Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0015321 Helianthus annuus HOM05D002958 ORTHO05D029259 2.4e-53 211.8 103 100.0
HanXRQChr05g0153011 Helianthus annuus HOM05D002958 ORTHO05D029259 1.3e-46 189.5 103 93.2
ECA236G4656 Erigeron canadensis HOM05D002958 ORTHO05D003558 1.3e-30 136.3 154 55.2
HanXRQChr09g0270181 Helianthus annuus HOM05D002958 ORTHO05D003558 1.3e-30 136.3 154 55.2
Peaxi162Scf00069g01630 Petunia axillaris HOM05D002958 ORTHO05D003558 2.4e-29 132.1 133 58.6
Lsat_1_v5_gn_7_104120 Lactuca sativa HOM05D002958 ORTHO05D003558 1.2e-28 129.8 154 53.2
unitig_578.g15672 Utricularia gibba HOM05D002958 ORTHO05D003558 4.6e-28 127.9 154 50.0
Actinidia18769 Actinidia chinensis HOM05D002958 ORTHO05D003558 7.8e-28 127.1 154 52.6
Cc05_g11940 Coffea canephora HOM05D002958 ORTHO05D003558 1.7e-27 125.9 154 51.9
Oeu051071.1 Olea europaea HOM05D002958 ORTHO05D003558 1.7e-27 125.9 154 50.6
CSS0016776 Camellia sinensis var. sinensis HOM05D002958 ORTHO05D003558 3.0e-27 125.2 154 51.9
CSS0042025 Camellia sinensis var. sinensis HOM05D002958 ORTHO05D003558 3.0e-27 125.2 154 51.9
Haze_09438 Corylus avellana HOM05D002958 ORTHO05D003558 3.9e-27 124.8 155 51.0
Nitab4.5_0002383g0020 Nicotiana tabacum HOM05D002958 ORTHO05D003558 5.1e-27 124.4 154 50.0
SalBow7G2893 Salvia bowleyana HOM05D002958 ORTHO05D003558 5.1e-27 124.4 154 50.0
SGA_v2.0_scaffold73G24254 Striga asiatica HOM05D002958 ORTHO05D003558 5.1e-27 124.4 154 50.0
Oeu024907.2 Olea europaea HOM05D002958 ORTHO05D003558 6.6e-27 124.0 154 50.0
Hma1.2p1_0002F.1_g002040 Hydrangea macrophylla HOM05D002958 ORTHO05D003558 8.6e-27 123.6 153 49.0
Hma1.2p1_0458F.1_g157030 Hydrangea macrophylla HOM05D002958 ORTHO05D003558 8.6e-27 123.6 154 50.6
DCAR_020992 Daucus carota HOM05D002958 ORTHO05D003558 1.1e-26 123.2 154 50.0
CAN.G162.50 Capsicum annuum HOM05D002958 ORTHO05D003558 1.5e-26 122.9 154 50.0
Aqoxy4G00736 Aquilegia oxysepala HOM05D002958 ORTHO05D003558 1.9e-26 122.5 154 48.7
Sopen07g031230 Solanum pennellii HOM05D002958 ORTHO05D003558 1.9e-26 122.5 154 48.7
TAR627G0778 Trochodendron aralioides HOM05D002958 ORTHO05D003558 1.9e-26 122.5 154 50.0
TAR627G0954 Trochodendron aralioides HOM05D002958 ORTHO05D003558 1.9e-26 122.5 154 50.0
Nitab4.5_0000207g0070 Nicotiana tabacum HOM05D002958 ORTHO05D003558 2.5e-26 122.1 154 50.0
Rhsim04G0021800 Rhododendron simsii HOM05D002958 ORTHO05D003558 2.5e-26 122.1 154 49.4
Solyc07g063040.3 Solanum lycopersicum HOM05D002958 ORTHO05D003558 2.5e-26 122.1 154 48.7
PGSC0003DMG400012412 Solanum tuberosum HOM05D002958 ORTHO05D003558 2.5e-26 122.1 154 48.7
MSTRG.15237 Avicennia marina HOM05D002958 ORTHO05D003558 3.3e-26 121.7 154 49.4
MBI07_g30198_MAGBIO Magnolia biondii HOM05D002958 ORTHO05D003558 3.3e-26 121.7 154 50.0
Migut.M00798 Erythranthe guttata HOM05D002958 ORTHO05D003558 5.6e-26 120.9 154 48.1
PGR083G2586 Punica granatum HOM05D002958 ORTHO05D003558 5.6e-26 120.9 154 49.4
GSVIVG01014315001 Vitis vinifera HOM05D002958 ORTHO05D003558 7.3e-26 120.6 154 48.7
Ah.04g164780 Amaranthus hybridus HOM05D002958 ORTHO05D003558 9.5e-26 120.2 154 48.7
Nitab4.5_0001241g0080 Nicotiana tabacum HOM05D002958 ORTHO05D003558 1.2e-25 119.8 154 48.1
CSS0011837 Camellia sinensis var. sinensis HOM05D002958 ORTHO05D003558 1.6e-25 119.4 153 49.0
AUR62019437 Chenopodium quinoa HOM05D002958 ORTHO05D003558 2.1e-25 119.0 154 48.1
Nitab4.5_0001336g0100 Nicotiana tabacum HOM05D002958 ORTHO05D003558 2.1e-25 119.0 154 48.1
Nn8g39708 Nelumbo nucifera HOM05D002958 ORTHO05D003558 2.8e-25 118.6 154 48.7
QL08p022191 Quercus lobata HOM05D002958 ORTHO05D003558 2.8e-25 118.6 154 49.4
CiPaw.11G170500 Carya illinoinensis HOM05D002958 ORTHO05D003558 3.6e-25 118.2 154 48.7
Dinv20183 Davidia involucrata HOM05D002958 ORTHO05D003558 3.6e-25 118.2 154 47.4
Potri.001G399000 Populus trichocarpa HOM05D002958 ORTHO05D003558 3.6e-25 118.2 154 48.7
Dinv13400 Davidia involucrata HOM05D002958 ORTHO05D003558 4.7e-25 117.9 154 47.4
MD03G1229100 Malus domestica HOM05D002958 ORTHO05D003558 4.7e-25 117.9 154 48.1
Manes.03G109300 Manihot esculenta HOM05D002958 ORTHO05D003558 4.7e-25 117.9 154 48.1
ATR0737G076 Amborella trichopoda HOM05D002958 ORTHO05D003558 8.1e-25 117.1 154 48.7
Ciclev10007808m.g Citrus clementina HOM05D002958 ORTHO05D003558 8.1e-25 117.1 154 48.1
Cfa020573 Carpinus fangiana HOM05D002958 ORTHO05D003558 1.1e-24 116.7 154 49.4
Atru.chr2.2483 Acer truncatum HOM05D002958 ORTHO05D003558 1.4e-24 116.3 154 48.1
CiPaw.12G119100 Carya illinoinensis HOM05D002958 ORTHO05D003558 1.4e-24 116.3 154 47.4
Lj8C110T8 Lonicera japonica HOM05D002958 ORTHO05D003558 1.4e-24 116.3 154 47.4
PSO541G2422 Papaver somniferum HOM05D002958 ORTHO05D003558 1.4e-24 116.3 154 46.1
PSO675G8275 Papaver somniferum HOM05D002958 ORTHO05D003558 1.4e-24 116.3 154 46.1
vmacro09527 Vaccinium macrocarpon HOM05D002958 ORTHO05D003558 1.4e-24 116.3 175 44.6
GSVIVG01020566001 Vitis vinifera HOM05D002958 ORTHO05D003558 1.4e-24 116.3 154 46.1
arahy.Tifrunner.gnm1.ann1.VQ4NRX Arachis hypogaea HOM05D002958 ORTHO05D003558 1.8e-24 115.9 154 48.1
CDE02G0813 Ceratophyllum demersum HOM05D002958 ORTHO05D003558 1.8e-24 115.9 154 46.1
arahy.Tifrunner.gnm1.ann1.CK6KU2 Arachis hypogaea HOM05D002958 ORTHO05D003558 2.4e-24 115.5 154 48.1
BcaB05g22079 Brassica carinata HOM05D002958 ORTHO05D003558 2.4e-24 115.5 154 47.4
BcaC03g14381 Brassica carinata HOM05D002958 ORTHO05D003558 2.4e-24 115.5 154 47.4
C02p17920 Brassica napus HOM05D002958 ORTHO05D003558 2.4e-24 115.5 154 47.4
COL.COLO4_27183 Corchorus olitorius HOM05D002958 ORTHO05D003558 2.4e-24 115.5 154 46.1
Sed0013988 Sechium edule HOM05D002958 ORTHO05D003558 2.4e-24 115.5 154 46.1
A02p10810 Brassica napus HOM05D002958 ORTHO05D003558 3.1e-24 115.2 154 46.8
Carub.0008s1414 Capsella rubella HOM05D002958 ORTHO05D003558 3.1e-24 115.2 154 46.8
MELO3C016693.2 Cucumis melo HOM05D002958 ORTHO05D003558 3.1e-24 115.2 154 46.1
CsaV3_4G033640 Cucumis sativus L. HOM05D002958 ORTHO05D003558 3.1e-24 115.2 154 46.1
FvH4_3g19790 Fragaria vesca HOM05D002958 ORTHO05D003558 3.1e-24 115.2 154 47.4
FAN21G2785 Fragaria x ananassa HOM05D002958 ORTHO05D003558 3.1e-24 115.2 154 47.4
Manes.15G087800 Manihot esculenta HOM05D002958 ORTHO05D003558 3.1e-24 115.2 154 46.8
Potri.011G118066 Populus trichocarpa HOM05D002958 ORTHO05D003558 3.1e-24 115.2 154 47.4
Sabra16G0261600 Salix brachista HOM05D002958 ORTHO05D003558 3.1e-24 115.2 163 46.0
Lalb_Chr01g0016791 Lupinus albus HOM05D002958 ORTHO05D003558 4.0e-24 114.8 154 47.4
RcHm_v2.0_Chr5g0033201 Rosa chinensis HOM05D002958 ORTHO05D003558 4.0e-24 114.8 154 47.4
AT5G53850 Arabidopsis thaliana HOM05D002958 ORTHO05D003558 5.2e-24 114.4 154 46.8
BcaC04g20412 Brassica carinata HOM05D002958 ORTHO05D003558 5.2e-24 114.4 154 47.4
Cpa.g.sc80.76 Carica papaya HOM05D002958 ORTHO05D003558 5.2e-24 114.4 154 47.4
Gohir.A01G063000 Gossypium hirsutum HOM05D002958 ORTHO05D003558 5.2e-24 114.4 154 46.8
Gohir.D01G049400 Gossypium hirsutum HOM05D002958 ORTHO05D003558 5.2e-24 114.4 154 46.8
Gorai.002G069300 Gossypium raimondii HOM05D002958 ORTHO05D003558 5.2e-24 114.4 154 46.8
Aa31LG3G10080 Aethionema arabicum HOM05D002958 ORTHO05D003558 6.8e-24 114.0 154 46.8
BcaB08g35744 Brassica carinata HOM05D002958 ORTHO05D003558 6.8e-24 114.0 154 47.4
TWI39G0621 Tripterygium wilfordii HOM05D002958 ORTHO05D003558 6.8e-24 114.0 154 46.1
VMungo1080G0249 Vigna mungo HOM05D002958 ORTHO05D003558 6.8e-24 114.0 154 46.8
BraA02t06142Z Brassica rapa HOM05D002958 ORTHO05D003558 8.9e-24 113.6 160 45.6
AUR62039195 Chenopodium quinoa HOM05D002958 ORTHO05D003558 8.9e-24 113.6 170 44.7
Duzib170G0760 Durio zibethinus HOM05D002958 ORTHO05D003558 8.9e-24 113.6 154 46.1
Manes.13G144832 Manihot esculenta HOM05D002958 ORTHO05D003558 8.9e-24 113.6 154 48.7
MSTRG.6831 Avicennia marina HOM05D002958 ORTHO05D003558 1.2e-23 113.2 154 46.8
ClCG11G018020 Citrullus lanatus HOM05D002958 ORTHO05D003558 1.2e-23 113.2 164 43.3
Phvul.005G072900 Phaseolus vulgaris HOM05D002958 ORTHO05D003558 1.2e-23 113.2 154 46.1
Sp6g15910 Schrenkiella parvula HOM05D002958 ORTHO05D003558 1.2e-23 113.2 154 46.8
TWI14G0888 Tripterygium wilfordii HOM05D002958 ORTHO05D003558 1.2e-23 113.2 154 44.8
Lj3g0001420 Lotus japonicus HOM05D002958 ORTHO05D003558 1.5e-23 112.8 154 46.1
Actinidia13022 Actinidia chinensis HOM05D002958 ORTHO05D003558 2.0e-23 112.5 153 47.1
Duzib213G1007 Durio zibethinus HOM05D002958 ORTHO05D003558 2.6e-23 112.1 155 45.8
Medtr2g079110 Medicago truncatula HOM05D002958 ORTHO05D003558 3.4e-23 111.7 154 45.5
Thecc.07G091600 Theobroma cacao HOM05D002958 ORTHO05D003558 3.4e-23 111.7 154 45.5
Glyma.12G225300 Glycine max HOM05D002958 ORTHO05D003558 4.4e-23 111.3 154 45.5
Glyma.06G240100 Glycine max HOM05D002958 ORTHO05D003558 5.8e-23 110.9 154 46.1
BolC2t07923H Brassica oleracea HOM05D002958 ORTHO05D003558 7.6e-23 110.5 170 43.5
Eucgr.F03307 Eucalyptus grandis HOM05D002958 ORTHO05D003558 7.6e-23 110.5 154 44.8
MD11G1249900 Malus domestica HOM05D002958 ORTHO05D003558 7.6e-23 110.5 174 43.1
Glyma.13G276000 Glycine max HOM05D002958 ORTHO05D003558 9.9e-23 110.2 154 44.8
Thecc.02G181900 Theobroma cacao HOM05D002958 ORTHO05D003558 9.9e-23 110.2 154 46.8
A10p11240 Brassica napus HOM05D002958 ORTHO05D003558 1.3e-22 109.8 170 43.5
C09p43840 Brassica napus HOM05D002958 ORTHO05D003558 1.3e-22 109.8 170 43.5
BraA10t43217Z Brassica rapa HOM05D002958 ORTHO05D003558 1.3e-22 109.8 170 43.5
THA.LOC104799927 Tarenaya hassleriana HOM05D002958 ORTHO05D003558 1.3e-22 109.8 174 42.0
CARHR266980 Cardamine hirsuta HOM05D002958 ORTHO05D003558 2.9e-22 108.6 170 42.9
Mapoly0003s0138 Marchantia polymorpha HOM05D002958 ORTHO05D003558 2.9e-22 108.6 154 44.8
AL8G28910 Arabidopsis lyrata HOM05D002958 ORTHO05D003558 3.8e-22 108.2 170 42.4
BolC9t57268H Brassica oleracea HOM05D002958 ORTHO05D003558 3.8e-22 108.2 170 42.9
Thhalv10013244m.g Eutrema salsugineum HOM05D002958 ORTHO05D003558 3.8e-22 108.2 170 42.4
FAN11G0087 Fragaria x ananassa HOM05D002958 ORTHO05D003558 6.4e-22 107.5 174 42.0
FAN16G0300 Fragaria x ananassa HOM05D002958 ORTHO05D003558 6.4e-22 107.5 174 42.0
FAN25G2067 Fragaria x ananassa HOM05D002958 ORTHO05D003558 6.4e-22 107.5 174 42.0
CANSAT56G4387 Cannabis sativa HOM05D002958 ORTHO05D003558 1.1e-21 106.7 173 41.0
AagrBONN_evm.TU.Sc2ySwM_368.412 Anthoceros agrestis HOM05D002958 ORTHO05D003558 1.9e-21 105.9 154 44.2
SHI21536 Sapria himalayana HOM05D002958 ORTHO05D003558 7.1e-21 104.0 159 40.9
DCAR_013024 Daucus carota HOM05D002958 ORTHO05D003558 1.2e-20 103.2 155 43.2
Zm00001eb169620 Zea mays HOM05D002958 ORTHO05D003558 4.6e-20 101.3 154 40.9
SMO356G0618 Selaginella moellendorffii HOM05D002958 ORTHO05D003558 3.0e-19 98.6 154 41.6
Os11g0484000 Oryza sativa ssp. japonica HOM05D002958 ORTHO05D003558 5.1e-19 97.8 154 41.6
MBI06_g20686_MAGBIO Magnolia biondii HOM05D002958 ORTHO05D003558 1.1e-18 96.7 116 50.0
Cpa.g.sc83.52 Carica papaya HOM05D002958 ORTHO05D003558 1.9e-18 95.9 97 52.6
Cc05_g07390 Coffea canephora HOM05D002958 ORTHO05D003558 5.6e-18 94.4 153 41.8
Cc05_g07360 Coffea canephora HOM05D002958 ORTHO05D003558 7.3e-18 94.0 153 41.2
Pp3c3_4430 Physcomitrium patens HOM05D002958 ORTHO05D003558 1.6e-17 92.8 154 41.6
Hma1.2p1_2752F.1_g327880 Hydrangea macrophylla HOM05D002958 ORTHO05D003558 4.0e-16 88.2 139 43.9
Cc03_g12040 Coffea canephora HOM05D002958 ORTHO05D003558 1.2e-15 86.7 157 36.9
TAR624G0404 Trochodendron aralioides HOM05D002958 ORTHO05D003558 3.8e-14 81.6 66 65.2
MBI06_g23079_MAGBIO Magnolia biondii HOM05D002958 ORTHO05D003558 8.4e-14 80.5 59 67.8
Lj8C155G9 Lonicera japonica HOM05D002958 ORTHO05D003558 3.5e-12 75.1 34 100.0
SalBow4G1525 Salvia bowleyana HOM05D002958 ORTHO05D003558 6.0e-12 74.3 57 66.7
EL10Ac4g08198 Beta vulgaris HOM05D002958 ORTHO05D003558 1.7e-11 72.8 121 43.0
TAR624G0879 Trochodendron aralioides HOM05D002958 ORTHO05D003558 5.1e-11 71.2 35 91.4
Cre01.g016528 Chlamydomonas reinhardtii HOM05D002958 ORTHO05D003558 1.1e-10 70.1 154 34.4
Prupe.4G180000 Prunus persica HOM05D002958 ORTHO05D003558 1.1e-10 70.1 34 94.1
CSS0047160 Camellia sinensis var. sinensis HOM05D002958 ORTHO05D003558 1.5e-10 69.7 57 61.4
CSS0039562 Camellia sinensis var. sinensis HOM05D002958 ORTHO05D003558 1.9e-10 69.3 57 61.4
Ca_03507_v3 Cicer arietinum L. HOM05D002958 ORTHO05D003558 1.9e-10 69.3 34 88.2
Gorai.013G170700 Gossypium raimondii HOM05D002958 ORTHO05D003558 1.9e-10 69.3 38 78.9
Psat5g242200 Pisum sativum HOM05D002958 ORTHO05D003558 1.9e-10 69.3 34 88.2
Sc16g0007030 Simmondsia chinensis HOM05D002958 ORTHO05D003558 1.9e-10 69.3 34 94.1
TPR.G7973 Trifolium pratense HOM05D002958 ORTHO05D003558 1.9e-10 69.3 34 88.2
Dinv14925 Davidia involucrata HOM05D002958 ORTHO05D003558 3.3e-10 68.6 31 100.0
Gohir.A02G098700 Gossypium hirsutum HOM05D002958 ORTHO05D003558 3.3e-10 68.6 34 85.3
Gohir.D13G151100 Gossypium hirsutum HOM05D002958 ORTHO05D003558 3.3e-10 68.6 38 76.3
Lalb_Chr20g0109601 Lupinus albus HOM05D002958 ORTHO05D003558 3.3e-10 68.6 34 91.2
Sabra11G0103100 Salix brachista HOM05D002958 ORTHO05D003558 4.3e-10 68.2 57 61.4
Gohir.D13G152056 Gossypium hirsutum HOM05D002958 ORTHO05D003558 7.3e-10 67.4 57 61.4
SEGI_08533 Sequoiadendron giganteum HOM05D002958 ORTHO05D003558 4.8e-09 64.7 34 88.2
SEGI_29603 Sequoiadendron giganteum HOM05D002958 ORTHO05D003558 4.8e-09 64.7 34 88.2
Cfa014633 Carpinus fangiana HOM05D002958 ORTHO05D003558 6.2e-09 64.3 33 90.9
Haze_13197 Corylus avellana HOM05D002958 ORTHO05D003558 6.2e-09 64.3 37 81.1
QL08p039561 Quercus lobata HOM05D002958 ORTHO05D003558 1.8e-08 62.8 33 87.9
COL.COLO4_36342 Corchorus olitorius HOM05D002958 ORTHO05D003558 2.4e-08 62.4 31 90.3
QL08p039572 Quercus lobata HOM05D002958 ORTHO05D003558 2.4e-08 62.4 61 57.4
Glyma.12G153200 Glycine max HOM05D002958 ORTHO05D003558 3.1e-08 62.0 31 90.3
VMungo0647G0173 Vigna mungo HOM05D002958 ORTHO05D003558 6.9e-08 60.8 31 87.1
Actinidia11088 Actinidia chinensis HOM05D002958 ORTHO05D003558 1.2e-07 60.1 118 39.0
Lalb_Chr20g0109591 Lupinus albus HOM05D002958 ORTHO05D029259 9.9e-07 57.0 34 70.6
MELO3C019407.2 Cucumis melo HOM05D002958 ORTHO05D003558 2.9e-06 55.5 59 54.2
CBR_g20444 Chara braunii HOM05D002958 ORTHO05D003558 8.4e-06 53.9 42 61.9


User provided reference genes

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