Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0013251 Helianthus annuus HOM05D004794 ORTHO05D005875 6.5e-188 660.6 343 100.0
HanXRQChr15g0477711 Helianthus annuus HOM05D004794 ORTHO05D005875 4.6e-157 558.1 343 86.6
Lsat_1_v5_gn_3_54000 Lactuca sativa HOM05D004794 ORTHO05D005875 1.3e-151 540.0 348 83.6
Lj3A877T98 Lonicera japonica HOM05D004794 ORTHO05D005875 2.2e-143 512.7 348 78.2
ECA246G3704 Erigeron canadensis HOM05D004794 ORTHO05D005875 7.6e-136 487.6 275 91.3
Lsat_1_v5_gn_4_15760 Lactuca sativa HOM05D004794 ORTHO05D005875 1.9e-134 483.0 353 73.7
Actinidia31991 Actinidia chinensis HOM05D004794 ORTHO05D005875 3.9e-132 475.3 348 72.4
Hma1.2p1_0114F.1_g055470 Hydrangea macrophylla HOM05D004794 ORTHO05D005875 6.6e-132 474.6 352 71.9
Dinv16165 Davidia involucrata HOM05D004794 ORTHO05D005875 8.7e-132 474.2 358 70.7
Nn4g24023 Nelumbo nucifera HOM05D004794 ORTHO05D005875 5.6e-131 471.5 356 71.3
vmacro01423 Vaccinium macrocarpon HOM05D004794 ORTHO05D005875 1.3e-130 470.3 360 69.7
Dinv04904 Davidia involucrata HOM05D004794 ORTHO05D005875 1.6e-130 469.9 359 69.4
DCAR_007276 Daucus carota HOM05D004794 ORTHO05D005875 2.4e-129 466.1 270 88.1
Nitab4.5_0013146g0030 Nicotiana tabacum HOM05D004794 ORTHO05D005875 5.3e-129 464.9 357 69.7
TAR374G0638 Trochodendron aralioides HOM05D004794 ORTHO05D005875 9.0e-129 464.2 337 71.2
Nitab4.5_0000350g0140 Nicotiana tabacum HOM05D004794 ORTHO05D005875 1.2e-128 463.8 357 69.5
Cfa015814 Carpinus fangiana HOM05D004794 ORTHO05D005875 2.0e-128 463.0 358 70.9
QL01p003046 Quercus lobata HOM05D004794 ORTHO05D005875 5.8e-128 461.5 359 71.3
PGSC0003DMG400030563 Solanum tuberosum HOM05D004794 ORTHO05D005875 9.9e-128 460.7 357 69.7
Thecc.02G215600 Theobroma cacao HOM05D004794 ORTHO05D005875 1.7e-127 459.9 363 69.7
Atru.chr11.341 Acer truncatum HOM05D004794 ORTHO05D005875 3.8e-127 458.8 364 68.7
Aqoxy5G03876 Aquilegia oxysepala HOM05D004794 ORTHO05D005875 8.4e-127 457.6 363 66.9
CSS0006530 Camellia sinensis var. sinensis HOM05D004794 ORTHO05D005875 8.4e-127 457.6 356 69.9
Solyc05g008530.3 Solanum lycopersicum HOM05D004794 ORTHO05D005875 1.9e-126 456.4 357 69.2
PGR102G0643 Punica granatum HOM05D004794 ORTHO05D005875 2.4e-126 456.1 354 69.2
Manes.06G063100 Manihot esculenta HOM05D004794 ORTHO05D005875 3.2e-126 455.7 367 67.3
TAR622G1294 Trochodendron aralioides HOM05D004794 ORTHO05D005875 5.4e-126 454.9 298 76.8
Sopen05g004370 Solanum pennellii HOM05D004794 ORTHO05D005875 7.1e-126 454.5 357 69.2
PSO445G0020 Papaver somniferum HOM05D004794 ORTHO05D005875 1.6e-125 453.4 305 78.0
Cc11_g09270 Coffea canephora HOM05D004794 ORTHO05D005875 2.1e-125 453.0 361 68.4
Atru.chr11.334 Acer truncatum HOM05D004794 ORTHO05D005875 2.7e-125 452.6 364 68.4
PSO170G3473 Papaver somniferum HOM05D004794 ORTHO05D005875 2.7e-125 452.6 305 77.7
Ciclev10015744m.g Citrus clementina HOM05D004794 ORTHO05D005875 7.9e-125 451.1 358 68.7
MSTRG.13564 Avicennia marina HOM05D004794 ORTHO05D005875 1.3e-124 450.3 358 66.8
Gohir.D12G147200 Gossypium hirsutum HOM05D004794 ORTHO05D005875 1.3e-124 450.3 363 69.7
Gorai.008G158400 Gossypium raimondii HOM05D004794 ORTHO05D005875 1.8e-124 449.9 363 69.7
Gohir.A12G142300 Gossypium hirsutum HOM05D004794 ORTHO05D005875 3.0e-124 449.1 366 68.9
Prupe.1G320000 Prunus persica HOM05D004794 ORTHO05D005875 3.9e-124 448.7 363 68.3
Sc04g0005890 Simmondsia chinensis HOM05D004794 ORTHO05D005875 3.9e-124 448.7 326 72.7
CiPaw.05G245300 Carya illinoinensis HOM05D004794 ORTHO05D005875 5.1e-124 448.4 308 74.7
Lj6A750T92 Lonicera japonica HOM05D004794 ORTHO05D005875 5.1e-124 448.4 377 66.0
Peaxi162Scf00205g01022 Petunia axillaris HOM05D004794 ORTHO05D005875 6.7e-124 448.0 353 68.0
Manes.14G109500 Manihot esculenta HOM05D004794 ORTHO05D005875 8.7e-124 447.6 317 74.8
SGA_v2.0_scaffold376G50295 Striga asiatica HOM05D004794 ORTHO05D005875 8.7e-124 447.6 351 67.8
Oeu029170.1 Olea europaea HOM05D004794 ORTHO05D005875 1.9e-123 446.4 358 66.2
Psat6g222720 Pisum sativum HOM05D004794 ORTHO05D005875 1.9e-123 446.4 332 69.0
CANSAT01G0565 Cannabis sativa HOM05D004794 ORTHO05D005875 2.5e-123 446.0 366 65.8
GSVIVG01011805001 Vitis vinifera HOM05D004794 ORTHO05D005875 2.5e-123 446.0 355 69.3
Potri.010G117200 Populus trichocarpa HOM05D004794 ORTHO05D005875 4.3e-123 445.3 362 66.3
CAN.G1489.14 Capsicum annuum HOM05D004794 ORTHO05D005875 5.6e-123 444.9 358 67.9
CDE06G2233 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 7.4e-123 444.5 320 73.8
Eucgr.B02866 Eucalyptus grandis HOM05D004794 ORTHO05D005875 7.4e-123 444.5 309 75.4
EL10Ac6g14275 Beta vulgaris HOM05D004794 ORTHO05D005875 9.6e-123 444.1 319 73.0
Ah.03g138420 Amaranthus hybridus HOM05D004794 ORTHO05D005875 1.3e-122 443.7 338 70.1
SalBow8G5373 Salvia bowleyana HOM05D004794 ORTHO05D005875 1.6e-122 443.4 355 66.8
Hund25018 Selenicereus undatus HOM05D004794 ORTHO05D005875 1.6e-122 443.4 336 71.1
Migut.E00392 Erythranthe guttata HOM05D004794 ORTHO05D005875 2.8e-122 442.6 356 67.4
CsaV3_5G034760 Cucumis sativus L. HOM05D004794 ORTHO05D005875 3.7e-122 442.2 348 69.0
Sabra10G0086800 Salix brachista HOM05D004794 ORTHO05D005875 3.7e-122 442.2 264 84.1
Sabra10G0088400 Salix brachista HOM05D004794 ORTHO05D005875 3.7e-122 442.2 264 84.1
MELO3C012288.2 Cucumis melo HOM05D004794 ORTHO05D005875 4.8e-122 441.8 299 76.3
AUR62002773 Chenopodium quinoa HOM05D004794 ORTHO05D005875 6.2e-122 441.4 351 68.9
Glyma.10G268000 Glycine max HOM05D004794 ORTHO05D005875 1.1e-121 440.7 320 73.8
THA.LOC104805049 Tarenaya hassleriana HOM05D004794 ORTHO05D005875 1.4e-121 440.3 277 81.6
Ca_23704_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 1.8e-121 439.9 357 66.9
Ca_30211_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 1.8e-121 439.9 357 66.9
FAN22G0499 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.8e-121 439.9 351 68.9
Lalb_Chr02g0145631 Lupinus albus HOM05D004794 ORTHO05D005875 2.4e-121 439.5 302 74.2
Aa31sc79G60 Aethionema arabicum HOM05D004794 ORTHO05D005875 3.1e-121 439.1 277 81.2
Lj5g0022431 Lotus japonicus HOM05D004794 ORTHO05D005875 3.1e-121 439.1 360 66.4
Haze_00684 Corylus avellana HOM05D004794 ORTHO05D005875 4.0e-121 438.7 359 68.5
RcHm_v2.0_Chr4g0434021 Rosa chinensis HOM05D004794 ORTHO05D005875 4.0e-121 438.7 358 67.0
A02p31690 Brassica napus HOM05D004794 ORTHO05D005875 5.3e-121 438.3 350 69.4
BraA02t08175Z Brassica rapa HOM05D004794 ORTHO05D005875 5.3e-121 438.3 350 69.4
HanXRQChr17g0567091 Helianthus annuus HOM05D004794 ORTHO05D005875 5.3e-121 438.3 341 70.1
FAN07G1519 Fragaria x ananassa HOM05D004794 ORTHO05D005875 6.9e-121 438.0 356 67.4
Phvul.007G034300 Phaseolus vulgaris HOM05D004794 ORTHO05D005875 6.9e-121 438.0 316 72.2
ClCG05G022340 Citrullus lanatus HOM05D004794 ORTHO05D005875 9.0e-121 437.6 355 67.9
arahy.Tifrunner.gnm1.ann1.B80FEM Arachis hypogaea HOM05D004794 ORTHO05D005875 1.2e-120 437.2 322 71.7
arahy.Tifrunner.gnm1.ann1.9SFQ4R Arachis hypogaea HOM05D004794 ORTHO05D005875 1.5e-120 436.8 322 72.4
FAN17G0450 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.5e-120 436.8 351 68.4
Sp2g12580 Schrenkiella parvula HOM05D004794 ORTHO05D005875 1.5e-120 436.8 277 81.2
Sed0004857 Sechium edule HOM05D004794 ORTHO05D005875 1.5e-120 436.8 348 68.4
CDE07G0253 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 2.0e-120 436.4 260 84.6
MBI16_g29821_MAGBIO Magnolia biondii HOM05D004794 ORTHO05D005875 2.0e-120 436.4 288 77.8
TWI75G0950 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 2.0e-120 436.4 355 67.9
BcaB07g30424 Brassica carinata HOM05D004794 ORTHO05D005875 2.6e-120 436.0 353 69.7
BcaC06g31333 Brassica carinata HOM05D004794 ORTHO05D005875 2.6e-120 436.0 277 80.9
FvH4_4g26390 Fragaria vesca HOM05D004794 ORTHO05D005875 3.4e-120 435.6 356 67.4
FAN12G0017 Fragaria x ananassa HOM05D004794 ORTHO05D005875 3.4e-120 435.6 356 67.4
FAN12G0914 Fragaria x ananassa HOM05D004794 ORTHO05D005875 3.4e-120 435.6 356 67.4
Glyma.20G123100 Glycine max HOM05D004794 ORTHO05D005875 4.5e-120 435.3 320 72.8
Carub.0005s0009 Capsella rubella HOM05D004794 ORTHO05D005875 5.8e-120 434.9 351 70.1
MD16G1034600 Malus domestica HOM05D004794 ORTHO05D005875 5.8e-120 434.9 363 65.8
Medtr1g109080 Medicago truncatula HOM05D004794 ORTHO05D005875 5.8e-120 434.9 312 71.2
TWI79G0577 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 5.8e-120 434.9 355 68.2
AL5G10060 Arabidopsis lyrata HOM05D004794 ORTHO05D005875 7.6e-120 434.5 346 70.2
Lalb_Chr06g0165741 Lupinus albus HOM05D004794 ORTHO05D005875 9.9e-120 434.1 342 67.8
BolC2t10997H Brassica oleracea HOM05D004794 ORTHO05D005875 1.3e-119 433.7 356 68.3
CARHR143660 Cardamine hirsuta HOM05D004794 ORTHO05D005875 1.7e-119 433.3 349 70.2
Os01g0501700 Oryza sativa ssp. japonica HOM05D004794 ORTHO05D005875 1.7e-119 433.3 265 83.4
ATR0691G049 Amborella trichopoda HOM05D004794 ORTHO05D005875 2.9e-119 432.6 296 75.0
BcaC03g16998 Brassica carinata HOM05D004794 ORTHO05D005875 2.9e-119 432.6 356 68.3
MD13G1032500 Malus domestica HOM05D004794 ORTHO05D005875 2.9e-119 432.6 367 65.4
AT2G01110 Arabidopsis thaliana HOM05D004794 ORTHO05D005875 4.9e-119 431.8 349 68.8
BcaC06g34216 Brassica carinata HOM05D004794 ORTHO05D005875 6.4e-119 431.4 352 68.8
A06p44670 Brassica napus HOM05D004794 ORTHO05D005875 2.5e-118 429.5 353 68.0
C02p49070 Brassica napus HOM05D004794 ORTHO05D005875 2.5e-118 429.5 351 68.9
C07p31580 Brassica napus HOM05D004794 ORTHO05D005875 7.1e-118 427.9 357 68.1
BraA06t27340Z Brassica rapa HOM05D004794 ORTHO05D005875 7.1e-118 427.9 363 66.9
Migut.L01019 Erythranthe guttata HOM05D004794 ORTHO05D005875 1.2e-117 427.2 352 65.9
BolC7t43697H Brassica oleracea HOM05D004794 ORTHO05D005875 2.7e-117 426.0 357 67.8
Oeu048392.1 Olea europaea HOM05D004794 ORTHO05D005875 3.5e-117 425.6 385 60.3
Zm00001eb009240 Zea mays HOM05D004794 ORTHO05D005875 3.5e-117 425.6 255 83.1
HPP92_027135 Vanilla planifolia HOM05D004794 ORTHO05D005875 4.6e-117 425.2 336 67.9
HPP92_021566 Vanilla planifolia HOM05D004794 ORTHO05D005875 3.0e-116 422.5 336 67.3
EL10Ac4g08742 Beta vulgaris HOM05D004794 ORTHO05D005875 5.1e-116 421.8 336 66.4
Duzib251G0273 Durio zibethinus HOM05D004794 ORTHO05D005875 6.7e-116 421.4 359 65.2
ECA234G2688 Erigeron canadensis HOM05D004794 ORTHO05D005875 6.7e-116 421.4 276 78.3
COL.COLO4_20120 Corchorus olitorius HOM05D004794 ORTHO05D005875 6.2e-114 414.8 244 86.9
Duzib268G0539 Durio zibethinus HOM05D004794 ORTHO05D005875 9.0e-113 411.0 350 66.0
SEGI_17562 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 2.0e-112 409.8 275 76.0
Rhsim12G0088300 Rhododendron simsii HOM05D004794 ORTHO05D005875 4.5e-112 408.7 342 64.9
DCAR_030186 Daucus carota HOM05D004794 ORTHO05D005875 2.9e-111 406.0 225 91.1
Pp3c3_36440 Physcomitrium patens HOM05D004794 ORTHO05D005875 4.2e-110 402.1 281 71.9
AUR62037257 Chenopodium quinoa HOM05D004794 ORTHO05D005875 1.2e-109 400.6 434 55.3
SalBow8G4147 Salvia bowleyana HOM05D004794 ORTHO05D005875 3.0e-108 396.0 385 57.9
HPP92_020138 Vanilla planifolia HOM05D004794 ORTHO05D005875 3.9e-108 395.6 279 73.5
SMO119G0095 Selaginella moellendorffii HOM05D004794 ORTHO05D005875 5.1e-108 395.2 252 79.0
Pp3c8_3800 Physcomitrium patens HOM05D004794 ORTHO05D005875 3.3e-107 392.5 281 71.9
Mapoly0010s0061 Marchantia polymorpha HOM05D004794 ORTHO05D005875 1.6e-106 390.2 272 73.5
AagrBONN_evm.TU.Sc2ySwM_368.2774 Anthoceros agrestis HOM05D004794 ORTHO05D005875 1.4e-105 387.1 252 78.6
Thhalv10000946m.g Eutrema salsugineum HOM05D004794 ORTHO05D005875 1.0e-103 380.9 360 63.6
CBR_g19219 Chara braunii HOM05D004794 ORTHO05D005875 1.4e-102 377.1 245 76.7
PRCOL_00000588 Prasinoderma coloniale HOM05D004794 ORTHO05D005875 4.1e-97 359.0 259 66.0
TPR.G4856 Trifolium pratense HOM05D004794 ORTHO05D005875 5.3e-97 358.6 267 67.8
MCO02G003 Micromonas commoda HOM05D004794 ORTHO05D005875 2.6e-91 339.7 245 70.6
Zm00001eb399680 Zea mays HOM05D004794 ORTHO05D005875 5.7e-91 338.6 263 67.7
Cre03.g145887 Chlamydomonas reinhardtii HOM05D004794 ORTHO05D005875 3.1e-89 332.8 261 65.9
Oeu022847.1 Olea europaea HOM05D004794 ORTHO05D005875 1.3e-87 327.4 295 64.4
VMungo0720G1627 Vigna mungo HOM05D004794 ORTHO05D005875 1.4e-76 290.8 357 51.5
unitig_8.g3987 Utricularia gibba HOM05D000722 ORTHO05D000590 2.0e-64 250.4 248 56.9
A09p23220 Brassica napus HOM05D004794 ORTHO05D005875 9.8e-59 231.5 153 77.1
BraA09t37925Z Brassica rapa HOM05D004794 ORTHO05D005875 4.9e-58 229.2 153 76.5
BcaC03g16992 Brassica carinata HOM05D004794 ORTHO05D005875 9.5e-54 214.9 149 71.8
BolC2t10985H Brassica oleracea HOM05D004794 ORTHO05D005875 9.5e-54 214.9 149 71.8
Cpa.g.sc65.92 Carica papaya HOM05D004794 ORTHO05D005875 6.6e-47 192.2 108 91.7
SEGI_30482 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 6.8e-36 155.6 104 76.9
SEGI_31512 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 1.5e-35 154.5 99 79.8
C09p29960 Brassica napus HOM05D004794 ORTHO05D039171 1.9e-33 147.5 128 62.5
SEGI_19547 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 2.5e-30 137.1 112 62.5
BcaC04g21603 Brassica carinata HOM05D004794 ORTHO05D039171 3.8e-26 123.2 97 70.1
unitig_8.g3988 Utricularia gibba HOM05D004794 ORTHO05D005875 2.1e-21 107.5 61 88.5
BolC9t55859H Brassica oleracea HOM05D004794 ORTHO05D005875 3.6e-21 106.7 64 87.5


User provided reference genes

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