Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0014681 Helianthus annuus HOM05D000347 ORTHO05D008062 3.5e-92 341.7 178 100.0
Lsat_1_v5_gn_5_179760 Lactuca sativa HOM05D000347 ORTHO05D008062 4.9e-62 241.5 184 74.5
GSVIVG01028561001 Vitis vinifera HOM05D000347 ORTHO05D008062 2.5e-42 176.0 185 60.0
Prupe.8G205000 Prunus persica HOM05D000347 ORTHO05D000694 4.3e-42 175.3 189 59.3
RcHm_v2.0_Chr6g0285151 Rosa chinensis HOM05D000347 ORTHO05D008062 2.8e-41 172.6 186 58.6
FvH4_2g19360 Fragaria vesca HOM05D000347 ORTHO05D008062 3.7e-41 172.2 185 56.8
FAN15G1475 Fragaria x ananassa HOM05D000347 ORTHO05D000694 6.2e-41 171.4 185 56.2
QL09p044668 Quercus lobata HOM05D000347 ORTHO05D008062 8.2e-41 171.0 186 57.0
FAN24G2098 Fragaria x ananassa HOM05D000347 ORTHO05D000694 1.1e-40 170.6 185 56.8
Actinidia37581 Actinidia chinensis HOM05D000347 ORTHO05D008062 3.1e-40 169.1 184 57.1
MD05G1178500 Malus domestica HOM05D000347 ORTHO05D008062 3.4e-39 165.6 182 56.6
Cc01_g17250 Coffea canephora HOM05D000347 ORTHO05D008062 5.8e-39 164.9 195 53.8
FAN27G2014 Fragaria x ananassa HOM05D000347 ORTHO05D008062 1.7e-38 163.3 179 55.3
CiPaw.04G106800 Carya illinoinensis HOM05D000347 ORTHO05D000694 2.2e-38 162.9 183 55.2
Actinidia30090 Actinidia chinensis HOM05D000347 ORTHO05D008062 2.9e-38 162.5 184 56.0
MD10G1166700 Malus domestica HOM05D000347 ORTHO05D008062 2.9e-38 162.5 182 55.5
Thecc.01G228300 Theobroma cacao HOM05D000347 ORTHO05D008062 2.5e-37 159.5 186 55.4
Migut.D00520 Erythranthe guttata HOM05D000347 ORTHO05D008062 3.2e-37 159.1 191 50.8
Manes.12G042000 Manihot esculenta HOM05D000347 ORTHO05D008062 2.7e-36 156.0 186 53.8
Eucgr.H00807 Eucalyptus grandis HOM05D000347 ORTHO05D008062 7.9e-36 154.5 183 52.5
Hma1.2p1_0351F.1_g132820 Hydrangea macrophylla HOM05D000347 ORTHO05D008062 1.8e-35 153.3 181 52.5
PGR083G0949 Punica granatum HOM05D000347 ORTHO05D008062 1.8e-35 153.3 180 53.3
CSS0034279 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D008062 2.3e-35 152.9 188 51.1
CiPaw.03G151400 Carya illinoinensis HOM05D000347 ORTHO05D008062 2.3e-35 152.9 180 54.4
Dinv19218 Davidia involucrata HOM05D000347 ORTHO05D008062 2.3e-35 152.9 184 51.6
Phvul.008G123300 Phaseolus vulgaris HOM05D000347 ORTHO05D008062 1.9e-34 149.8 186 49.5
Glyma.08G356200 Glycine max HOM05D000347 ORTHO05D008062 7.4e-34 147.9 188 50.5
Glyma.18G173300 Glycine max HOM05D000347 ORTHO05D008062 7.4e-34 147.9 187 49.2
Potri.002G240300 Populus trichocarpa HOM05D000347 ORTHO05D008062 2.8e-33 146.0 182 52.7
Lj1g0023077 Lotus japonicus HOM05D000347 ORTHO05D008062 8.2e-33 144.4 184 48.4
Medtr0027s0180 Medicago truncatula HOM05D000347 ORTHO05D008062 1.4e-32 143.7 187 49.7
VMungo1383G0854 Vigna mungo HOM05D000347 ORTHO05D008062 1.8e-32 143.3 184 48.9
Ciclev10021356m.g Citrus clementina HOM05D000347 ORTHO05D008062 6.9e-32 141.4 196 48.0
CsaV3_3G028770 Cucumis sativus L. HOM05D000347 ORTHO05D008062 6.9e-32 141.4 177 51.4
CANSAT01G0926 Cannabis sativa HOM05D000347 ORTHO05D008062 9.0e-32 141.0 195 46.7
TPR.G15284 Trifolium pratense HOM05D000347 ORTHO05D008062 1.2e-31 140.6 182 48.4
SGA_v2.0_scaffold1G00715 Striga asiatica HOM05D000347 ORTHO05D008062 1.5e-31 140.2 185 51.4
MELO3C018065.2 Cucumis melo HOM05D000347 ORTHO05D008062 2.6e-31 139.4 178 51.1
TAR636G2566 Trochodendron aralioides HOM05D000347 ORTHO05D008062 3.4e-31 139.0 203 44.8
Ca_07542_v3 Cicer arietinum L. HOM05D000347 ORTHO05D008062 4.5e-31 138.7 186 47.8
Actinidia23733 Actinidia chinensis HOM05D000347 ORTHO05D008062 1.0e-30 137.5 186 49.5
Oeu018505.1 Olea europaea HOM05D000879 ORTHO05D002043 1.0e-30 137.5 183 49.7
Rhsim13G0044000 Rhododendron simsii HOM05D000347 ORTHO05D008062 1.0e-30 137.5 181 52.5
TWI18G0408 Tripterygium wilfordii HOM05D000347 ORTHO05D008062 2.2e-30 136.3 240 42.5
Gohir.D11G142500 Gossypium hirsutum HOM05D000347 ORTHO05D008062 5.0e-30 135.2 185 50.3
Gorai.007G152800 Gossypium raimondii HOM05D000347 ORTHO05D008062 5.0e-30 135.2 185 50.3
Sabra02G0183100 Salix brachista HOM05D000347 ORTHO05D008062 5.0e-30 135.2 172 49.4
Gohir.A11G136100 Gossypium hirsutum HOM05D000347 ORTHO05D008062 6.5e-30 134.8 185 50.3
SalBow4G1846 Salvia bowleyana HOM05D000347 ORTHO05D008062 8.5e-30 134.4 166 51.2
Sed0024927 Sechium edule HOM05D000901 ORTHO05D008062 8.5e-30 134.4 177 47.5
MSTRG.21431 Avicennia marina HOM05D000347 ORTHO05D008062 4.2e-29 132.1 186 48.4
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 4.2e-29 132.1 170 46.5
Medtr7g059080 Medicago truncatula HOM05D000347 ORTHO05D008062 4.2e-29 132.1 160 51.2
Nitab4.5_0000866g0010 Nicotiana tabacum HOM05D000347 ORTHO05D008062 4.2e-29 132.1 191 46.6
Psat3g142320 Pisum sativum HOM05D000347 ORTHO05D008062 4.2e-29 132.1 187 47.1
AUR62031831 Chenopodium quinoa HOM05D000347 ORTHO05D008062 1.0e-27 127.5 192 47.4
Lalb_Chr03g0041901 Lupinus albus HOM05D000347 ORTHO05D008062 1.3e-27 127.1 177 45.2
Solyc09g061715.1 Solanum lycopersicum HOM05D000347 ORTHO05D008062 1.8e-27 126.7 190 47.4
Sopen06g034940 Solanum pennellii HOM05D000347 ORTHO05D008062 1.8e-27 126.7 186 45.2
Sopen09g024710 Solanum pennellii HOM05D000347 ORTHO05D008062 1.8e-27 126.7 190 47.4
Solyc06g083560.3 Solanum lycopersicum HOM05D000347 ORTHO05D008062 3.9e-27 125.6 181 44.2
Nn1g07779 Nelumbo nucifera HOM05D000347 ORTHO05D008062 7.4e-26 121.3 195 46.7
TAR365G0021 Trochodendron aralioides HOM05D000347 ORTHO05D008062 7.4e-26 121.3 195 43.6
Sed0024241 Sechium edule HOM05D000347 ORTHO05D008062 2.8e-25 119.4 172 44.2
Cpa.g.sc8.175 Carica papaya HOM05D000347 ORTHO05D008062 4.8e-25 118.6 166 50.6
ECA248G1409 Erigeron canadensis HOM05D000102 ORTHO05D000138 1.1e-24 117.5 71 78.9
PGSC0003DMG400020089 Solanum tuberosum HOM05D007853 ORTHO05D009873 1.4e-24 117.1 176 44.3
Aqoxy2G03776 Aquilegia oxysepala HOM05D000347 ORTHO05D008062 3.1e-24 115.9 180 43.9
vmacro02746 Vaccinium macrocarpon HOM05D000347 ORTHO05D008062 6.9e-24 114.8 181 44.2
PGSC0003DMG400003422 Solanum tuberosum HOM05D000347 ORTHO05D008062 1.2e-23 114.0 157 47.8
Lalb_Chr01g0022451 Lupinus albus HOM05D000347 ORTHO05D008062 3.8e-22 109.0 178 41.0
TAR365G1261 Trochodendron aralioides HOM05D000347 ORTHO05D008062 3.8e-22 109.0 192 39.6
arahy.Tifrunner.gnm1.ann1.54FW37 Arachis hypogaea HOM05D000347 ORTHO05D008062 5.5e-21 105.1 196 41.3
arahy.Tifrunner.gnm1.ann1.W0YDFD Arachis hypogaea HOM05D000347 ORTHO05D008062 7.2e-21 104.8 194 40.7
Nitab4.5_0003790g0070 Nicotiana tabacum HOM05D000347 ORTHO05D008062 9.4e-21 104.4 113 54.9
Atru.chr5.2056 Acer truncatum HOM05D000347 ORTHO05D008062 4.7e-20 102.1 108 50.0
AUR62008877 Chenopodium quinoa HOM05D000347 ORTHO05D008062 4.7e-20 102.1 123 51.2
DCAR_018551 Daucus carota HOM05D000347 ORTHO05D008062 6.1e-20 101.7 177 42.4
DCAR_004713 Daucus carota HOM05D000347 ORTHO05D008062 2.6e-18 96.3 179 40.8
Ah.08g214040 Amaranthus hybridus HOM05D000901 ORTHO05D008062 7.4e-18 94.7 188 43.1
Glyma.16G094000 Glycine max HOM05D000347 ORTHO05D008062 2.2e-17 93.2 165 37.0
Sc24g0003600 Simmondsia chinensis HOM05D000347 ORTHO05D008062 4.8e-17 92.0 184 39.1
Haze_24776 Corylus avellana HOM05D000347 ORTHO05D008062 3.1e-16 89.4 98 56.1
Peaxi162Scf00517g00428 Petunia axillaris HOM05D000347 ORTHO05D008062 5.3e-16 88.6 179 38.0
Peaxi162Scf02141g00004 Petunia axillaris HOM05D000347 ORTHO05D008062 2.6e-15 86.3 114 49.1
Oeu058867.1 Olea europaea HOM05D000347 ORTHO05D008062 3.4e-15 85.9 68 64.7
VMungo0331G1006 Vigna mungo HOM05D000347 ORTHO05D008062 3.4e-15 85.9 177 36.2
Gohir.D08G211800 Gossypium hirsutum HOM05D000347 ORTHO05D008062 5.9e-15 85.1 163 39.9
Sc05g0002410 Simmondsia chinensis HOM05D000347 ORTHO05D008062 5.9e-15 85.1 184 41.3
Gorai.004G225100 Gossypium raimondii HOM05D000347 ORTHO05D008062 5.0e-14 82.0 185 37.8
Lj3g0009150 Lotus japonicus HOM05D000347 ORTHO05D008062 1.1e-13 80.9 164 36.0
Gohir.A08G194000 Gossypium hirsutum HOM05D000347 ORTHO05D008062 1.4e-13 80.5 163 38.0
Phvul.010G019000 Phaseolus vulgaris HOM05D000347 ORTHO05D008062 5.5e-13 78.6 182 34.6
THA.LOC104821644 Tarenaya hassleriana HOM05D000347 ORTHO05D008062 9.4e-13 77.8 153 37.9
Thhalv10002691m.g Eutrema salsugineum HOM05D011699 ORTHO05D008062 3.6e-12 75.9 173 37.0
Nitab4.5_0002085g0080 Nicotiana tabacum HOM05D000347 ORTHO05D008062 2.3e-11 73.2 179 33.5
MBI07_g21075_MAGBIO Magnolia biondii HOM05D000347 ORTHO05D008062 8.8e-11 71.2 117 47.0
BolC7t41607H Brassica oleracea HOM05D011699 ORTHO05D008062 1.5e-10 70.5 135 39.3
Medtr0027s0200 Medicago truncatula HOM05D000347 ORTHO05D008062 1.5e-10 70.5 95 49.5
C07p11290 Brassica napus HOM05D011699 ORTHO05D008062 2.0e-10 70.1 140 37.9
BcaC06g35749 Brassica carinata HOM05D011699 ORTHO05D008062 2.6e-10 69.7 135 39.3
Phvul.010G019300 Phaseolus vulgaris HOM05D000347 ORTHO05D008062 1.7e-09 67.0 175 30.9
Sp3g22490 Schrenkiella parvula HOM05D011699 ORTHO05D008062 1.7e-09 67.0 116 38.8
BcaB06g26692 Brassica carinata HOM05D011699 ORTHO05D008062 2.2e-09 66.6 183 31.7
A07p07520 Brassica napus HOM05D011699 ORTHO05D008062 2.2e-09 66.6 134 38.1
BraA07t28543Z Brassica rapa HOM05D011699 ORTHO05D008062 2.2e-09 66.6 134 38.1
Nn3g19918 Nelumbo nucifera HOM05D000347 ORTHO05D008062 2.8e-09 66.2 93 45.2
PSO017G1362 Papaver somniferum HOM05D000347 ORTHO05D008062 2.8e-09 66.2 227 33.5
PSO063G6109 Papaver somniferum HOM05D000347 ORTHO05D008062 2.8e-09 66.2 227 33.0
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 1.4e-08 63.9 93 47.3
AL3G40480 Arabidopsis lyrata HOM05D011699 ORTHO05D008062 2.4e-08 63.2 157 36.3
Carub.0003s2514 Capsella rubella HOM05D011699 ORTHO05D008062 3.1e-08 62.8 166 37.3
AT3G24750 Arabidopsis thaliana HOM05D011699 ORTHO05D008062 9.1e-08 61.2 153 36.6
SalBow2G2623 Salvia bowleyana HOM05D000347 ORTHO05D008062 6.5e-06 55.1 157 32.5


User provided reference genes

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