Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0010681 Helianthus annuus HOM05D005278 ORTHO05D006500 1.5e-224 782.7 452 100.0
ECA248G1020 Erigeron canadensis HOM05D005278 ORTHO05D006500 7.1e-182 641.0 452 82.7
Lsat_1_v5_gn_5_169740 Lactuca sativa HOM05D005278 ORTHO05D006500 2.9e-175 619.0 455 82.4
Lsat_1_v5_gn_9_24160 Lactuca sativa HOM05D005278 ORTHO05D006500 2.5e-155 552.7 453 73.7
Hma1.2p1_0274F.1_g110490 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 1.8e-148 530.0 458 68.1
CSS0023124 Camellia sinensis var. sinensis HOM05D005278 ORTHO05D006500 1.1e-147 527.3 459 69.1
Dinv17056 Davidia involucrata HOM05D005278 ORTHO05D006500 2.1e-146 523.1 456 67.8
Dinv43000 Davidia involucrata HOM05D005278 ORTHO05D006500 2.1e-146 523.1 456 67.8
vmacro03023 Vaccinium macrocarpon HOM05D005278 ORTHO05D006500 4.8e-146 521.9 474 65.8
Manes.02G127600 Manihot esculenta HOM05D005278 ORTHO05D006500 1.4e-145 520.4 455 67.0
Lj1A145T60 Lonicera japonica HOM05D005278 ORTHO05D006500 1.8e-145 520.0 457 69.6
Actinidia08546 Actinidia chinensis HOM05D005278 ORTHO05D006500 2.9e-143 512.7 445 67.6
Oeu004184.2 Olea europaea HOM05D005278 ORTHO05D006500 6.5e-143 511.5 453 67.8
GSVIVG01024871001 Vitis vinifera HOM05D005278 ORTHO05D006500 1.1e-142 510.8 455 64.8
QL01p028069 Quercus lobata HOM05D005278 ORTHO05D006500 2.1e-141 506.5 454 66.3
TAR369G1109 Trochodendron aralioides HOM05D005278 ORTHO05D006500 3.5e-141 505.8 457 64.6
FAN21G0275 Fragaria x ananassa HOM05D005278 ORTHO05D006500 7.9e-141 504.6 456 66.0
Nitab4.5_0000507g0040 Nicotiana tabacum HOM05D005278 ORTHO05D006500 1.8e-140 503.4 457 65.2
FAN11G2960 Fragaria x ananassa HOM05D005278 ORTHO05D006500 3.9e-140 502.3 456 65.8
MD11G1092400 Malus domestica HOM05D005278 ORTHO05D006500 3.9e-140 502.3 455 66.2
Potri.001G245500 Populus trichocarpa HOM05D005278 ORTHO05D006500 3.9e-140 502.3 458 66.2
Sabra16G0148900 Salix brachista HOM05D005278 ORTHO05D006500 5.7e-139 498.4 458 65.9
CAN.G173.8 Capsicum annuum HOM05D005278 ORTHO05D006500 7.4e-139 498.0 457 63.5
Prupe.6G068200 Prunus persica HOM05D005278 ORTHO05D006500 7.4e-139 498.0 454 65.0
Gohir.A03G045500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 9.7e-139 497.7 453 64.0
Gorai.003G128600 Gossypium raimondii HOM05D005278 ORTHO05D006500 1.6e-138 496.9 453 64.2
FvH4_3g37100 Fragaria vesca HOM05D005278 ORTHO05D006500 3.7e-138 495.7 456 64.7
Nitab4.5_0006512g0020 Nicotiana tabacum HOM05D005278 ORTHO05D006500 2.4e-137 493.0 455 64.8
Ciclev10028430m.g Citrus clementina HOM05D005278 ORTHO05D006500 3.1e-137 492.7 458 64.4
CiPaw.14G064400 Carya illinoinensis HOM05D005278 ORTHO05D006500 6.9e-137 491.5 456 66.0
Rhsim13G0076600 Rhododendron simsii HOM05D005278 ORTHO05D006500 6.9e-137 491.5 457 64.3
FAN16G0192 Fragaria x ananassa HOM05D005278 ORTHO05D006500 9.0e-137 491.1 456 64.7
RcHm_v2.0_Chr5g0066731 Rosa chinensis HOM05D005278 ORTHO05D006500 1.2e-136 490.7 454 64.1
Cpa.g.sc81.65 Carica papaya HOM05D005278 ORTHO05D006500 2.6e-136 489.6 455 64.0
Dinv43097 Davidia involucrata HOM05D005278 ORTHO05D006500 4.5e-136 488.8 432 67.1
Aqoxy1G00819 Aquilegia oxysepala HOM05D005278 ORTHO05D006500 5.9e-136 488.4 456 63.2
Cc01_g13430 Coffea canephora HOM05D005278 ORTHO05D006500 5.9e-136 488.4 458 62.9
MSTRG.12654 Avicennia marina HOM05D005278 ORTHO05D006500 2.2e-135 486.5 455 64.6
DCAR_007424 Daucus carota HOM05D005278 ORTHO05D006500 3.8e-135 485.7 466 62.9
Hund18883 Selenicereus undatus HOM05D005278 ORTHO05D006500 9.4e-134 481.1 452 62.8
Peaxi162Scf00676g00221 Petunia axillaris HOM05D005278 ORTHO05D006500 1.6e-133 480.3 452 63.7
CANSAT54G0396 Cannabis sativa HOM05D005278 ORTHO05D006500 2.7e-133 479.6 455 63.3
arahy.Tifrunner.gnm1.ann1.NY9X43 Arachis hypogaea HOM05D005278 ORTHO05D006500 4.6e-133 478.8 455 62.0
Carub.0008s1974 Capsella rubella HOM05D005278 ORTHO05D006500 7.9e-133 478.0 452 62.4
Glyma.15G035200 Glycine max HOM05D005278 ORTHO05D006500 7.9e-133 478.0 458 61.1
Sopen09g019050 Solanum pennellii HOM05D005278 ORTHO05D006500 1.0e-132 477.6 452 62.4
AUR62001727 Chenopodium quinoa HOM05D005278 ORTHO05D006500 1.8e-132 476.9 453 61.6
Ca_01301_v3 Cicer arietinum L. HOM05D005278 ORTHO05D006500 1.8e-132 476.9 455 62.0
Cfa011575 Carpinus fangiana HOM05D005278 ORTHO05D006500 3.0e-132 476.1 445 64.9
arahy.Tifrunner.gnm1.ann1.4JU9WJ Arachis hypogaea HOM05D005278 ORTHO05D006500 6.7e-132 474.9 451 61.9
Migut.N00899 Erythranthe guttata HOM05D005278 ORTHO05D006500 1.1e-131 474.2 458 63.1
Manes.01G168300 Manihot esculenta HOM05D005278 ORTHO05D006500 1.7e-130 470.3 463 60.7
Sed0022829 Sechium edule HOM05D005278 ORTHO05D006500 2.8e-130 469.5 454 60.8
Lj3g0005158 Lotus japonicus HOM05D005278 ORTHO05D006500 4.1e-129 465.7 455 61.3
Gohir.D03G121500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 1.5e-128 463.8 430 63.7
Lalb_Chr24g0397151 Lupinus albus HOM05D005278 ORTHO05D006500 2.6e-128 463.0 455 60.7
Medtr2g097780 Medicago truncatula HOM05D005278 ORTHO05D006500 4.5e-128 462.2 456 60.7
THA.LOC104814887 Tarenaya hassleriana HOM05D005278 ORTHO05D006500 2.2e-127 459.9 455 60.7
PGR102G1735 Punica granatum HOM05D005278 ORTHO05D006500 2.9e-127 459.5 456 60.7
EL10Ac7g16079 Beta vulgaris HOM05D005278 ORTHO05D006500 1.1e-126 457.6 452 60.6
ClCG02G019860 Citrullus lanatus HOM05D005278 ORTHO05D006500 1.9e-126 456.8 454 61.0
TWI79G1569 Tripterygium wilfordii HOM05D005278 ORTHO05D006500 2.5e-126 456.4 457 60.6
AUR62020048 Chenopodium quinoa HOM05D005278 ORTHO05D006500 5.5e-126 455.3 456 60.3
PSO384G3155 Papaver somniferum HOM05D005278 ORTHO05D006500 9.4e-126 454.5 456 60.1
Psat5g287560 Pisum sativum HOM05D005278 ORTHO05D006500 2.1e-125 453.4 475 57.9
Ah.08g220210 Amaranthus hybridus HOM05D005278 ORTHO05D006500 2.7e-125 453.0 454 59.3
CARHR285340 Cardamine hirsuta HOM05D005278 ORTHO05D006500 7.9e-125 451.4 451 59.6
PSO339G3476 Papaver somniferum HOM05D005278 ORTHO05D006500 5.1e-124 448.7 455 59.1
VMungo1080G1008 Vigna mungo HOM05D005278 ORTHO05D006500 6.7e-124 448.4 459 58.8
Aa31LG4G15720 Aethionema arabicum HOM05D005278 ORTHO05D006500 2.8e-122 443.0 458 59.0
A10p16320 Brassica napus HOM05D005278 ORTHO05D006500 2.0e-120 436.8 453 59.6
Phvul.L008343 Phaseolus vulgaris HOM05D005278 ORTHO05D006500 2.0e-120 436.8 457 57.5
BraA10t43715Z Brassica rapa HOM05D005278 ORTHO05D006500 4.5e-120 435.6 451 59.6
Thecc.09G313600 Theobroma cacao HOM05D005278 ORTHO05D006500 1.7e-119 433.7 453 57.6
MELO3C025886.2 Cucumis melo HOM05D005278 ORTHO05D006500 2.9e-119 433.0 454 58.8
Glyma.13G339200 Glycine max HOM05D005278 ORTHO05D006500 8.5e-119 431.4 458 57.6
Nn2g13505 Nelumbo nucifera HOM05D005278 ORTHO05D006500 4.2e-118 429.1 458 58.7
MBI05_g02648_MAGBIO Magnolia biondii HOM05D005278 ORTHO05D006500 5.5e-118 428.7 412 60.9
C09p51370 Brassica napus HOM05D005278 ORTHO05D006500 7.2e-118 428.3 453 58.9
CsaV3_6G016570 Cucumis sativus L. HOM05D005278 ORTHO05D006500 1.2e-117 427.6 443 59.4
CsaV3_7G010040 Cucumis sativus L. HOM05D005278 ORTHO05D006500 1.2e-117 427.6 443 59.4
BolC9t57995H Brassica oleracea HOM05D005278 ORTHO05D006500 2.1e-117 426.8 468 57.5
BcaB08g36287 Brassica carinata HOM05D005278 ORTHO05D006500 2.7e-117 426.4 453 58.1
AL8G35480 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 8.0e-117 424.9 451 57.9
BcaC04g19820 Brassica carinata HOM05D005278 ORTHO05D006500 3.0e-116 422.9 453 58.7
FAN17G1485 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.1e-115 421.0 397 64.2
TPR.G6835 Trifolium pratense HOM05D005278 ORTHO05D006500 2.6e-115 419.9 430 60.5
Haze_24189 Corylus avellana HOM05D005278 ORTHO05D006500 3.7e-114 416.0 457 57.5
Eucgr.B02303 Eucalyptus grandis HOM05D005278 ORTHO05D006500 3.5e-112 409.5 460 57.0
Sabra09G0026700 Salix brachista HOM05D005278 ORTHO05D006500 7.7e-112 408.3 486 54.7
COL.COLO4_18589 Corchorus olitorius HOM05D005278 ORTHO05D006500 1.5e-110 404.1 456 56.1
AT5G59210 Arabidopsis thaliana HOM05D005278 ORTHO05D006500 3.2e-110 402.9 451 55.2
Thhalv10013620m.g Eutrema salsugineum HOM05D005278 ORTHO05D006500 3.7e-106 389.4 452 56.2
Sp6g20780 Schrenkiella parvula HOM05D005278 ORTHO05D006500 1.8e-105 387.1 453 55.0
FAN28G2746 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.9e-102 377.1 361 62.0
Atru.chr3.4014 Acer truncatum HOM05D005278 ORTHO05D006500 1.2e-101 374.4 366 64.2
Os03g0268100 Oryza sativa ssp. japonica HOM05D005278 ORTHO05D006500 7.0e-97 358.6 466 51.7
Zm00001eb397870 Zea mays HOM05D005278 ORTHO05D006500 4.0e-92 342.8 458 50.7
CDE04G2524 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 8.9e-92 341.7 442 48.4
unitig_52.g16817 Utricularia gibba HOM05D005278 ORTHO05D006500 8.9e-92 341.7 451 49.9
ATR0559G139 Amborella trichopoda HOM05D005278 ORTHO05D006500 2.6e-91 340.1 378 54.8
FvH4_2g37740 Fragaria vesca HOM05D005278 ORTHO05D006500 3.4e-91 339.7 333 63.7
CDE07G0843 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 2.3e-87 327.0 431 49.0
FAN27G2862 Fragaria x ananassa HOM05D005278 ORTHO05D006500 7.3e-86 322.0 407 52.3
Aa31LG1G11980 Aethionema arabicum HOM05D005278 ORTHO05D006500 3.2e-81 306.6 395 49.1
SEGI_23562 Sequoiadendron giganteum HOM05D005278 ORTHO05D006500 1.3e-79 301.2 468 42.7
HPP92_018172 Vanilla planifolia HOM05D001260 ORTHO05D002424 1.3e-79 301.2 426 47.2
SGA_v2.0_scaffold183G39886 Striga asiatica HOM05D005278 ORTHO05D006500 5.0e-79 299.3 475 46.1
RcHm_v2.0_Chr5g0066821 Rosa chinensis HOM05D005278 ORTHO05D006500 1.5e-75 287.7 286 59.8
HPP92_018158 Vanilla planifolia HOM05D005278 ORTHO05D006500 3.2e-73 280.0 383 46.2
Sc12g0001220 Simmondsia chinensis HOM05D005278 ORTHO05D006500 1.6e-69 267.7 282 57.4
Lalb_Chr14g0372041 Lupinus albus HOM05D005278 ORTHO05D006500 9.2e-65 251.9 258 57.4
AL48U10090 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 8.9e-60 235.3 236 60.2
Hma1.2p1_0274F.1_g110500 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 5.4e-57 226.1 220 60.9
C02p12810 Brassica napus HOM05D005278 ORTHO05D006500 1.3e-55 221.5 351 45.9
BcaC03g14039 Brassica carinata HOM05D005278 ORTHO05D006500 2.1e-53 214.2 374 44.7
BolC2t07376H Brassica oleracea HOM05D005278 ORTHO05D006500 5.3e-52 209.5 287 50.9
Lalb_Chr14g0372031 Lupinus albus HOM05D005278 ORTHO05D006500 7.6e-51 205.7 187 64.2
MD03G1084900 Malus domestica HOM05D005278 ORTHO05D006500 1.7e-50 204.5 255 54.5
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 9.6e-46 188.7 151 75.5
Mapoly0044s0102 Marchantia polymorpha HOM05D005278 ORTHO05D006500 6.2e-45 186.0 378 37.0
FAN11G3766 Fragaria x ananassa HOM05D005278 ORTHO05D006500 5.3e-44 183.0 327 43.7
Pp3c1_10500 Physcomitrium patens HOM05D005278 ORTHO05D006500 1.2e-43 181.8 377 37.7
SMO361G0431 Selaginella moellendorffii HOM05D005278 ORTHO05D006500 1.2e-43 181.8 479 35.1
Zm00001eb011990 Zea mays HOM05D005278 ORTHO05D006500 9.6e-38 162.2 265 46.0
FvH4_3g06680 Fragaria vesca HOM05D005278 ORTHO05D006500 8.1e-37 159.1 179 57.5
FAN11G1104 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.4e-36 158.3 197 53.3
Sc12g0001210 Simmondsia chinensis HOM05D005278 ORTHO05D006500 1.8e-36 157.9 130 66.2
CBR_g23966 Chara braunii HOM05D005278 ORTHO05D006500 1.2e-35 155.2 451 30.4
RcHm_v2.0_Chr7g0185271 Rosa chinensis HOM05D005278 ORTHO05D006500 7.4e-30 136.0 161 56.5
FvH4_3g06640 Fragaria vesca HOM05D005278 ORTHO05D006500 5.3e-28 129.8 123 60.2
SHI05905 Sapria himalayana HOM05D005278 ORTHO05D006500 1.7e-26 124.8 195 44.1
FAN25G0674 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.1e-24 117.9 172 47.7
Manes.04G070850 Manihot esculenta HOM05D005278 ORTHO05D006500 4.5e-19 100.1 147 46.3
RcHm_v2.0_Chr5g0066831 Rosa chinensis HOM05D005278 ORTHO05D006500 1.3e-18 98.6 93 60.2
RcHm_v2.0_Chr5g0066581 Rosa chinensis HOM05D005278 ORTHO05D006500 8.5e-18 95.9 67 77.6
Rhsim13G0076500 Rhododendron simsii HOM05D005278 ORTHO05D006500 1.6e-16 91.7 83 63.9
TPR.G20043 Trifolium pratense HOM05D005278 ORTHO05D006500 3.6e-16 90.5 102 53.9
C02p36410 Brassica napus HOM05D005278 ORTHO05D006500 8.8e-15 85.9 107 53.3
BcaB05g22478 Brassica carinata HOM05D005278 ORTHO05D006500 1.2e-11 75.5 194 36.6
BcaC06g34357 Brassica carinata HOM05D005278 ORTHO05D016744 3.9e-07 60.5 68 55.9
Cre01.g043400 Chlamydomonas reinhardtii HOM05D005278 ORTHO05D006500 1.1e-06 58.9 186 26.9


User provided reference genes

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