Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0016141 Helianthus annuus HOM05D003920 ORTHO05D004877 2.5e-190 668.7 355 100.0
ECA248G0446 Erigeron canadensis HOM05D003920 ORTHO05D004877 7.5e-171 604.0 355 85.4
Dinv43454 Davidia involucrata HOM05D003920 ORTHO05D004877 1.2e-144 516.9 360 73.6
Lsat_1_v5_gn_1_107981 Lactuca sativa HOM05D003920 ORTHO05D004877 1.6e-144 516.5 326 80.1
FAN06G2354 Fragaria x ananassa HOM05D003920 ORTHO05D004877 5.3e-140 501.5 361 72.0
FvH4_7g00890 Fragaria vesca HOM05D003920 ORTHO05D004877 9.0e-140 500.7 361 71.7
Nn2g15431 Nelumbo nucifera HOM05D003920 ORTHO05D004877 9.9e-139 497.3 351 72.1
DCAR_003208 Daucus carota HOM05D003920 ORTHO05D004877 6.4e-138 494.6 357 71.7
Lalb_Chr01g0015291 Lupinus albus HOM05D003920 ORTHO05D004877 1.1e-137 493.8 355 70.4
Rhsim07G0054700 Rhododendron simsii HOM05D003920 ORTHO05D004877 5.4e-137 491.5 355 72.1
Manes.10G144700 Manihot esculenta HOM05D003920 ORTHO05D004877 9.3e-137 490.7 357 70.3
Psat5g204200 Pisum sativum HOM05D003920 ORTHO05D004877 3.5e-136 488.8 353 70.3
Medtr3g028190 Medicago truncatula HOM05D003920 ORTHO05D004877 4.6e-136 488.4 353 70.3
Phvul.005G019900 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 7.8e-136 487.6 361 69.5
Sabra09G0046300 Salix brachista HOM05D003920 ORTHO05D004877 7.8e-136 487.6 356 70.5
PSO339G5616 Papaver somniferum HOM05D003920 ORTHO05D004877 1.3e-135 486.9 362 69.3
Prupe.2G011700 Prunus persica HOM05D003920 ORTHO05D004877 2.3e-135 486.1 367 69.2
Glyma.15G272400 Glycine max HOM05D003920 ORTHO05D004877 3.9e-135 485.3 361 69.3
PSO384G3532 Papaver somniferum HOM05D003920 ORTHO05D004877 3.9e-135 485.3 362 69.3
VMungo1080G0709 Vigna mungo HOM05D003920 ORTHO05D004877 5.1e-135 485.0 361 68.1
Peaxi162Scf00428g00618 Petunia axillaris HOM05D003920 ORTHO05D004877 6.6e-135 484.6 360 70.3
Lj3g0003225 Lotus japonicus HOM05D003920 ORTHO05D004877 1.5e-134 483.4 357 69.2
MD02G1313900 Malus domestica HOM05D003920 ORTHO05D004877 1.5e-134 483.4 361 71.2
Nn7g36164 Nelumbo nucifera HOM05D003920 ORTHO05D004877 5.6e-134 481.5 351 70.7
Ca_27172_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 1.3e-133 480.3 353 70.0
Potri.001G268200 Populus trichocarpa HOM05D003920 ORTHO05D004877 1.3e-133 480.3 358 69.3
Peaxi162Scf00407g00639 Petunia axillaris HOM05D003920 ORTHO05D004877 1.6e-133 479.9 362 67.1
Potri.009G062600 Populus trichocarpa HOM05D003920 ORTHO05D004877 1.6e-133 479.9 359 70.2
Aqoxy2G00138 Aquilegia oxysepala HOM05D003920 ORTHO05D004877 2.8e-133 479.2 360 68.9
Gohir.D08G038400 Gossypium hirsutum HOM05D003920 ORTHO05D004877 4.8e-133 478.4 363 69.7
Glyma.08G153800 Glycine max HOM05D003920 ORTHO05D004877 6.2e-133 478.0 361 68.4
Gorai.004G036900 Gossypium raimondii HOM05D003920 ORTHO05D004877 1.8e-132 476.5 362 69.6
Sabra16G0164300 Salix brachista HOM05D003920 ORTHO05D004877 1.8e-132 476.5 357 69.5
MD07G1008500 Malus domestica HOM05D003920 ORTHO05D004877 3.1e-132 475.7 360 70.0
TPR.G12140 Trifolium pratense HOM05D003920 ORTHO05D004877 9.0e-132 474.2 343 70.6
Gohir.A08G027700 Gossypium hirsutum HOM05D003920 ORTHO05D004877 2.0e-131 473.0 363 69.4
arahy.Tifrunner.gnm1.ann1.Z50281 Arachis hypogaea HOM05D003920 ORTHO05D004877 3.4e-131 472.2 356 69.7
Migut.N01471 Erythranthe guttata HOM05D003920 ORTHO05D004877 9.9e-131 470.7 348 69.8
Eucgr.J01264 Eucalyptus grandis HOM05D003920 ORTHO05D004877 1.3e-130 470.3 359 69.1
Nitab4.5_0000634g0100 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.9e-129 466.5 386 62.2
Solyc10g038000.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 1.9e-129 466.5 360 68.3
arahy.Tifrunner.gnm1.ann1.LBVL0K Arachis hypogaea HOM05D003920 ORTHO05D004877 3.2e-129 465.7 358 69.0
DCAR_022405 Daucus carota HOM05D003920 ORTHO05D004877 4.2e-129 465.3 359 67.7
Sopen10g011530 Solanum pennellii HOM05D003920 ORTHO05D004877 1.6e-128 463.4 360 67.5
CAN.G709.1 Capsicum annuum HOM05D003920 ORTHO05D004877 2.7e-128 462.6 353 67.7
Lj9C630T11 Lonicera japonica HOM05D003920 ORTHO05D004877 2.7e-128 462.6 352 63.4
Sed0011667 Sechium edule HOM05D003920 ORTHO05D004877 6.0e-128 461.5 359 67.7
TWI73G0359 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 7.9e-128 461.1 378 64.0
Nitab4.5_0011837g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.5e-126 456.8 370 64.9
SalBow5G4770 Salvia bowleyana HOM05D003920 ORTHO05D004877 1.9e-126 456.4 350 68.0
TAR369G0176 Trochodendron aralioides HOM05D003920 ORTHO05D004877 5.6e-126 454.9 362 66.0
Sopen01g034110 Solanum pennellii HOM05D003920 ORTHO05D004877 4.8e-125 451.8 359 65.2
vmacro13655 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 4.8e-125 451.8 422 59.0
Gorai.004G173300 Gossypium raimondii HOM05D003920 ORTHO05D004877 6.2e-125 451.4 354 66.7
CDE04G0006 Ceratophyllum demersum HOM05D003920 ORTHO05D004877 5.3e-124 448.4 348 66.1
CSS0030964 Camellia sinensis var. sinensis HOM05D003920 ORTHO05D004877 9.0e-124 447.6 324 70.4
MBI04_g13623_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D004877 9.0e-124 447.6 348 68.1
BcaC07g37767 Brassica carinata HOM05D003920 ORTHO05D004877 1.2e-123 447.2 345 65.8
BraA08t33064Z Brassica rapa HOM05D003920 ORTHO05D004877 1.2e-123 447.2 346 67.1
CARHR291420 Cardamine hirsuta HOM05D003920 ORTHO05D004877 2.0e-123 446.4 347 66.6
PGR044G2195 Punica granatum HOM05D003920 ORTHO05D004877 2.6e-123 446.0 362 63.8
Solyc01g087030.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 3.4e-123 445.7 359 65.2
QL04p007133 Quercus lobata HOM05D003920 ORTHO05D004877 5.8e-123 444.9 324 70.7
Thhalv10010518m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 9.9e-123 444.1 346 66.8
Ciclev10031666m.g Citrus clementina HOM05D003920 ORTHO05D004877 1.7e-122 443.4 312 66.0
MSTRG.5016 Avicennia marina HOM05D003920 ORTHO05D004877 4.9e-122 441.8 338 67.8
A08p28590 Brassica napus HOM05D003920 ORTHO05D004877 2.5e-121 439.5 346 65.3
AUR62009376 Chenopodium quinoa HOM05D003920 ORTHO05D004877 3.2e-121 439.1 335 66.6
RcHm_v2.0_Chr1g0315781 Rosa chinensis HOM05D003920 ORTHO05D004877 5.5e-121 438.3 325 69.8
COL.COLO4_23923 Corchorus olitorius HOM05D003920 ORTHO05D004877 1.6e-120 436.8 267 76.0
Sp1g00020 Schrenkiella parvula HOM05D003920 ORTHO05D004877 1.6e-120 436.8 353 64.3
unitig_85.g27216 Utricularia gibba HOM05D003920 ORTHO05D004877 1.6e-120 436.8 350 60.3
FAN03G2194 Fragaria x ananassa HOM05D003920 ORTHO05D004877 2.1e-120 436.4 325 69.5
EL10Ac2g04315 Beta vulgaris HOM05D003920 ORTHO05D004877 3.5e-120 435.6 332 67.2
ATR0605G260 Amborella trichopoda HOM05D003920 ORTHO05D004877 1.0e-119 434.1 342 67.0
SEGI_34678 Sequoiadendron giganteum HOM05D003920 ORTHO05D004877 1.8e-119 433.3 345 63.2
Zm00001eb381600 Zea mays HOM05D003920 ORTHO05D004877 5.1e-119 431.8 374 62.6
FAN01G3017 Fragaria x ananassa HOM05D003920 ORTHO05D004877 6.7e-119 431.4 325 68.9
Sc10g0000010 Simmondsia chinensis HOM05D003920 ORTHO05D004877 1.1e-118 430.6 348 65.2
THA.LOC104827426 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 1.5e-118 430.3 347 63.1
SGA_v2.0_scaffold167G38446 Striga asiatica HOM05D003920 ORTHO05D004877 1.3e-117 427.2 350 63.4
Haze_03212 Corylus avellana HOM05D003920 ORTHO05D004877 2.4e-116 422.9 324 67.9
Aa31LG10G17420 Aethionema arabicum HOM05D003920 ORTHO05D004877 9.0e-116 421.0 419 54.9
Sp3g06990 Schrenkiella parvula HOM05D003920 ORTHO05D004877 9.0e-116 421.0 348 62.6
HPP92_005768 Vanilla planifolia HOM05D003920 ORTHO05D004877 4.5e-115 418.7 368 60.9
Thhalv10021103m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 7.6e-115 417.9 345 62.6
Atru.chr11.2647 Acer truncatum HOM05D003920 ORTHO05D004877 1.0e-114 417.5 316 67.7
TAR633G1074 Trochodendron aralioides HOM05D003920 ORTHO05D004877 1.3e-114 417.2 335 60.3
AT3G08505 Arabidopsis thaliana HOM05D003920 ORTHO05D004877 6.5e-114 414.8 345 61.2
AL3G19480 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 1.1e-113 414.1 345 61.4
Cc02_g27790 Coffea canephora HOM05D003920 ORTHO05D004877 4.2e-113 412.1 331 66.5
THA.LOC104819067 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 1.6e-112 410.2 354 60.2
Thecc.01G412100 Theobroma cacao HOM05D003920 ORTHO05D004877 3.5e-112 409.1 324 68.2
Gohir.D08G166100 Gossypium hirsutum HOM05D003920 ORTHO05D004877 1.5e-110 403.7 270 70.4
Carub.0003s0765 Capsella rubella HOM05D003920 ORTHO05D004877 2.5e-110 402.9 347 60.5
CsaV3_7G031170 Cucumis sativus L. HOM05D003920 ORTHO05D004877 5.7e-110 401.7 318 68.2
CARHR082810 Cardamine hirsuta HOM05D003920 ORTHO05D004877 2.4e-108 396.4 345 58.3
BcaB03g11569 Brassica carinata HOM05D003920 ORTHO05D004877 4.1e-108 395.6 346 59.8
MELO3C023541.2 Cucumis melo HOM05D003920 ORTHO05D004877 4.1e-108 395.6 314 67.8
BcaB04g21254 Brassica carinata HOM05D003920 ORTHO05D004877 9.0e-108 394.4 345 60.9
BraA03t12740Z Brassica rapa HOM05D003920 ORTHO05D004877 4.5e-107 392.1 346 59.2
BraA01t04343Z Brassica rapa HOM05D003920 ORTHO05D004877 1.7e-106 390.2 345 58.8
MSTRG.20593 Avicennia marina HOM05D003920 ORTHO05D004877 2.2e-106 389.8 354 60.5
BolC3t16599H Brassica oleracea HOM05D003920 ORTHO05D004877 5.0e-106 388.7 346 59.5
BcaC09g47976 Brassica carinata HOM05D003920 ORTHO05D004877 1.4e-105 387.1 345 59.1
Carub.0005s3016 Capsella rubella HOM05D003920 ORTHO05D004877 1.4e-105 387.1 316 66.5
A03p35650 Brassica napus HOM05D003920 ORTHO05D004877 2.5e-105 386.3 334 60.2
BolC8t48154H Brassica oleracea HOM05D003920 ORTHO05D004877 1.2e-104 384.0 311 62.7
Thhalv10023829m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 1.2e-104 384.0 352 59.9
A08p10660 Brassica napus HOM05D003920 ORTHO05D004877 1.6e-104 383.6 311 63.7
BolC8t49780H Brassica oleracea HOM05D003920 ORTHO05D004877 2.7e-104 382.9 311 63.3
C03p43290 Brassica napus HOM05D003920 ORTHO05D004877 4.6e-104 382.1 334 60.2
BcaC01g04265 Brassica carinata HOM05D003920 ORTHO05D004877 3.0e-103 379.4 334 59.9
AL5G46410 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 6.7e-103 378.3 321 62.3
Manes.07G005000 Manihot esculenta HOM05D003920 ORTHO05D004877 1.4e-100 370.5 294 66.7
Pp3c5_25680 Physcomitrium patens HOM05D003920 ORTHO05D004877 3.1e-100 369.4 341 49.9
Hund03665 Selenicereus undatus HOM05D003920 ORTHO05D004877 1.7e-98 363.6 321 62.3
Mapoly0042s0020 Marchantia polymorpha HOM05D003920 ORTHO05D004877 3.6e-96 355.9 415 48.4
ClCG09G004250 Citrullus lanatus HOM05D003920 ORTHO05D004877 2.3e-95 353.2 212 77.4
AUR62023057 Chenopodium quinoa HOM05D003920 ORTHO05D004877 2.0e-94 350.1 288 65.3
Actinidia24671 Actinidia chinensis HOM05D003920 ORTHO05D004877 1.7e-93 347.1 271 63.1
Aa31LG5G18640 Aethionema arabicum HOM05D003920 ORTHO05D004877 5.3e-92 342.0 225 68.0
Nitab4.5_0004786g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 7.0e-92 341.7 340 58.2
TWI53G1741 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 2.6e-91 339.7 238 66.8
SGA_v2.0_scaffold24G10678 Striga asiatica HOM05D003920 ORTHO05D004877 1.7e-90 337.0 345 53.3
Gohir.A08G145200 Gossypium hirsutum HOM05D003920 ORTHO05D004877 3.2e-89 332.8 289 64.0
C08p21410 Brassica napus HOM05D003920 ORTHO05D004877 4.2e-89 332.4 200 70.0
Sp5g00030 Schrenkiella parvula HOM05D003920 ORTHO05D004877 5.5e-89 332.0 345 54.5
SMO203G0245 Selaginella moellendorffii HOM05D003920 ORTHO05D004877 4.7e-88 328.9 335 52.5
Actinidia31057 Actinidia chinensis HOM05D003920 ORTHO05D004877 2.3e-87 326.6 356 54.2
Lj7A569G59 Lonicera japonica HOM05D003920 ORTHO05D004877 2.0e-86 323.6 190 74.2
PGR044G2672 Punica granatum HOM05D003920 ORTHO05D004877 3.3e-86 322.8 335 53.4
vmacro08182 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 1.3e-85 320.9 300 59.7
Zm00001eb252860 Zea mays HOM05D003920 ORTHO05D004877 1.7e-85 320.5 323 49.8
BcaC07g39147 Brassica carinata HOM05D003920 ORTHO05D004877 6.3e-85 318.5 320 50.6
Nitab4.5_0001299g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.2e-83 314.3 328 51.2
Peaxi162Scf00148g00610 Petunia axillaris HOM05D003920 ORTHO05D004877 1.6e-83 313.9 317 51.4
Actinidia36714 Actinidia chinensis HOM05D003920 ORTHO05D004877 5.9e-83 312.0 346 48.8
Potri.004G134400 Populus trichocarpa HOM05D003920 ORTHO05D004877 1.7e-82 310.5 311 56.6
arahy.Tifrunner.gnm1.ann1.3CZ6TN Arachis hypogaea HOM05D003920 ORTHO05D004877 9.7e-78 294.7 318 53.8
Glyma.15G273000 Glycine max HOM05D003920 ORTHO05D004877 9.7e-78 294.7 318 52.8
arahy.Tifrunner.gnm1.ann1.NHZH5I Arachis hypogaea HOM05D003920 ORTHO05D004877 1.8e-76 290.4 315 54.0
VMungo1080G1751 Vigna mungo HOM05D003920 ORTHO05D004877 1.8e-76 290.4 317 53.6
Lalb_Chr20g0108061 Lupinus albus HOM05D003920 ORTHO05D004877 3.1e-76 289.7 315 52.1
Sabra04G0083700 Salix brachista HOM05D003920 ORTHO05D004877 7.0e-76 288.5 193 67.4
Glyma.08G154100 Glycine max HOM05D003920 ORTHO05D004877 2.0e-75 287.0 316 52.8
TPR.G12281 Trifolium pratense HOM05D003920 ORTHO05D004877 3.5e-75 286.2 317 53.3
Lalb_Chr01g0015331 Lupinus albus HOM05D003920 ORTHO05D004877 4.5e-75 285.8 314 51.3
Phvul.005G020000 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 1.0e-74 284.6 325 52.9
Medtr3g028170 Medicago truncatula HOM05D003920 ORTHO05D004877 1.3e-74 284.3 312 52.6
Lj3g0002246 Lotus japonicus HOM05D003920 ORTHO05D004877 8.5e-74 281.6 324 49.7
AagrBONN_evm.TU.Sc2ySwM_344.3645 Anthoceros agrestis HOM05D003920 ORTHO05D004877 9.4e-73 278.1 322 51.2
Ca_14370_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 2.1e-72 276.9 321 51.7
Psat5g204240 Pisum sativum HOM05D003920 ORTHO05D004877 4.4e-70 269.2 328 50.6
Nitab4.5_0000254g0170 Nicotiana tabacum HOM05D003920 ORTHO05D004877 3.6e-64 249.6 190 62.1
Cre06.g278136 Chlamydomonas reinhardtii HOM05D003920 ORTHO05D004877 6.1e-64 248.8 221 49.8
arahy.Tifrunner.gnm1.ann1.HIY6S0 Arachis hypogaea HOM05D003920 ORTHO05D004877 1.7e-58 230.7 318 45.0
arahy.Tifrunner.gnm1.ann1.YQ2HRW Arachis hypogaea HOM05D003920 ORTHO05D004877 1.2e-56 224.6 322 44.1
PRCOL_00005356 Prasinoderma coloniale HOM05D003920 ORTHO05D004877 8.9e-55 218.4 366 39.3
unitig_26.g8826 Utricularia gibba HOM05D003920 ORTHO05D004877 7.5e-54 215.3 304 45.7
GSVIVG01032073001 Vitis vinifera HOM05D003920 ORTHO05D004877 4.1e-52 209.5 109 85.3
Oeu039134.1 Olea europaea HOM05D003920 ORTHO05D004877 2.0e-51 207.2 110 85.5
Nitab4.5_0003190g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 2.5e-49 200.3 167 58.1
Phvul.011G110100 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 1.9e-41 174.1 93 80.6
TPR.G31394 Trifolium pratense HOM05D002628 ORTHO05D002785 2.5e-17 94.0 102 43.1
QL04p032014 Quercus lobata HOM05D003920 ORTHO05D004877 1.7e-13 81.3 38 86.8
QL04p032319 Quercus lobata HOM05D003920 ORTHO05D004877 3.8e-13 80.1 48 70.8
Cc02_g27780 Coffea canephora HOM05D003920 ORTHO05D017698 1.1e-12 78.6 43 86.0
BolC8t48153H Brassica oleracea HOM05D003920 ORTHO05D017698 1.2e-11 75.1 44 79.5
QL04p005704 Quercus lobata HOM05D003920 ORTHO05D004877 2.7e-11 73.9 66 62.1
BolC8t49779H Brassica oleracea HOM05D003920 ORTHO05D017698 1.3e-10 71.6 40 82.5
BraA08t34788Z Brassica rapa HOM05D003920 ORTHO05D017698 1.3e-10 71.6 40 82.5
MBI17_g06171_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D017698 1.8e-10 71.2 82 48.8
QL05p013448 Quercus lobata HOM05D001342 ORTHO05D017698 7.4e-09 65.9 45 71.1
C08p21400 Brassica napus HOM05D003920 ORTHO05D017698 1.4e-07 61.6 50 64.0
FAN10G2408 Fragaria x ananassa HOM05D003920 ORTHO05D017698 4.0e-07 60.1 48 64.6
arahy.Tifrunner.gnm1.ann1.RPY2B8 Arachis hypogaea HOM05D004014 ORTHO05D031593 5.3e-07 59.7 32 84.4
QL93p2025_0050 Quercus lobata HOM05D003920 ORTHO05D337666 1.2e-06 58.5 30 83.3


User provided reference genes

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