Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0014641 Helianthus annuus HOM05D005884 ORTHO05D007282 3.3e-99 365.2 197 100.0
ECA248G2691 Erigeron canadensis HOM05D005884 ORTHO05D007282 1.9e-54 216.5 205 64.9
Lsat_1_v5_gn_5_179880 Lactuca sativa HOM05D005884 ORTHO05D007282 1.3e-52 210.3 209 66.5
Nitab4.5_0000866g0050 Nicotiana tabacum HOM05D005884 ORTHO05D007282 5.1e-36 155.2 198 51.5
CSS0024949 Camellia sinensis var. sinensis HOM05D005884 ORTHO05D007282 2.5e-35 152.9 105 76.2
Peaxi162Scf00107g01314 Petunia axillaris HOM05D005884 ORTHO05D007282 2.5e-35 152.9 101 78.2
Nitab4.5_0003790g0020 Nicotiana tabacum HOM05D005884 ORTHO05D007282 4.3e-35 152.1 146 63.0
Dinv04661 Davidia involucrata HOM05D005884 ORTHO05D007282 5.7e-35 151.8 130 66.9
Cc03_g12390 Coffea canephora HOM05D005884 ORTHO05D007282 9.7e-35 151.0 209 51.2
GSVIVG01028583001 Vitis vinifera HOM05D005884 ORTHO05D007282 3.7e-34 149.1 195 50.3
Dinv19212 Davidia involucrata HOM05D005884 ORTHO05D007282 4.8e-34 148.7 145 60.7
CSS0032503 Camellia sinensis var. sinensis HOM05D005884 ORTHO05D007282 6.3e-34 148.3 163 58.9
Eucgr.H00802 Eucalyptus grandis HOM05D005884 ORTHO05D007282 8.2e-34 147.9 147 61.2
Sc05g0002430 Simmondsia chinensis HOM05D005884 ORTHO05D007282 2.4e-33 146.4 158 57.6
Oeu015899.1 Olea europaea HOM05D005884 ORTHO05D007282 3.1e-33 146.0 153 58.2
TAR362G0919 Trochodendron aralioides HOM05D005884 ORTHO05D007282 3.1e-33 146.0 216 50.9
Ciclev10022209m.g Citrus clementina HOM05D005884 ORTHO05D007282 6.9e-33 144.8 165 57.6
Hma1.2p1_0351F.1_g132860 Hydrangea macrophylla HOM05D005884 ORTHO05D007282 6.9e-33 144.8 97 79.4
PGR044G0377 Punica granatum HOM05D005884 ORTHO05D007282 6.9e-33 144.8 166 56.0
CiPaw.03G150900 Carya illinoinensis HOM05D005884 ORTHO05D007282 9.0e-33 144.4 193 46.6
Thecc.01G227600 Theobroma cacao HOM05D005884 ORTHO05D007282 9.0e-33 144.4 142 60.6
Lj3g0000124 Lotus japonicus HOM05D005884 ORTHO05D007282 1.5e-32 143.7 159 57.2
Actinidia23729 Actinidia chinensis HOM05D005884 ORTHO05D007282 2.0e-32 143.3 133 65.4
Aqoxy2G03761 Aquilegia oxysepala HOM05D005884 ORTHO05D007282 2.0e-32 143.3 168 58.9
Duzib133G0404 Durio zibethinus HOM05D005884 ORTHO05D007282 4.5e-32 142.1 135 62.2
Potri.002G241000 Populus trichocarpa HOM05D005884 ORTHO05D007282 5.9e-32 141.7 173 52.0
Rhsim01G0257200 Rhododendron simsii HOM05D005884 ORTHO05D007282 5.9e-32 141.7 149 58.4
Glyma.18G149300 Glycine max HOM05D005884 ORTHO05D007282 7.7e-32 141.4 107 72.0
Glyma.03G080200 Glycine max HOM05D005884 ORTHO05D007282 1.7e-31 140.2 192 47.9
Ca_20129_v3 Cicer arietinum L. HOM05D005884 ORTHO05D007282 2.2e-31 139.8 115 70.4
CiPaw.04G106200 Carya illinoinensis HOM05D005884 ORTHO05D007282 6.5e-31 138.3 152 53.3
DCAR_018555 Daucus carota HOM05D005884 ORTHO05D007282 8.5e-31 137.9 115 68.7
CAN.G122.4 Capsicum annuum HOM05D005884 ORTHO05D007282 1.9e-30 136.7 103 73.8
PGSC0003DMG400028009 Solanum tuberosum HOM05D005884 ORTHO05D007282 1.9e-30 136.7 146 61.0
Gohir.A07G156200 Gossypium hirsutum HOM05D005884 ORTHO05D007282 2.5e-30 136.3 200 48.5
COL.COLO4_10043 Corchorus olitorius HOM05D003123 ORTHO05D007282 3.2e-30 136.0 155 56.1
vmacro14762 Vaccinium macrocarpon HOM05D005884 ORTHO05D007282 3.2e-30 136.0 133 60.9
TWI36G0226 Tripterygium wilfordii HOM05D005884 ORTHO05D007282 4.2e-30 135.6 130 63.1
FAN15G1595 Fragaria x ananassa HOM05D005884 ORTHO05D007282 5.5e-30 135.2 107 72.0
Manes.12G041200 Manihot esculenta HOM05D005884 ORTHO05D007282 5.5e-30 135.2 142 54.9
Phvul.010G014200 Phaseolus vulgaris HOM05D005884 ORTHO05D007282 5.5e-30 135.2 189 47.6
QL02p021928 Quercus lobata HOM05D005884 ORTHO05D007282 5.5e-30 135.2 185 53.0
Manes.13G044700 Manihot esculenta HOM05D005884 ORTHO05D007282 7.2e-30 134.8 156 54.5
FAN27G0062 Fragaria x ananassa HOM05D005884 ORTHO05D007282 1.2e-29 134.0 107 72.0
FvH4_2g19250 Fragaria vesca HOM05D005884 ORTHO05D007282 1.6e-29 133.7 107 72.0
FAN24G3425 Fragaria x ananassa HOM05D005884 ORTHO05D007282 1.6e-29 133.7 107 72.0
MD05G1177500 Malus domestica HOM05D005884 ORTHO05D007282 1.6e-29 133.7 152 52.6
Migut.D00525 Erythranthe guttata HOM05D005884 ORTHO05D007282 2.1e-29 133.3 123 63.4
Duzib138G0327 Durio zibethinus HOM05D005884 ORTHO05D007282 2.7e-29 132.9 181 50.8
arahy.Tifrunner.gnm1.ann1.C60K2U Arachis hypogaea HOM05D005884 ORTHO05D007282 4.6e-29 132.1 113 67.3
Lj2A1133T33 Lonicera japonica HOM05D005884 ORTHO05D007282 4.6e-29 132.1 131 64.9
Sopen09g024260 Solanum pennellii HOM05D005884 ORTHO05D007282 6.1e-29 131.7 146 59.6
Medtr4g017880 Medicago truncatula HOM05D005884 ORTHO05D007282 7.9e-29 131.3 195 49.2
CDE02G3372 Ceratophyllum demersum HOM05D005884 ORTHO05D007282 1.0e-28 131.0 155 52.9
Gorai.001G186100 Gossypium raimondii HOM05D005884 ORTHO05D007282 1.0e-28 131.0 200 49.0
Solyc09g061440.4 Solanum lycopersicum HOM05D005884 ORTHO05D007282 1.0e-28 131.0 146 58.9
Nn1g07794 Nelumbo nucifera HOM05D005884 ORTHO05D007282 1.4e-28 130.6 140 60.7
Gohir.D07G162500 Gossypium hirsutum HOM05D005884 ORTHO05D007282 1.8e-28 130.2 194 49.5
Sabra02G0183600 Salix brachista HOM05D005884 ORTHO05D007282 1.8e-28 130.2 147 53.1
Hund18350 Selenicereus undatus HOM05D005884 ORTHO05D007282 3.0e-28 129.4 203 44.3
arahy.Tifrunner.gnm1.ann1.Q3DN0U Arachis hypogaea HOM05D005884 ORTHO05D007282 5.1e-28 128.6 163 52.8
ATR0736G055 Amborella trichopoda HOM05D005884 ORTHO05D007282 6.7e-28 128.3 133 57.9
TAR633G1722 Trochodendron aralioides HOM05D005884 ORTHO05D007282 6.7e-28 128.3 151 57.6
PSO017G2163 Papaver somniferum HOM05D005884 ORTHO05D007282 8.8e-28 127.9 131 60.3
Psat7g243200 Pisum sativum HOM05D005884 ORTHO05D007282 8.8e-28 127.9 152 55.3
MSTRG.18383 Avicennia marina HOM05D005884 ORTHO05D007282 1.1e-27 127.5 130 60.8
AUR62031836 Chenopodium quinoa HOM05D005884 ORTHO05D007282 1.1e-27 127.5 150 56.0
TWI18G1166 Tripterygium wilfordii HOM05D005884 ORTHO05D007282 1.1e-27 127.5 177 49.2
Lalb_Chr07g0194041 Lupinus albus HOM05D005884 ORTHO05D007282 1.5e-27 127.1 147 55.8
Cpa.g.sc8.170 Carica papaya HOM05D005884 ORTHO05D007282 2.0e-27 126.7 154 53.9
RcHm_v2.0_Chr6g0285061 Rosa chinensis HOM05D005884 ORTHO05D007282 2.0e-27 126.7 160 53.8
PSO063G4085 Papaver somniferum HOM05D005884 ORTHO05D007282 4.3e-27 125.6 196 45.4
FAN15G1921 Fragaria x ananassa HOM05D005884 ORTHO05D007282 1.7e-26 123.6 159 54.1
BcaB03g16138 Brassica carinata HOM05D005884 ORTHO05D007282 2.2e-26 123.2 196 46.9
Carub.0007s2947 Capsella rubella HOM05D005884 ORTHO05D007282 3.7e-26 122.5 109 64.2
EL10Ac7g17785 Beta vulgaris HOM05D005884 ORTHO05D007282 4.8e-26 122.1 207 46.4
CsaV3_7G025830 Cucumis sativus L. HOM05D005884 ORTHO05D007282 4.8e-26 122.1 178 46.6
Migut.N02263 Erythranthe guttata HOM05D005884 ORTHO05D007282 1.4e-25 120.6 105 62.9
AUR62008873 Chenopodium quinoa HOM05D005884 ORTHO05D007282 4.1e-25 119.0 141 55.3
MBI07_g23671_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 6.9e-25 118.2 160 47.5
ClCG09G009110 Citrullus lanatus HOM05D005884 ORTHO05D007282 9.1e-25 117.9 163 47.9
Haze_24787 Corylus avellana HOM05D005884 ORTHO05D007282 9.1e-25 117.9 131 55.0
Sp7g10660 Schrenkiella parvula HOM05D005884 ORTHO05D007282 9.1e-25 117.9 167 50.3
Ah.08g213990 Amaranthus hybridus HOM05D005884 ORTHO05D007282 1.2e-24 117.5 160 51.9
Cfa002560 Carpinus fangiana HOM05D005884 ORTHO05D007282 1.2e-24 117.5 131 55.0
SalBow4G1286 Salvia bowleyana HOM05D005884 ORTHO05D007282 1.2e-24 117.5 140 55.7
Gorai.009G365800 Gossypium raimondii HOM05D005884 ORTHO05D007282 2.6e-24 116.3 129 58.9
Prupe.8G204400 Prunus persica HOM05D005884 ORTHO05D007282 4.5e-24 115.5 131 56.5
MELO3C012764.2 Cucumis melo HOM05D005884 ORTHO05D007282 7.7e-24 114.8 194 43.3
Thhalv10026263m.g Eutrema salsugineum HOM05D005884 ORTHO05D007282 7.7e-24 114.8 135 54.8
TPR.G8219 Trifolium pratense HOM05D005884 ORTHO05D007282 1.7e-23 113.6 179 49.7
HPP92_022492 Vanilla planifolia HOM05D005884 ORTHO05D007282 1.7e-23 113.6 106 60.4
BolC4t25837H Brassica oleracea HOM05D005884 ORTHO05D007282 5.0e-23 112.1 155 51.0
SGA_v2.0_scaffold8G04650 Striga asiatica HOM05D005884 ORTHO05D007282 8.5e-23 111.3 141 53.2
BraA04t16580Z Brassica rapa HOM05D005884 ORTHO05D007282 1.1e-22 110.9 155 50.3
BcaC02g09439 Brassica carinata HOM05D005884 ORTHO05D007282 2.5e-22 109.8 155 50.3
A04p08870 Brassica napus HOM05D005884 ORTHO05D007282 2.5e-22 109.8 148 50.0
SEGI_25444 Sequoiadendron giganteum HOM05D005884 ORTHO05D007282 5.5e-22 108.6 129 52.7
TAR194G0001 Trochodendron aralioides HOM05D005884 ORTHO05D004773 7.9e-21 104.8 89 70.8
C04p42740 Brassica napus HOM05D005884 ORTHO05D007282 1.4e-20 104.0 104 60.6
CANSAT01G0442 Cannabis sativa HOM05D005884 ORTHO05D007282 1.8e-20 103.6 157 47.8
VMungo0331G1358 Vigna mungo HOM05D005884 ORTHO05D007282 2.3e-20 103.2 79 68.4
Zm00001eb426500 Zea mays HOM05D005884 ORTHO05D007282 2.3e-20 103.2 103 59.2
Gohir.A09G200610 Gossypium hirsutum HOM05D005884 ORTHO05D007282 3.0e-20 102.8 118 60.2
Os04g0513000 Oryza sativa ssp. japonica HOM05D005884 ORTHO05D007282 5.1e-20 102.1 107 57.0
Sed0001531 Sechium edule HOM05D005884 ORTHO05D007282 6.7e-20 101.7 209 40.7
MD10G1165900 Malus domestica HOM05D005884 ORTHO05D007282 1.1e-19 100.9 79 65.8
MSTRG.17548 Avicennia marina HOM05D005884 ORTHO05D007282 2.6e-19 99.8 99 60.6
MBI10_g44186_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 2.8e-18 96.3 141 46.8
unitig_22.g6325 Utricularia gibba HOM05D005884 ORTHO05D007282 2.8e-18 96.3 144 47.2
Mapoly0028s0026 Marchantia polymorpha HOM05D005884 ORTHO05D007282 3.7e-18 95.9 149 47.7
CARHR218670 Cardamine hirsuta HOM05D005884 ORTHO05D007282 9.1e-17 91.3 134 47.0
Aa31LG9G4610 Aethionema arabicum HOM05D005884 ORTHO05D007282 1.5e-16 90.5 122 47.5
THA.LOC104808781 Tarenaya hassleriana HOM05D005884 ORTHO05D007282 2.6e-16 89.7 161 44.1
THA.LOC104804605 Tarenaya hassleriana HOM05D005884 ORTHO05D007282 3.5e-16 89.4 73 64.4
AT4G13200 Arabidopsis thaliana HOM05D005884 ORTHO05D007282 4.5e-16 89.0 131 47.3
MBI06_g14323_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 1.1e-14 84.3 80 60.0
SalBow2G0198 Salvia bowleyana HOM05D005884 ORTHO05D007282 3.2e-14 82.8 100 53.0
AL9U10790 Arabidopsis lyrata HOM05D005884 ORTHO05D007282 1.6e-13 80.5 129 42.6
Atru.chr3.3178 Acer truncatum HOM05D005884 ORTHO05D007282 8.0e-13 78.2 99 48.5
AagrBONN_evm.TU.Sc2ySwM_228.3174 Anthoceros agrestis HOM05D005884 ORTHO05D007282 1.1e-11 74.3 85 52.9
Gohir.A03G143925 Gossypium hirsutum HOM05D005884 ORTHO05D007282 4.4e-11 72.4 100 53.0
Gorai.001G128300 Gossypium raimondii HOM05D005884 ORTHO05D007282 4.4e-11 72.4 100 53.0
Sed0008993 Sechium edule HOM05D005884 ORTHO05D007282 4.4e-11 72.4 99 47.5
Gorai.001G116800 Gossypium raimondii HOM05D005884 ORTHO05D007282 5.7e-11 72.0 98 54.1
Gorai.002G226800 Gossypium raimondii HOM05D005884 ORTHO05D007282 5.7e-11 72.0 98 54.1
Pp3c5_25810 Physcomitrium patens HOM05D005884 ORTHO05D007282 7.4e-11 71.6 129 39.5
MCO02G464 Micromonas commoda HOM05D005884 ORTHO05D007282 4.1e-09 65.9 73 50.7
CDE01G0686 Ceratophyllum demersum HOM05D005884 ORTHO05D007282 8.5e-07 58.2 87 44.8


User provided reference genes

Program Settings