Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0013391 Helianthus annuus HOM05D003783 ORTHO05D004568 2.8e-82 308.5 150 100.0
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 2.9e-71 271.9 135 98.5
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 2.9e-71 271.9 135 98.5
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 2.9e-71 271.9 135 98.5
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 2.9e-71 271.9 135 98.5
Lsat_1_v5_gn_4_139080 Lactuca sativa HOM05D003783 ORTHO05D004568 2.4e-70 268.9 135 97.8
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 9.2e-70 266.9 134 95.5
AL3G44470 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 3.5e-69 265.0 134 95.5
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 6.0e-69 264.2 133 96.2
Sp3g25860 Schrenkiella parvula HOM05D003783 ORTHO05D004568 6.0e-69 264.2 134 94.8
BraSC48t46298Z Brassica rapa HOM05D003783 ORTHO05D004568 1.7e-68 262.7 134 94.8
BraSC48t46316Z Brassica rapa HOM05D003783 ORTHO05D004568 1.7e-68 262.7 134 94.8
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 1.7e-68 262.7 134 95.5
CARHR283230 Cardamine hirsuta HOM05D003783 ORTHO05D004568 3.0e-68 261.9 134 94.8
BraSC177t45761Z Brassica rapa HOM05D003783 ORTHO05D004568 6.6e-68 260.8 134 94.0
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 1.9e-67 259.2 134 94.8
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 1.9e-67 259.2 134 94.8
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 5.6e-67 257.7 134 94.0
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 5.6e-67 257.7 134 94.0
Lj2P1232T100 Lonicera japonica HOM05D003783 ORTHO05D004568 9.5e-67 256.9 147 87.1
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 1.2e-66 256.5 134 94.0
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 1.6e-66 256.1 134 93.3
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 2.8e-66 255.4 134 94.0
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 2.8e-66 255.4 134 94.0
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 1.1e-65 253.4 134 93.3
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 1.1e-65 253.4 134 93.3
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 1.8e-65 252.7 134 93.3
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 2.3e-65 252.3 134 93.3
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 3.1e-65 251.9 133 93.2
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 6.8e-65 250.8 135 93.3
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 1.5e-64 249.6 134 92.5
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.5e-64 249.6 128 95.3
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.5e-64 249.6 128 95.3
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.5e-64 249.6 128 95.3
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 2.6e-64 248.8 134 91.8
Eucgr.C03075 Eucalyptus grandis HOM05D003783 ORTHO05D004568 9.9e-64 246.9 134 91.0
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.7e-63 246.1 134 90.3
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 4.9e-63 244.6 134 90.3
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 8.3e-63 243.8 134 89.6
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 1.1e-62 243.4 134 91.0
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 9.2e-62 240.4 134 89.6
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 1.6e-61 239.6 134 88.8
Solyc11g063630.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.5e-61 238.4 128 91.4
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 1.1e-59 233.4 135 85.9
AT2G07768 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 7.3e-59 230.7 120 95.0
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 7.3e-59 230.7 134 86.6
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 7.3e-59 230.7 134 86.6
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 7.3e-59 230.7 134 86.6
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 7.3e-59 230.7 134 86.6
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 7.3e-59 230.7 134 86.6
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 7.3e-59 230.7 134 86.6
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 1.1e-57 226.9 119 91.6
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 5.2e-57 224.6 120 92.5
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 7.6e-56 220.7 125 88.8
Lsat_1_v5_gn_7_67781 Lactuca sativa HOM05D003783 ORTHO05D004568 1.1e-54 216.9 114 92.1
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 1.4e-54 216.5 134 82.1
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 4.1e-54 214.9 114 93.0
ATR1173G003 Amborella trichopoda HOM05D003783 ORTHO05D004568 1.2e-53 213.4 135 78.5
BolC1t03452H Brassica oleracea HOM05D003783 ORTHO05D004568 3.5e-53 211.8 109 90.8
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 3.5e-53 211.8 134 80.6
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 1.0e-52 210.3 108 93.5
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 6.6e-52 207.6 105 95.2
BcaC09g49589 Brassica carinata HOM05D003783 ORTHO05D004568 1.1e-51 206.8 102 95.1
C01p34860 Brassica napus HOM05D003783 ORTHO05D004568 1.1e-51 206.8 106 91.5
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 1.5e-51 206.5 134 77.6
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 3.3e-51 205.3 130 81.5
HanXRQChr11g0334181 Helianthus annuus HOM05D003783 ORTHO05D004568 3.6e-50 201.8 103 94.2
HanXRQChr17g0544011 Helianthus annuus HOM05D003783 ORTHO05D004568 3.6e-50 201.8 103 94.2
ClCG09G015160 Citrullus lanatus HOM05D003783 ORTHO05D004568 4.7e-50 201.4 108 93.5
C01p34760 Brassica napus HOM05D003783 ORTHO05D004568 3.1e-49 198.7 106 88.7
HanXRQChr01g0029691 Helianthus annuus HOM05D003783 ORTHO05D004568 1.2e-48 196.8 95 97.9
PGR028G0013 Punica granatum HOM05D003783 ORTHO05D004568 9.9e-48 193.7 117 85.5
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 6.4e-47 191.0 102 89.2
BraSC48t46351Z Brassica rapa HOM05D003783 ORTHO05D004568 1.1e-46 190.3 100 93.0
PSO782G0649 Papaver somniferum HOM05D003783 ORTHO05D004568 3.5e-45 185.3 116 79.3
PSO135G0232 Papaver somniferum HOM05D003783 ORTHO05D004568 1.0e-44 183.7 115 80.9
PSO675G6716 Papaver somniferum HOM05D003783 ORTHO05D004568 1.3e-44 183.3 116 79.3
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 9.0e-41 170.6 102 85.3
BolC1t03443H Brassica oleracea HOM05D003783 ORTHO05D004568 1.1e-38 163.7 91 86.8
CAN.G1439.8 Capsicum annuum HOM05D003783 ORTHO05D004568 3.2e-38 162.2 101 81.2
BraSC48t46228Z Brassica rapa HOM05D003783 ORTHO05D004568 9.3e-38 160.6 78 94.9
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 7.6e-32 141.0 116 63.8
BolSC28t60306H Brassica oleracea HOM05D003783 ORTHO05D004568 4.9e-31 138.3 102 69.6
BolSC28t60363H Brassica oleracea HOM05D003783 ORTHO05D004568 4.9e-31 138.3 102 69.6
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 1.4e-30 136.7 103 69.9
AUR62033936 Chenopodium quinoa HOM05D003783 ORTHO05D004568 4.2e-30 135.2 102 69.6
Ciclev10003580m.g Citrus clementina HOM05D003783 ORTHO05D004568 3.9e-28 128.6 96 68.8
BraSC54t46361Z Brassica rapa HOM05D003783 ORTHO05D004568 1.5e-27 126.7 66 90.9
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 2.5e-27 125.9 82 75.6
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 1.6e-26 123.2 60 95.0
TPR.G22134 Trifolium pratense HOM05D003783 ORTHO05D004568 2.1e-26 122.9 59 96.6
Lalb_Chr11g0068271 Lupinus albus HOM05D003783 ORTHO05D004568 3.1e-25 119.0 68 83.8
CAN.G134.19 Capsicum annuum HOM05D003783 ORTHO05D004568 4.9e-23 111.7 125 49.6
Nitab4.5_0000128g0160 Nicotiana tabacum HOM05D003783 ORTHO05D004568 9.7e-19 97.4 47 95.7
Solyc08g029270.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 5.9e-16 88.2 54 72.2
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.7e-15 86.7 134 41.0
Solyc04g049870.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 8.5e-15 84.3 95 52.6
Aqoxy1G02245 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 1.4e-14 83.6 52 86.5
Nitab4.5_0002589g0080 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.9e-14 83.2 49 81.6
Lalb_Chr22g0357821 Lupinus albus HOM05D003783 ORTHO05D004568 1.1e-09 67.4 75 50.7
Solyc03g013380.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.8e-09 66.6 45 75.6
Nitab4.5_0011099g0020 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.5e-08 63.5 38 81.6
CAN.G1001.41 Capsicum annuum HOM05D003783 ORTHO05D004568 1.0e-07 60.8 128 34.4
TPR.G13188 Trifolium pratense HOM05D003783 ORTHO05D004568 9.4e-06 54.3 31 71.0


User provided reference genes

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