Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0012051 Helianthus annuus HOM05D003804 ORTHO05D004350 6.6e-87 323.9 155 100.0
HanXRQChr07g0194371 Helianthus annuus HOM05D003804 ORTHO05D004350 3.0e-71 271.9 211 67.8
ECA238G1424 Erigeron canadensis HOM05D003804 ORTHO05D004350 2.0e-59 232.6 211 58.8
ECA233G2677 Erigeron canadensis HOM05D003804 ORTHO05D004350 9.9e-51 203.8 185 55.1
Lsat_1_v5_gn_8_2841 Lactuca sativa HOM05D003804 ORTHO05D004350 1.4e-49 199.9 176 57.4
vmacro10357 Vaccinium macrocarpon HOM05D003804 ORTHO05D004350 2.1e-48 196.1 141 67.4
Dinv14606 Davidia involucrata HOM05D003804 ORTHO05D004350 1.1e-46 190.3 176 56.8
HanXRQChr08g0225481 Helianthus annuus HOM05D003804 ORTHO05D004350 1.3e-45 186.8 175 53.7
Rhsim09G0137900 Rhododendron simsii HOM05D003804 ORTHO05D004350 1.8e-44 183.0 177 54.2
Dinv08268 Davidia involucrata HOM05D003804 ORTHO05D004350 2.4e-44 182.6 177 54.8
CSS0006152 Camellia sinensis var. sinensis HOM05D003804 ORTHO05D004350 4.0e-44 181.8 176 54.0
GSVIVG01023535001 Vitis vinifera HOM05D003804 ORTHO05D004350 4.0e-44 181.8 187 52.9
Lj2A40T58 Lonicera japonica HOM05D003804 ORTHO05D004350 1.2e-43 180.3 211 49.8
Duzib177G0700 Durio zibethinus HOM05D003804 ORTHO05D004350 4.9e-42 174.9 169 52.7
CSS0050159 Camellia sinensis var. sinensis HOM05D003804 ORTHO05D004350 1.4e-41 173.3 176 51.1
MBI10_g37182_MAGBIO Magnolia biondii HOM05D003804 ORTHO05D004350 1.9e-41 172.9 190 48.9
Potri.013G049100 Populus trichocarpa HOM05D003804 ORTHO05D004350 1.9e-41 172.9 183 48.6
CSS0024163 Camellia sinensis var. sinensis HOM05D003804 ORTHO05D004350 7.1e-41 171.0 176 50.6
Duzib106G1801 Durio zibethinus HOM05D003804 ORTHO05D004350 7.1e-41 171.0 180 50.0
COL.COLO4_15533 Corchorus olitorius HOM05D003804 ORTHO05D004350 1.2e-40 170.2 180 47.8
Sabra13G0045400 Salix brachista HOM05D003804 ORTHO05D004350 1.6e-40 169.9 179 49.2
TAR636G0278 Trochodendron aralioides HOM05D003804 ORTHO05D004350 1.6e-40 169.9 183 49.7
Peaxi162Scf00015g03111 Petunia axillaris HOM05D003804 ORTHO05D004350 2.1e-40 169.5 171 49.1
Cfa006383 Carpinus fangiana HOM05D003804 ORTHO05D004350 2.7e-40 169.1 181 50.3
CSS0040175 Camellia sinensis var. sinensis HOM05D003804 ORTHO05D004350 6.0e-40 167.9 184 48.4
Actinidia40003 Actinidia chinensis HOM05D003804 ORTHO05D004350 1.0e-39 167.2 177 50.3
CiPaw.07G070900 Carya illinoinensis HOM05D003804 ORTHO05D004350 1.0e-39 167.2 186 48.9
Glyma.03G249500 Glycine max HOM05D003804 ORTHO05D004350 1.7e-39 166.4 186 48.9
Lj1g0028056 Lotus japonicus HOM05D003804 ORTHO05D004350 1.7e-39 166.4 186 48.9
arahy.Tifrunner.gnm1.ann1.PMT11X Arachis hypogaea HOM05D003804 ORTHO05D004350 2.3e-39 166.0 184 47.3
arahy.Tifrunner.gnm1.ann1.A208ZV Arachis hypogaea HOM05D003804 ORTHO05D004350 3.9e-39 165.2 184 47.3
Cc02_g08970 Coffea canephora HOM05D003804 ORTHO05D004350 3.9e-39 165.2 187 47.6
Lalb_Chr04g0262141 Lupinus albus HOM05D003804 ORTHO05D004350 5.1e-39 164.9 186 48.4
Glyma.19G247000 Glycine max HOM05D003804 ORTHO05D004350 6.6e-39 164.5 186 48.9
Thecc.05G266900 Theobroma cacao HOM05D003804 ORTHO05D004350 6.6e-39 164.5 178 51.1
Prupe.6G352300 Prunus persica HOM05D003804 ORTHO05D004350 8.7e-39 164.1 180 50.0
PGR004G0836 Punica granatum HOM05D003804 ORTHO05D004350 8.7e-39 164.1 187 46.5
Rhsim05G0175100 Rhododendron simsii HOM05D003804 ORTHO05D004350 1.1e-38 163.7 174 50.6
Gohir.D13G172400 Gossypium hirsutum HOM05D003804 ORTHO05D004350 1.5e-38 163.3 182 48.4
Gorai.013G188300 Gossypium raimondii HOM05D003804 ORTHO05D004350 2.5e-38 162.5 182 48.4
Manes.08G141400 Manihot esculenta HOM05D003804 ORTHO05D004350 2.5e-38 162.5 170 51.8
Solyc04g009920.3 Solanum lycopersicum HOM05D003804 ORTHO05D004350 2.5e-38 162.5 176 46.6
Sopen04g005060 Solanum pennellii HOM05D003804 ORTHO05D004350 2.5e-38 162.5 176 46.6
Gohir.A13G161600 Gossypium hirsutum HOM05D003804 ORTHO05D004350 5.6e-38 161.4 182 48.4
MBI07_g30495_MAGBIO Magnolia biondii HOM05D003804 ORTHO05D004350 5.6e-38 161.4 195 43.1
Phvul.006G104100 Phaseolus vulgaris HOM05D003804 ORTHO05D004350 5.6e-38 161.4 186 46.8
SalBow3G4606 Salvia bowleyana HOM05D003804 ORTHO05D004350 5.6e-38 161.4 186 46.2
MD04G1232600 Malus domestica HOM05D003804 ORTHO05D004350 7.3e-38 161.0 181 49.2
Peaxi162Scf00135g00416 Petunia axillaris HOM05D003804 ORTHO05D004350 7.3e-38 161.0 170 47.1
QL03p029246 Quercus lobata HOM05D003804 ORTHO05D004350 7.3e-38 161.0 185 46.5
TWI32G1243 Tripterygium wilfordii HOM05D003804 ORTHO05D004350 7.3e-38 161.0 181 47.5
CAN.G1609.2 Capsicum annuum HOM05D003804 ORTHO05D004350 9.6e-38 160.6 170 48.2
Ca_09447_v3 Cicer arietinum L. HOM05D003804 ORTHO05D004350 9.6e-38 160.6 186 47.8
Haze_04395 Corylus avellana HOM05D003804 ORTHO05D004350 9.6e-38 160.6 181 49.2
Nitab4.5_0000687g0070 Nicotiana tabacum HOM05D006502 ORTHO05D004350 9.6e-38 160.6 173 48.0
Nitab4.5_0001372g0080 Nicotiana tabacum HOM05D003804 ORTHO05D004350 9.6e-38 160.6 171 48.5
Oeu016029.1 Olea europaea HOM05D003804 ORTHO05D004350 9.6e-38 160.6 188 45.7
Sed0002107 Sechium edule HOM05D003804 ORTHO05D004350 9.6e-38 160.6 175 48.6
Nitab4.5_0003768g0060 Nicotiana tabacum HOM05D003804 ORTHO05D004350 1.3e-37 160.2 184 45.7
Migut.F00805 Erythranthe guttata HOM05D003804 ORTHO05D004350 1.6e-37 159.8 187 43.9
Lalb_Chr06g0168201 Lupinus albus HOM05D003804 ORTHO05D004350 2.1e-37 159.5 196 44.9
PGSC0003DMG400011479 Solanum tuberosum HOM05D003804 ORTHO05D004350 2.1e-37 159.5 176 46.6
RcHm_v2.0_Chr3g0449231 Rosa chinensis HOM05D003804 ORTHO05D004350 2.8e-37 159.1 180 50.0
TWI60G0892 Tripterygium wilfordii HOM05D003804 ORTHO05D004350 2.8e-37 159.1 187 45.5
Lj5g0014193 Lotus japonicus HOM05D003804 ORTHO05D004350 4.8e-37 158.3 186 47.3
SGA_v2.0_scaffold111G31426 Striga asiatica HOM05D003804 ORTHO05D004350 4.8e-37 158.3 187 44.9
TPR.G6978 Trifolium pratense HOM05D003804 ORTHO05D004350 4.8e-37 158.3 184 47.3
VMungo0540G0271 Vigna mungo HOM05D003804 ORTHO05D004350 6.2e-37 157.9 184 46.2
Psat0s3161g0200 Pisum sativum HOM05D003804 ORTHO05D004350 1.1e-36 157.1 185 45.9
MD12G1250100 Malus domestica HOM05D003804 ORTHO05D004350 1.8e-36 156.4 181 48.1
CANSAT56G0982 Cannabis sativa HOM05D003804 ORTHO05D004350 3.1e-36 155.6 174 47.1
PSO063G7164 Papaver somniferum HOM05D003804 ORTHO05D004350 4.0e-36 155.2 184 44.6
ClCG11G010310 Citrullus lanatus HOM05D003804 ORTHO05D004350 5.3e-36 154.8 175 44.6
CsaV3_2G010010 Cucumis sativus L. HOM05D003804 ORTHO05D004350 5.3e-36 154.8 178 46.1
Nitab4.5_0001268g0010 Nicotiana tabacum HOM05D003804 ORTHO05D004350 6.9e-36 154.5 170 46.5
Phvul.007G116100 Phaseolus vulgaris HOM05D003804 ORTHO05D004350 6.9e-36 154.5 172 49.4
Ciclev10031149m.g Citrus clementina HOM05D003804 ORTHO05D004350 9.0e-36 154.1 188 44.1
PSO017G7263 Papaver somniferum HOM05D003804 ORTHO05D004350 9.0e-36 154.1 184 44.0
FAN09G3890 Fragaria x ananassa HOM05D003804 ORTHO05D004350 1.2e-35 153.7 181 47.0
Oeu012230.1 Olea europaea HOM05D003804 ORTHO05D004350 1.2e-35 153.7 189 43.4
TAR365G0644 Trochodendron aralioides HOM05D003804 ORTHO05D004350 1.2e-35 153.7 182 46.2
Sc09g0004190 Simmondsia chinensis HOM05D003804 ORTHO05D004350 1.5e-35 153.3 194 43.3
Sopen05g033500 Solanum pennellii HOM05D003804 ORTHO05D004350 1.5e-35 153.3 169 45.6
Solyc05g055040.3 Solanum lycopersicum HOM05D003804 ORTHO05D004350 2.6e-35 152.5 169 44.4
VMungo0720G0320 Vigna mungo HOM05D003804 ORTHO05D004350 2.6e-35 152.5 195 45.1
Sed0018274 Sechium edule HOM05D003804 ORTHO05D004350 3.4e-35 152.1 175 45.1
arahy.Tifrunner.gnm1.ann1.Y4X76M Arachis hypogaea HOM05D003804 ORTHO05D004350 5.8e-35 151.4 216 39.8
FAN02G4114 Fragaria x ananassa HOM05D003804 ORTHO05D004350 7.6e-35 151.0 181 47.0
FAN05G4825 Fragaria x ananassa HOM05D003804 ORTHO05D004350 7.6e-35 151.0 181 47.0
CAN.G1465.5 Capsicum annuum HOM05D003804 ORTHO05D004350 9.9e-35 150.6 171 46.8
PGSC0003DMG400023500 Solanum tuberosum HOM05D003804 ORTHO05D004350 1.7e-34 149.8 169 45.0
Lsat_1_v5_gn_2_107981 Lactuca sativa HOM05D003804 ORTHO05D004350 2.2e-34 149.4 176 50.0
Medtr7g115460 Medicago truncatula HOM05D003804 ORTHO05D004350 2.2e-34 149.4 185 44.9
Psat6g144120 Pisum sativum HOM05D003804 ORTHO05D004350 2.2e-34 149.4 185 44.9
FAN14G2706 Fragaria x ananassa HOM05D003804 ORTHO05D004350 2.9e-34 149.1 180 46.7
FvH4_6g01530 Fragaria vesca HOM05D003804 ORTHO05D004350 3.8e-34 148.7 180 46.7
FAN05G4636 Fragaria x ananassa HOM05D003804 ORTHO05D004350 3.8e-34 148.7 180 46.1
FAN14G4672 Fragaria x ananassa HOM05D003804 ORTHO05D004350 3.8e-34 148.7 180 46.7
TPR.G26623 Trifolium pratense HOM05D003804 ORTHO05D004350 3.8e-34 148.7 186 45.2
Ah.06g191850 Amaranthus hybridus HOM05D003804 ORTHO05D004350 6.4e-34 147.9 197 41.6
Cpa.g.sc51.6 Carica papaya HOM05D003804 ORTHO05D004350 6.4e-34 147.9 187 43.3
Medtr1g080460 Medicago truncatula HOM05D003804 ORTHO05D004350 6.4e-34 147.9 186 46.2
MSTRG.27378 Avicennia marina HOM05D003804 ORTHO05D004350 1.4e-33 146.7 213 40.8
Zm00001eb426690 Zea mays HOM05D003804 ORTHO05D004350 1.4e-33 146.7 175 44.6
AUR62040937 Chenopodium quinoa HOM05D003804 ORTHO05D004350 1.9e-33 146.4 194 42.3
Glyma.20G226800 Glycine max HOM05D003804 ORTHO05D004350 1.9e-33 146.4 179 45.3
Ca_10028_v3 Cicer arietinum L. HOM05D003804 ORTHO05D004350 2.4e-33 146.0 185 44.9
AUR62004854 Chenopodium quinoa HOM05D003804 ORTHO05D004350 3.2e-33 145.6 196 41.3
BcaB01g04900 Brassica carinata HOM05D003804 ORTHO05D004350 4.2e-33 145.2 188 40.4
Carub.0003s0354 Capsella rubella HOM05D003804 ORTHO05D004350 5.4e-33 144.8 196 40.3
Aqoxy2G03639 Aquilegia oxysepala HOM05D003804 ORTHO05D004350 1.2e-32 143.7 186 41.9
arahy.Tifrunner.gnm1.ann1.Y446PZ Arachis hypogaea HOM05D003804 ORTHO05D004350 1.2e-32 143.7 222 37.4
CARHR078510 Cardamine hirsuta HOM05D003804 ORTHO05D004350 1.2e-32 143.7 179 42.5
Os02g0624400 Oryza sativa ssp. japonica HOM05D003804 ORTHO05D004350 1.6e-32 143.3 188 40.4
Sp3g03220 Schrenkiella parvula HOM05D003804 ORTHO05D004350 1.6e-32 143.3 171 43.3
ATR0801G001 Amborella trichopoda HOM05D003804 ORTHO05D004350 2.1e-32 142.9 191 41.4
Thhalv10020458m.g Eutrema salsugineum HOM05D003804 ORTHO05D004350 4.6e-32 141.7 171 42.1
Gohir.A11G244900 Gossypium hirsutum HOM05D003804 ORTHO05D004350 4.6e-32 141.7 160 49.4
BraA01t04524Z Brassica rapa HOM05D003804 ORTHO05D004350 6.0e-32 141.4 181 42.0
BcaC09g47809 Brassica carinata HOM05D003804 ORTHO05D004350 1.0e-31 140.6 181 40.9
THA.LOC104827281 Tarenaya hassleriana HOM05D003804 ORTHO05D004350 1.0e-31 140.6 172 41.9
Thhalv10013196m.g Eutrema salsugineum HOM05D003804 ORTHO05D004350 2.3e-31 139.4 183 41.0
A03p08890 Brassica napus HOM05D003804 ORTHO05D004350 3.0e-31 139.0 178 41.6
AT5G18480 Arabidopsis thaliana HOM05D003804 ORTHO05D004350 3.9e-31 138.7 165 44.2
BolC1t05753H Brassica oleracea HOM05D003804 ORTHO05D004350 3.9e-31 138.7 181 40.9
EL10Ac4g09070 Beta vulgaris HOM05D003804 ORTHO05D004350 5.1e-31 138.3 196 40.3
BcaNung04819 Brassica carinata HOM05D003804 ORTHO05D004350 5.1e-31 138.3 181 40.3
CARHR194530 Cardamine hirsuta HOM05D003804 ORTHO05D004350 8.7e-31 137.5 180 41.1
C03p10370 Brassica napus HOM05D003804 ORTHO05D004350 1.1e-30 137.1 176 41.5
BraA03t10215Z Brassica rapa HOM05D003804 ORTHO05D004350 1.1e-30 137.1 176 41.5
A02p04940 Brassica napus HOM05D003804 ORTHO05D004350 1.5e-30 136.7 185 40.5
BolC3t13517H Brassica oleracea HOM05D003804 ORTHO05D004350 1.5e-30 136.7 176 39.8
AL6G29740 Arabidopsis lyrata HOM05D003804 ORTHO05D004350 2.5e-30 136.0 165 43.0
BraA02t05453Z Brassica rapa HOM05D003804 ORTHO05D004350 2.5e-30 136.0 175 40.6
Sp6g25840 Schrenkiella parvula HOM05D003804 ORTHO05D004350 2.5e-30 136.0 167 41.9
Os04g0517400 Oryza sativa ssp. japonica HOM05D003804 ORTHO05D004350 4.3e-30 135.2 175 40.0
C02p09920 Brassica napus HOM05D003804 ORTHO05D004350 5.6e-30 134.8 175 42.3
BcaC03g13603 Brassica carinata HOM05D003804 ORTHO05D004350 1.3e-29 133.7 175 42.9
A01p40890 Brassica napus HOM05D003804 ORTHO05D004350 1.3e-29 133.7 181 40.3
BNapus_Darmor_BZH_scaffold_78p00820 Brassica napus HOM05D003804 ORTHO05D004350 1.3e-29 133.7 181 40.3
Aa31LG11G11120 Aethionema arabicum HOM05D003804 ORTHO05D004350 3.7e-29 132.1 181 40.3
Aa31LG5G14820 Aethionema arabicum HOM05D003804 ORTHO05D004350 1.1e-28 130.6 170 40.0
BolC2t06899H Brassica oleracea HOM05D003804 ORTHO05D004350 1.4e-28 130.2 175 41.7
CDE02G2550 Ceratophyllum demersum HOM05D003804 ORTHO05D004350 1.4e-28 130.2 193 39.9
BcaB05g23331 Brassica carinata HOM05D003804 ORTHO05D004350 2.4e-28 129.4 172 43.0
DCAR_023877 Daucus carota HOM05D003804 ORTHO05D004350 3.1e-28 129.0 147 46.3
Carub.0006s1676 Capsella rubella HOM05D003804 ORTHO05D004350 5.3e-28 128.3 177 40.1
CDE08G1101 Ceratophyllum demersum HOM05D003804 ORTHO05D004350 1.3e-26 123.6 189 39.2
SEGI_36765 Sequoiadendron giganteum HOM05D003804 ORTHO05D004350 1.3e-26 123.6 194 37.1
SMO364G0002 Selaginella moellendorffii HOM05D003804 ORTHO05D004350 2.1e-21 106.3 159 37.1
Pp3c1_6500 Physcomitrium patens HOM05D003804 ORTHO05D004350 6.5e-18 94.7 204 31.4
Mapoly0009s0041 Marchantia polymorpha HOM05D003804 ORTHO05D004350 8.4e-18 94.4 200 32.5
Atru.chr2.1109 Acer truncatum HOM05D003804 ORTHO05D004350 2.7e-16 89.4 69 56.5
Pp3c2_32110 Physcomitrium patens HOM05D003804 ORTHO05D004350 1.0e-15 87.4 198 28.8
CBR_g3073 Chara braunii HOM05D003804 ORTHO05D004350 1.9e-14 83.2 81 45.7
Eucgr.H04216 Eucalyptus grandis HOM05D003804 ORTHO05D004350 6.9e-12 74.7 106 41.5
Hund22153 Selenicereus undatus HOM05D003804 ORTHO05D004350 1.7e-10 70.1 139 33.1
Atru.chr2.1108 Acer truncatum HOM05D003804 ORTHO05D004350 2.5e-09 66.2 46 67.4
MELO3C008614.2 Cucumis melo HOM05D003804 ORTHO05D004350 1.0e-07 60.8 45 62.2
HPP92_001761 Vanilla planifolia HOM05D003804 ORTHO05D004350 7.4e-06 54.7 48 52.1


User provided reference genes

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