05G1882 Ceratophyllum demersum HOM05D006848 ORTHO05D008445 2.5e-72 276.2 214 66.4
Phvul.005G020200 Phaseolus vulgaris HOM05D006848 ORTHO05D008445 9.4e-72 274.2 215 66.5
FAN01G1688 Fragaria x ananassa HOM05D006848 ORTHO05D008445 1.2e-71 273.9 219 68.0
RcHm_v2.0_Chr3g0473601 Rosa chinensis HOM05D006848 ORTHO05D008445 1.6e-71 273.5 202 74.8
Prupe.2G012000 Prunus persica HOM05D006848 ORTHO05D008445 1.0e-70 270.8 182 73.6
ATR0605G006 Amborella trichopoda HOM05D006848 ORTHO05D008445 3.0e-70 269.2 198 69.7
SEGI_25651 Sequoiadendron giganteum HOM05D006848 ORTHO05D008445 2.2e-68 263.1 221 64.7
FAN06G1876 Fragaria x ananassa HOM05D006848 ORTHO05D008445 2.8e-68 262.7 213 67.6
SGA_v2.0_scaffold167G38443 Striga asiatica HOM05D006848 ORTHO05D008445 3.7e-68 262.3 245 61.2
arahy.Tifrunner.gnm1.ann1.27LE56 Arachis hypogaea HOM05D006848 ORTHO05D008445 4.8e-68 261.9 219 63.0
arahy.Tifrunner.gnm1.ann1.9ZN1DC Arachis hypogaea HOM05D006848 ORTHO05D008445 9.1e-67 257.7 199 66.3
AUR62009377 Chenopodium quinoa HOM05D006848 ORTHO05D008445 9.1e-67 257.7 172 72.1
Zm00001eb034740 Zea mays HOM05D006848 ORTHO05D008445 2.0e-66 256.5 176 72.2
HPP92_007477 Vanilla planifolia HOM05D006848 ORTHO05D008445 3.8e-65 252.3 189 66.7
Aa31LG10G17430 Aethionema arabicum HOM05D006848 ORTHO05D008445 1.5e-64 250.4 150 78.0
Sp1g00010 Schrenkiella parvula HOM05D006848 ORTHO05D008445 1.5e-64 250.4 172 70.9
Sp5g00040 Schrenkiella parvula HOM05D006848 ORTHO05D008445 1.5e-64 250.4 172 70.9
AagrBONN_evm.TU.Sc2ySwM_228.3199 Anthoceros agrestis HOM05D006848 ORTHO05D008445 3.2e-64 249.2 191 63.9
C03p32680 Brassica napus HOM05D006848 ORTHO05D008445 9.4e-64 247.7 205 66.3
Thhalv10006361m.g Eutrema salsugineum HOM05D006848 ORTHO05D008445 3.6e-63 245.7 194 63.9
AUR62023058 Chenopodium quinoa HOM05D006848 ORTHO05D008445 1.4e-62 243.8 255 56.1
Lj1g0010524 Lotus japonicus HOM05D006848 ORTHO05D008445 3.4e-61 239.2 173 69.4
SMO217G0004 Selaginella moellendorffii HOM05D006848 ORTHO05D008445 1.7e-60 236.9 182 61.0
SMO356G0122 Selaginella moellendorffii HOM05D006848 ORTHO05D008445 1.7e-60 236.9 182 61.0
Manes.10G144600 Manihot esculenta HOM05D006848 ORTHO05D008445 4.8e-60 235.3 162 76.5
Pp3c4_11800 Physcomitrium patens HOM05D006848 ORTHO05D008445 7.0e-59 231.5 198 57.6
AT3G63540 Arabidopsis thaliana HOM05D006848 ORTHO05D008445 1.9e-56 223.4 138 75.4
Mapoly0075s0034 Marchantia polymorpha HOM05D006848 ORTHO05D008445 1.9e-56 223.4 204 55.9
Os08g0504500 Oryza sativa ssp. japonica HOM05D006848 ORTHO05D008445 5.5e-56 221.9 169 63.9
Dinv43453 Davidia involucrata HOM05D006848 ORTHO05D008445 1.0e-54 217.6 198 69.2
CBR_g23941 Chara braunii HOM05D006848 ORTHO05D008445 8.8e-54 214.5 170 58.8
Actinidia36713 Actinidia chinensis HOM05D006848 ORTHO05D008445 3.7e-52 209.1 132 78.0
RcHm_v2.0_Chr1g0315791 Rosa chinensis HOM05D006848 ORTHO05D008445 2.2e-44 183.3 120 73.3
CDE05G3657 Ceratophyllum demersum HOM05D000031 ORTHO05D008445 1.8e-43 180.3 124 70.2
Hma1.2p1_0137F.1_g062450 Hydrangea macrophylla HOM05D006848 ORTHO05D008445 7.8e-42 174.9 124 71.8
Actinidia24670 Actinidia chinensis HOM05D006848 ORTHO05D008445 2.6e-37 159.8 105 78.1
MCO14G442 Micromonas commoda HOM05D006848 ORTHO05D008445 8.3e-28 128.3 177 42.9
SEGI_20764 Sequoiadendron giganteum HOM05D006848 ORTHO05D008445 1.2e-23 114.4 113 61.1
Cre03.g198850 Chlamydomonas reinhardtii HOM05D006848 ORTHO05D008445 1.5e-21 107.5 195 32.8
PRCOL_00004469 Prasinoderma coloniale HOM05D006848 ORTHO05D008445 1.6e-15 87.4 181 33.7
A04p00030 Brassica napus HOM05D006848 ORTHO05D008445 3.9e-09 66.2 50 60.0
HanXRQChr05g0160801 Helianthus annuus HOM05D006773 ORTHO05D008775 1.9e-08 63.9 151 27.2
DCAR_031498 Daucus carota HOM05D006773 ORTHO05D008775 5.6e-08 62.4 152 28.9
Hund17393 Selenicereus undatus HOM05D006773 ORTHO05D008775 1.3e-07 61.2 150 28.7
MSTRG.22383 Avicennia marina HOM05D006773 ORTHO05D008775 1.6e-07 60.8 152 27.0
MBI06_g35966_MAGBIO Magnolia biondii HOM05D006773 ORTHO05D008775 1.6e-07 60.8 152 29.6
ECA246G0400 Erigeron canadensis HOM05D006773 ORTHO05D005980 2.1e-07 60.5 151 25.8
unitig_52.g17539 Utricularia gibba HOM05D006773 ORTHO05D008775 2.1e-07 60.5 152 28.3
MBI06_g41413_MAGBIO Magnolia biondii HOM05D006773 ORTHO05D008775 2.8e-07 60.1 152 29.6
Ah.16g108660 Amaranthus hybridus HOM05D006773 ORTHO05D008775 4.8e-07 59.3 152 26.3
Lsat_1_v5_gn_6_96860 Lactuca sativa HOM05D006773 ORTHO05D008775 4.8e-07 59.3 152 25.0
Nn5g28592 Nelumbo nucifera HOM05D006773 ORTHO05D008775 4.8e-07 59.3 150 29.3
Lj7C363G2 Lonicera japonica HOM05D006773 ORTHO05D008775 6.2e-07 58.9 153 26.8
CiPaw.15G022300 Carya illinoinensis HOM05D006773 ORTHO05D008775 8.1e-07 58.5 147 28.6
Oeu025718.1 Olea europaea HOM05D006773 ORTHO05D008775 8.1e-07 58.5 152 26.3
Thecc.08G143200 Theobroma cacao HOM05D006773 ORTHO05D008775 8.1e-07 58.5 151 27.2
Duzib093G1219 Durio zibethinus HOM05D006773 ORTHO05D008775 1.4e-06 57.8 151 28.5
Sc20g0003340 Simmondsia chinensis HOM05D006773 ORTHO05D008775 1.4e-06 57.8 152 26.3
Dinv25798 Davidia involucrata HOM05D006773 ORTHO05D008775 1.8e-06 57.4 151 27.2
Cfa018374 Carpinus fangiana HOM05D006773 ORTHO05D008775 2.4e-06 57.0 151 27.8
Ciclev10002228m.g Citrus clementina HOM05D006773 ORTHO05D008775 3.1e-06 56.6 151 27.2
Migut.N03240 Erythranthe guttata HOM05D006773 ORTHO05D008775 3.1e-06 56.6 152 25.7
Cc10_g12990 Coffea canephora HOM05D006773 ORTHO05D008775 4.0e-06 56.2 152 25.7
QL09p028661 Quercus lobata HOM05D006773 ORTHO05D008775 4.0e-06 56.2 147 27.9
arahy.Tifrunner.gnm1.ann1.61R3GI Arachis hypogaea HOM05D006773 ORTHO05D008775 5.3e-06 55.8 151 28.5
Eucgr.F02746 Eucalyptus grandis HOM05D006773 ORTHO05D008775 5.3e-06 55.8 152 27.0
MD10G1012400 Malus domestica HOM05D006773 ORTHO05D008775 5.3e-06 55.8 153 26.1
Nitab4.5_0004095g0010 Nicotiana tabacum HOM05D006773 ORTHO05D008775 5.3e-06 55.8 151 26.5
GSVIVG01010018001 Vitis vinifera HOM05D006773 ORTHO05D008775 5.3e-06 55.8 153 28.1
arahy.Tifrunner.gnm1.ann1.85NLUF Arachis hypogaea HOM05D006773 ORTHO05D008775 6.9e-06 55.5 151 28.5
Solyc04g064670.3 Solanum lycopersicum HOM05D006773 ORTHO05D008775 6.9e-06 55.5 152 24.3
Sopen04g026630 Solanum pennellii HOM05D006773 ORTHO05D008775 6.9e-06 55.5 152 24.3
PGSC0003DMG401024815 Solanum tuberosum HOM05D006773 ORTHO05D008775 6.9e-06 55.5 152 24.3
Atru.chr13.1690 Acer truncatum HOM05D006773 ORTHO05D008775 9.0e-06 55.1 151 27.2
Nitab4.5_0000445g0090 Nicotiana tabacum HOM05D006773 ORTHO05D008775 9.0e-06 55.1 151 25.8


User provided reference genes

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