Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0012691 Helianthus annuus HOM05D000141 ORTHO05D001968 1.7e-35 152.1 76 100.0
HanXRQChr08g0213061 Helianthus annuus HOM05D000141 ORTHO05D001968 1.0e-32 142.9 75 94.7
HanXRQChr15g0495691 Helianthus annuus HOM05D000141 ORTHO05D001968 5.2e-29 130.6 68 95.6
Lsat_1_v5_gn_7_108240 Lactuca sativa HOM05D000141 ORTHO05D001968 1.1e-26 122.9 68 88.2
HanXRQChr11g0333041 Helianthus annuus HOM05D000141 ORTHO05D001968 1.5e-15 85.9 81 60.5
CSS0022316 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D001968 3.3e-15 84.7 68 67.6
CSS0030624 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D001968 3.3e-15 84.7 68 67.6
HanXRQChr03g0076311 Helianthus annuus HOM05D000141 ORTHO05D001968 7.3e-15 83.6 68 63.2
Lsat_1_v5_gn_0_6961 Lactuca sativa HOM05D007317 ORTHO05D001968 9.5e-15 83.2 68 64.7
Lj1C862T8 Lonicera japonica HOM05D000141 ORTHO05D001968 2.8e-14 81.6 68 64.7
Actinidia09956 Actinidia chinensis HOM05D000141 ORTHO05D001968 1.1e-13 79.7 68 63.2
CiPaw.11G182900 Carya illinoinensis HOM05D000141 ORTHO05D001968 1.1e-13 79.7 68 64.7
QL08p013485 Quercus lobata HOM05D000141 ORTHO05D001968 1.1e-13 79.7 68 64.7
QL08p013805 Quercus lobata HOM05D000141 ORTHO05D001968 1.1e-13 79.7 68 64.7
vmacro11772 Vaccinium macrocarpon HOM05D000141 ORTHO05D001968 3.1e-13 78.2 70 62.9
Cfa020436 Carpinus fangiana HOM05D000141 ORTHO05D001968 5.2e-13 77.4 68 63.2
Haze_09592 Corylus avellana HOM05D000141 ORTHO05D001968 5.2e-13 77.4 68 63.2
Actinidia05130 Actinidia chinensis HOM05D000141 ORTHO05D001968 1.5e-12 75.9 68 61.8
ClCG05G014830 Citrullus lanatus HOM05D000141 ORTHO05D001968 2.0e-12 75.5 69 58.0
Ciclev10007548m.g Citrus clementina HOM05D000141 ORTHO05D001968 5.8e-12 73.9 68 61.8
GSVIVG01014585001 Vitis vinifera HOM05D000141 ORTHO05D001968 5.8e-12 73.9 68 61.8
Prupe.4G201200 Prunus persica HOM05D000141 ORTHO05D001968 7.6e-12 73.6 68 60.3
Gohir.A01G073700 Gossypium hirsutum HOM05D000141 ORTHO05D001968 9.9e-12 73.2 68 57.4
Gohir.D01G060300 Gossypium hirsutum HOM05D000141 ORTHO05D001968 9.9e-12 73.2 68 57.4
Gorai.002G081700 Gossypium raimondii HOM05D000141 ORTHO05D001968 9.9e-12 73.2 68 57.4
Sed0005977 Sechium edule HOM05D000141 ORTHO05D001968 9.9e-12 73.2 69 59.4
CiPaw.12G125900 Carya illinoinensis HOM05D000141 ORTHO05D001968 1.3e-11 72.8 68 61.8
MSTRG.12951 Avicennia marina HOM05D000141 ORTHO05D001968 4.9e-11 70.9 53 67.9
MELO3C018132.2 Cucumis melo HOM05D000141 ORTHO05D001968 4.9e-11 70.9 68 55.9
Atru.chr2.3181 Acer truncatum HOM05D000141 ORTHO05D001968 6.4e-11 70.5 68 58.8
Atru.chr2.3191 Acer truncatum HOM05D000141 ORTHO05D001968 6.4e-11 70.5 68 58.8
Duzib170G0721 Durio zibethinus HOM05D000141 ORTHO05D001968 6.4e-11 70.5 68 55.9
Duzib213G0308 Durio zibethinus HOM05D000141 ORTHO05D001968 6.4e-11 70.5 68 55.9
MD11G1228000 Malus domestica HOM05D000141 ORTHO05D001968 8.4e-11 70.1 68 58.8
COL.COLO4_09555 Corchorus olitorius HOM05D000141 ORTHO05D001968 1.4e-10 69.3 68 57.4
CsaV3_3G022850 Cucumis sativus L. HOM05D000141 ORTHO05D001968 1.4e-10 69.3 68 54.4
Thecc.07G055200 Theobroma cacao HOM05D000141 ORTHO05D001968 1.4e-10 69.3 68 54.4
Nn1g03714 Nelumbo nucifera HOM05D000141 ORTHO05D001968 2.4e-10 68.6 68 57.4
MSTRG.14411 Avicennia marina HOM05D000141 ORTHO05D001968 4.1e-10 67.8 62 58.1
Sabra16G0283000 Salix brachista HOM05D000141 ORTHO05D001968 5.4e-10 67.4 68 58.8
Manes.15G077400 Manihot esculenta HOM05D000141 ORTHO05D001968 7.1e-10 67.0 68 55.9
Cpa.g.sc97.81 Carica papaya HOM05D000141 ORTHO05D001968 1.6e-09 65.9 68 51.5
Gohir.A04G022500 Gossypium hirsutum HOM05D000141 ORTHO05D001968 1.6e-09 65.9 68 51.5
Gohir.D05G364900 Gossypium hirsutum HOM05D000141 ORTHO05D001968 1.6e-09 65.9 68 51.5
Gorai.009G427400 Gossypium raimondii HOM05D000141 ORTHO05D001968 1.6e-09 65.9 68 51.5
MD03G1212900 Malus domestica HOM05D000141 ORTHO05D001968 1.6e-09 65.9 68 55.9
Psat7g012920 Pisum sativum HOM05D000141 ORTHO05D001968 4.6e-09 64.3 53 62.3
CANSAT11G0716 Cannabis sativa HOM05D000141 ORTHO05D001968 6.0e-09 63.9 68 52.9
Eucgr.F03419 Eucalyptus grandis HOM05D000141 ORTHO05D001968 6.0e-09 63.9 53 60.4
Lj3g0002870 Lotus japonicus HOM05D000141 ORTHO05D001968 6.0e-09 63.9 64 56.2
Oeu062622.1 Olea europaea HOM05D000141 ORTHO05D001968 6.0e-09 63.9 53 58.5
Oeu007616.1 Olea europaea HOM05D000141 ORTHO05D001968 7.8e-09 63.5 53 58.5
TPR.G25906 Trifolium pratense HOM05D000141 ORTHO05D001968 7.8e-09 63.5 53 60.4
Glyma.13G286400 Glycine max HOM05D000141 ORTHO05D001968 1.0e-08 63.2 68 54.4
HanXRQChr13g0407651 Helianthus annuus HOM05D000141 ORTHO05D001968 1.0e-08 63.2 63 54.0
Potri.001G416300 Populus trichocarpa HOM05D000141 ORTHO05D001968 1.0e-08 63.2 68 55.9
Lalb_Chr22g0357111 Lupinus albus HOM05D000141 ORTHO05D001968 1.3e-08 62.8 65 58.5
Phvul.005G090700 Phaseolus vulgaris HOM05D000141 ORTHO05D001968 1.3e-08 62.8 68 55.9
Potri.011G131900 Populus trichocarpa HOM05D000141 ORTHO05D001968 1.3e-08 62.8 68 54.4
SGA_v2.0_scaffold34G13954 Striga asiatica HOM05D000141 ORTHO05D001968 1.3e-08 62.8 59 57.6
Medtr4g081390 Medicago truncatula HOM05D000141 ORTHO05D001968 1.7e-08 62.4 53 60.4
Nn1g06957 Nelumbo nucifera HOM05D000141 ORTHO05D001968 1.7e-08 62.4 68 48.5
Actinidia10702 Actinidia chinensis HOM05D000141 ORTHO05D001968 2.3e-08 62.0 66 50.0
Haze_06688 Corylus avellana HOM05D000141 ORTHO05D001968 2.3e-08 62.0 68 57.4
Oeu013860.1 Olea europaea HOM05D000141 ORTHO05D001968 2.3e-08 62.0 61 54.1
Glyma.12G215200 Glycine max HOM05D000141 ORTHO05D001968 3.0e-08 61.6 68 52.9
DCAR_012724 Daucus carota HOM05D000141 ORTHO05D001968 3.9e-08 61.2 68 57.4
Phvul.011G141500 Phaseolus vulgaris HOM05D000141 ORTHO05D001968 3.9e-08 61.2 69 55.1
VMungo1127G0154 Vigna mungo HOM05D000141 ORTHO05D001968 3.9e-08 61.2 69 55.1
TWI38G0006 Tripterygium wilfordii HOM05D000141 ORTHO05D001968 5.1e-08 60.8 53 60.4
VMungo1080G0507 Vigna mungo HOM05D000141 ORTHO05D001968 5.1e-08 60.8 68 52.9
Lalb_Chr19g0134711 Lupinus albus HOM05D000141 ORTHO05D001968 6.6e-08 60.5 52 59.6
TWI39G1256 Tripterygium wilfordii HOM05D000141 ORTHO05D001968 6.6e-08 60.5 53 60.4
Ciclev10014313m.g Citrus clementina HOM05D000141 ORTHO05D001968 8.7e-08 60.1 55 60.0
TAR629G2130 Trochodendron aralioides HOM05D000141 ORTHO05D001968 1.1e-07 59.7 68 51.5
Cfa016410 Carpinus fangiana HOM05D000141 ORTHO05D001968 1.5e-07 59.3 68 55.9
Glyma.12G136600 Glycine max HOM05D000141 ORTHO05D001968 1.5e-07 59.3 69 55.1
Actinidia35312 Actinidia chinensis HOM05D000141 ORTHO05D001968 1.9e-07 58.9 63 50.8
FAN16G2147 Fragaria x ananassa HOM05D000141 ORTHO05D001968 1.9e-07 58.9 68 50.0
Migut.H01865 Erythranthe guttata HOM05D000141 ORTHO05D001968 2.5e-07 58.5 53 56.6
FvH4_3g21681 Fragaria vesca HOM05D000141 ORTHO05D001968 2.5e-07 58.5 68 50.0
FAN11G1924 Fragaria x ananassa HOM05D000141 ORTHO05D001968 2.5e-07 58.5 68 50.0
FAN21G3918 Fragaria x ananassa HOM05D000141 ORTHO05D001968 2.5e-07 58.5 68 50.0
RcHm_v2.0_Chr5g0037181 Rosa chinensis HOM05D000141 ORTHO05D001968 2.5e-07 58.5 68 50.0
arahy.Tifrunner.gnm1.ann1.80N2SK Arachis hypogaea HOM05D000141 ORTHO05D001968 3.3e-07 58.2 71 54.9
arahy.Tifrunner.gnm1.ann1.8PC3NJ Arachis hypogaea HOM05D000141 ORTHO05D001968 3.3e-07 58.2 71 54.9
FAN25G3139 Fragaria x ananassa HOM05D000141 ORTHO05D001968 3.3e-07 58.2 68 48.5
TWI38G0999 Tripterygium wilfordii HOM05D000141 ORTHO05D001968 3.3e-07 58.2 53 56.6
C02p16790 Brassica napus HOM05D000141 ORTHO05D001968 4.3e-07 57.8 69 52.2
BolC2t07783H Brassica oleracea HOM05D000141 ORTHO05D001968 4.3e-07 57.8 69 52.2
PGSC0003DMG400021807 Solanum tuberosum HOM05D000141 ORTHO05D001968 5.6e-07 57.4 68 51.5
Glyma.06G266500 Glycine max HOM05D000141 ORTHO05D001968 7.3e-07 57.0 69 55.1
MSTRG.6886 Avicennia marina HOM05D000141 ORTHO05D001968 9.6e-07 56.6 53 54.7
Dinv18940 Davidia involucrata HOM05D000141 ORTHO05D001968 9.6e-07 56.6 69 52.2
SalBow1G6387 Salvia bowleyana HOM05D000141 ORTHO05D001968 9.6e-07 56.6 58 56.9
SalBow8G2986 Salvia bowleyana HOM05D000141 ORTHO05D001968 9.6e-07 56.6 58 56.9
BraA02t06082Z Brassica rapa HOM05D000141 ORTHO05D001968 1.2e-06 56.2 52 55.8
CAN.G262.20 Capsicum annuum HOM05D000141 ORTHO05D001968 1.6e-06 55.8 68 47.1
Lalb_Chr01g0006161 Lupinus albus HOM05D000141 ORTHO05D001968 1.6e-06 55.8 68 48.5
Lj3g0020976 Lotus japonicus HOM05D000141 ORTHO05D001968 2.1e-06 55.5 69 53.6
Cc05_g13160 Coffea canephora HOM05D000141 ORTHO05D001968 2.8e-06 55.1 53 52.8
THA.LOC104813408 Tarenaya hassleriana HOM05D000141 ORTHO05D001968 2.8e-06 55.1 68 48.5
GSVIVG01007336001 Vitis vinifera HOM05D000141 ORTHO05D001968 2.8e-06 55.1 53 54.7
arahy.Tifrunner.gnm1.ann1.QWU62Y Arachis hypogaea HOM05D000141 ORTHO05D001968 3.6e-06 54.7 71 52.1
arahy.Tifrunner.gnm1.ann1.YUGY0X Arachis hypogaea HOM05D000141 ORTHO05D001968 3.6e-06 54.7 71 52.1
A02p10110 Brassica napus HOM05D000141 ORTHO05D001968 3.6e-06 54.7 70 50.0
Ca_01759_v3 Cicer arietinum L. HOM05D000141 ORTHO05D001968 3.6e-06 54.7 70 52.9
Nitab4.5_0000092g0080 Nicotiana tabacum HOM05D000141 ORTHO05D001968 3.6e-06 54.7 69 47.8
Solyc12g005260.1 Solanum lycopersicum HOM05D000141 ORTHO05D001968 3.6e-06 54.7 66 51.5
Lalb_Chr14g0366051 Lupinus albus HOM05D000141 ORTHO05D001968 4.7e-06 54.3 65 52.3
Sc03g0009160 Simmondsia chinensis HOM05D000141 ORTHO05D001968 4.7e-06 54.3 73 49.3
CAN.G337.155 Capsicum annuum HOM05D000141 ORTHO05D001968 6.2e-06 53.9 53 52.8
Dinv17848 Davidia involucrata HOM05D000141 ORTHO05D001968 6.2e-06 53.9 54 55.6
Solyc07g064030.4 Solanum lycopersicum HOM05D000141 ORTHO05D001968 6.2e-06 53.9 68 51.5
Sopen07g032170 Solanum pennellii HOM05D000141 ORTHO05D001968 6.2e-06 53.9 68 51.5
Sopen12g001240 Solanum pennellii HOM05D000141 ORTHO05D001968 6.2e-06 53.9 68 50.0
Thhalv10012765m.g Eutrema salsugineum HOM05D000141 ORTHO05D001968 8.1e-06 53.5 52 53.8
Sp6g16630 Schrenkiella parvula HOM05D000141 ORTHO05D001968 8.1e-06 53.5 52 53.8


User provided reference genes

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