Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0010521 Helianthus annuus HOM05D003822 ORTHO05D004484 3.3e-132 475.3 294 100.0
HanXRQChr10g0281191 Helianthus annuus HOM05D003822 ORTHO05D004484 8.6e-96 354.4 301 72.4
ECA236G4570 Erigeron canadensis HOM05D003822 ORTHO05D004484 7.5e-92 341.3 304 72.0
Lsat_1_v5_gn_8_98601 Lactuca sativa HOM05D003822 ORTHO05D004484 3.0e-88 329.3 310 74.5
ECA248G1190 Erigeron canadensis HOM05D002050 ORTHO05D001949 3.3e-79 299.3 290 63.4
Peaxi162Scf00995g00322 Petunia axillaris HOM05D003822 ORTHO05D004484 7.6e-76 288.1 301 64.8
COL.COLO4_29926 Corchorus olitorius HOM05D003822 ORTHO05D004484 1.7e-75 287.0 306 62.4
SGA_v2.0_scaffold77G25327 Striga asiatica HOM05D003822 ORTHO05D004484 1.1e-74 284.3 304 61.8
QL10p052081 Quercus lobata HOM05D003822 ORTHO05D004484 1.4e-74 283.9 309 64.4
VMungo1080G0920 Vigna mungo HOM05D003822 ORTHO05D004484 2.4e-74 283.1 309 61.2
Hma1.2p1_0635F.1_g193140 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 1.2e-73 280.8 309 62.1
vmacro14674 Vaccinium macrocarpon HOM05D003822 ORTHO05D004484 4.6e-73 278.9 306 62.4
Prupe.1G200400 Prunus persica HOM05D003822 ORTHO05D004484 6.0e-73 278.5 313 62.3
Glyma.15G027800 Glycine max HOM05D003822 ORTHO05D004484 5.1e-72 275.4 306 64.7
Glyma.13G346400 Glycine max HOM05D003822 ORTHO05D004484 1.9e-71 273.5 307 61.2
MSTRG.17947 Avicennia marina HOM05D003822 ORTHO05D004484 3.3e-71 272.7 307 61.6
Nn1g09539 Nelumbo nucifera HOM05D003822 ORTHO05D004484 4.3e-71 272.3 292 62.3
THA.LOC104822456 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 5.6e-71 271.9 297 66.0
Eucgr.H00681 Eucalyptus grandis HOM05D003822 ORTHO05D004484 9.6e-71 271.2 302 63.6
Sc19g0002790 Simmondsia chinensis HOM05D003822 ORTHO05D004484 3.6e-70 269.2 304 61.2
TPR.G6564 Trifolium pratense HOM05D003822 ORTHO05D004484 4.7e-70 268.9 313 55.3
Cc02_g30690 Coffea canephora HOM05D003822 ORTHO05D004484 8.1e-70 268.1 299 64.5
Hma1.2p1_2403F.1_g321420 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 1.1e-69 267.7 314 59.9
TAR633G2284 Trochodendron aralioides HOM05D003822 ORTHO05D004484 5.2e-69 265.4 298 63.4
Cfa015215 Carpinus fangiana HOM05D003822 ORTHO05D004484 6.9e-69 265.0 301 64.8
Glyma.11G125400 Glycine max HOM05D003822 ORTHO05D004484 1.2e-68 264.2 298 59.4
Oeu013421.2 Olea europaea HOM05D003822 ORTHO05D004484 1.2e-68 264.2 313 59.1
Solyc06g007700.4 Solanum lycopersicum HOM05D003822 ORTHO05D004484 1.2e-68 264.2 299 63.2
Ca_01239_v3 Cicer arietinum L. HOM05D003822 ORTHO05D004484 2.0e-68 263.5 313 64.5
unitig_22.g5196 Utricularia gibba HOM05D003822 ORTHO05D004484 2.6e-68 263.1 307 57.0
Haze_01421 Corylus avellana HOM05D003822 ORTHO05D004484 3.4e-68 262.7 303 65.0
Gorai.007G162100 Gossypium raimondii HOM05D003822 ORTHO05D004484 3.4e-68 262.7 303 60.4
Gohir.D11G153200 Gossypium hirsutum HOM05D003822 ORTHO05D004484 7.6e-68 261.5 303 60.4
TAR362G1102 Trochodendron aralioides HOM05D003822 ORTHO05D004484 7.6e-68 261.5 311 57.2
FAN08G2486 Fragaria x ananassa HOM05D003822 ORTHO05D004484 9.9e-68 261.2 317 57.7
Thecc.01G205200 Theobroma cacao HOM05D003822 ORTHO05D004484 9.9e-68 261.2 312 59.9
Nitab4.5_0002641g0020 Nicotiana tabacum HOM05D003822 ORTHO05D004484 1.3e-67 260.8 300 62.3
Nn7g37555 Nelumbo nucifera HOM05D003822 ORTHO05D004484 2.9e-67 259.6 296 57.8
VMungo1127G1572 Vigna mungo HOM05D003822 ORTHO05D004484 4.9e-67 258.8 294 57.5
Gohir.A11G145000 Gossypium hirsutum HOM05D003822 ORTHO05D004484 8.4e-67 258.1 303 59.1
TWI18G0659 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 1.4e-66 257.3 300 64.7
Lj3g0026330 Lotus japonicus HOM05D003822 ORTHO05D004484 9.3e-66 254.6 312 61.5
Nitab4.5_0003952g0050 Nicotiana tabacum HOM05D003822 ORTHO05D004484 9.3e-66 254.6 307 57.0
Actinidia23132 Actinidia chinensis HOM05D003822 ORTHO05D004484 2.1e-65 253.4 302 56.0
Ciclev10021425m.g Citrus clementina HOM05D003822 ORTHO05D004484 2.1e-65 253.4 301 64.1
Manes.13G057600 Manihot esculenta HOM05D003822 ORTHO05D004484 2.7e-65 253.1 306 57.8
Medtr2g099360 Medicago truncatula HOM05D003822 ORTHO05D004484 3.5e-65 252.7 334 55.1
MD04G1046700 Malus domestica HOM05D003822 ORTHO05D004484 7.8e-65 251.5 323 57.9
PSO837G0022 Papaver somniferum HOM05D003822 ORTHO05D004484 7.8e-65 251.5 315 62.2
Ah.07g202460 Amaranthus hybridus HOM05D003822 ORTHO05D004484 1.0e-64 251.1 299 57.5
Eucgr.A00039 Eucalyptus grandis HOM05D003822 ORTHO05D004484 1.0e-64 251.1 303 57.4
Phvul.005G155400 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 1.7e-64 250.4 303 60.4
FAN04G1289 Fragaria x ananassa HOM05D003822 ORTHO05D004484 3.0e-64 249.6 312 60.9
FAN18G3379 Fragaria x ananassa HOM05D003822 ORTHO05D004484 3.0e-64 249.6 312 60.9
TWI36G1391 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 3.9e-64 249.2 310 55.5
TWI36G1709 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 3.9e-64 249.2 310 55.5
Lalb_Chr22g0352031 Lupinus albus HOM05D003822 ORTHO05D004484 5.1e-64 248.8 303 57.1
PSO017G3256 Papaver somniferum HOM05D003822 ORTHO05D004484 5.1e-64 248.8 315 61.6
PGSC0003DMG400020658 Solanum tuberosum HOM05D003822 ORTHO05D004484 5.1e-64 248.8 311 62.7
Ciclev10016105m.g Citrus clementina HOM05D003822 ORTHO05D004484 8.7e-64 248.1 305 62.3
arahy.Tifrunner.gnm1.ann1.0NAL6S Arachis hypogaea HOM05D003822 ORTHO05D004484 1.5e-63 247.3 300 61.7
arahy.Tifrunner.gnm1.ann1.1KAH27 Arachis hypogaea HOM05D003822 ORTHO05D004484 1.5e-63 247.3 300 62.0
Sopen06g002590 Solanum pennellii HOM05D003822 ORTHO05D004484 1.9e-63 246.9 312 60.6
BraA05t22796Z Brassica rapa HOM05D003822 ORTHO05D004484 4.3e-63 245.7 313 61.0
AUR62002363 Chenopodium quinoa HOM05D003822 ORTHO05D004484 5.6e-63 245.4 312 61.9
AT3G07560 Arabidopsis thaliana HOM05D003822 ORTHO05D004484 9.6e-63 244.6 307 62.9
Duzib211G0255 Durio zibethinus HOM05D003822 ORTHO05D004484 9.6e-63 244.6 296 60.5
CiPaw.02G103400 Carya illinoinensis HOM05D003822 ORTHO05D004484 1.3e-62 244.2 309 63.1
Potri.017G018400 Populus trichocarpa HOM05D003822 ORTHO05D004484 1.6e-62 243.8 311 62.1
TAR365G1107 Trochodendron aralioides HOM05D003822 ORTHO05D004484 1.6e-62 243.8 290 61.7
A05p40650 Brassica napus HOM05D003822 ORTHO05D004484 2.8e-62 243.0 305 62.0
Peaxi162Scf00372g00722 Petunia axillaris HOM05D003822 ORTHO05D004484 2.8e-62 243.0 300 61.0
MELO3C017788.2 Cucumis melo HOM05D003822 ORTHO05D004484 3.6e-62 242.7 304 57.9
Actinidia34522 Actinidia chinensis HOM05D003822 ORTHO05D004484 4.8e-62 242.3 310 54.8
THA.LOC104819024 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 4.8e-62 242.3 309 61.8
CiPaw.01G173700 Carya illinoinensis HOM05D003822 ORTHO05D004484 8.1e-62 241.5 302 62.9
Dinv28779 Davidia involucrata HOM05D003822 ORTHO05D004484 1.1e-61 241.1 285 61.8
Lalb_Chr24g0396641 Lupinus albus HOM05D003822 ORTHO05D004484 1.1e-61 241.1 330 55.8
PGR102G0947 Punica granatum HOM05D003822 ORTHO05D004484 1.4e-61 240.7 311 57.6
Thhalv10021215m.g Eutrema salsugineum HOM05D003822 ORTHO05D004484 5.3e-61 238.8 320 57.5
Sed0021377 Sechium edule HOM05D003822 ORTHO05D004484 5.3e-61 238.8 299 58.9
Duzib138G1354 Durio zibethinus HOM05D003822 ORTHO05D004484 6.9e-61 238.4 288 62.8
Aqoxy2G04159 Aquilegia oxysepala HOM05D003822 ORTHO05D004484 1.2e-60 237.7 318 55.3
Lj3g0024368 Lotus japonicus HOM05D003822 ORTHO05D004484 1.2e-60 237.7 295 61.7
RcHm_v2.0_Chr7g0230961 Rosa chinensis HOM05D003822 ORTHO05D004484 1.2e-60 237.7 319 54.2
Sabra14G0133100 Salix brachista HOM05D003822 ORTHO05D004484 1.5e-60 237.3 309 55.3
RcHm_v2.0_Chr1g0340971 Rosa chinensis HOM05D003822 ORTHO05D004484 2.0e-60 236.9 310 55.5
Sabra07G0108500 Salix brachista HOM05D003822 ORTHO05D004484 2.0e-60 236.9 302 55.3
Sabra07G0120800 Salix brachista HOM05D003822 ORTHO05D004484 2.0e-60 236.9 302 55.3
Lsat_1_v5_gn_5_175601 Lactuca sativa HOM05D003822 ORTHO05D004484 4.5e-60 235.7 299 61.5
Manes.12G057507 Manihot esculenta HOM05D003822 ORTHO05D004484 4.5e-60 235.7 297 62.3
Manes.12G057905 Manihot esculenta HOM05D003822 ORTHO05D004484 4.5e-60 235.7 297 62.3
BcaB03g14694 Brassica carinata HOM05D003822 ORTHO05D004484 7.6e-60 235.0 308 61.0
CAN.G181.49 Capsicum annuum HOM05D003822 ORTHO05D004484 9.9e-60 234.6 305 60.3
FvH4_5g32960 Fragaria vesca HOM05D003822 ORTHO05D004484 1.3e-59 234.2 313 57.5
MD00G1127600 Malus domestica HOM05D003822 ORTHO05D004484 1.7e-59 233.8 307 59.6
AL3G18900 Arabidopsis lyrata HOM05D003822 ORTHO05D004484 2.9e-59 233.0 315 57.1
Sabra17G0014400 Salix brachista HOM05D000455 ORTHO05D000434 3.8e-59 232.6 316 57.3
Hund03185 Selenicereus undatus HOM05D003822 ORTHO05D004484 6.4e-59 231.9 298 54.4
Atru.chr6.3488 Acer truncatum HOM05D003822 ORTHO05D004484 8.4e-59 231.5 303 60.7
Carub.0003s0711 Capsella rubella HOM05D003822 ORTHO05D004484 8.4e-59 231.5 307 60.9
Sp3g06480 Schrenkiella parvula HOM05D003822 ORTHO05D004484 8.4e-59 231.5 307 60.3
CsaV3_4G002560 Cucumis sativus L. HOM05D003822 ORTHO05D004484 1.9e-58 230.3 297 62.0
A03p35330 Brassica napus HOM05D003822 ORTHO05D004484 5.4e-58 228.8 304 63.2
Cpa.g.sc8.23 Carica papaya HOM05D003822 ORTHO05D004484 7.1e-58 228.4 302 57.3
Duzib133G0954 Durio zibethinus HOM05D003822 ORTHO05D004484 9.3e-58 228.0 308 53.6
EL10Ac3g06027 Beta vulgaris HOM05D003822 ORTHO05D004484 1.6e-57 227.3 292 61.6
Sed0005976 Sechium edule HOM05D003822 ORTHO05D004484 2.1e-57 226.9 296 62.2
C03p42940 Brassica napus HOM05D003822 ORTHO05D004484 4.6e-57 225.7 308 56.5
CDE05G3137 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 2.3e-56 223.4 289 56.7
BcaC01g04277 Brassica carinata HOM05D003822 ORTHO05D004484 6.7e-56 221.9 306 56.2
Aa31LG5G18100 Aethionema arabicum HOM05D003822 ORTHO05D004484 1.1e-55 221.1 326 52.5
Manes.11G127100 Manihot esculenta HOM05D003822 ORTHO05D004484 1.1e-55 221.1 269 59.9
Migut.N00690 Erythranthe guttata HOM05D003822 ORTHO05D004484 1.5e-55 220.7 312 60.6
Manes.12G058903 Manihot esculenta HOM05D003822 ORTHO05D004484 2.5e-55 219.9 300 59.7
C05p59760 Brassica napus HOM05D003822 ORTHO05D004484 3.3e-55 219.5 318 52.2
MBI02_g24302_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 3.3e-55 219.5 294 57.8
BolC3t16562H Brassica oleracea HOM05D003822 ORTHO05D004484 5.6e-55 218.8 302 61.6
BolC5t34630H Brassica oleracea HOM05D003822 ORTHO05D004484 5.6e-55 218.8 312 56.1
SGA_v2.0_scaffold95G28678 Striga asiatica HOM05D003822 ORTHO05D004484 9.6e-55 218.0 231 63.2
CANSAT11G1915 Cannabis sativa HOM05D003822 ORTHO05D004484 1.3e-54 217.6 306 61.4
Potri.014G197200 Populus trichocarpa HOM05D003822 ORTHO05D004484 1.6e-54 217.2 303 61.4
CANSAT56G4141 Cannabis sativa HOM05D003822 ORTHO05D004484 4.8e-54 215.7 310 60.6
HPP92_015668 Vanilla planifolia HOM05D003822 ORTHO05D004484 6.2e-54 215.3 294 53.7
CDE02G4798 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 8.1e-54 214.9 310 52.9
CSS0026869 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 1.1e-53 214.5 305 55.7
PGR083G0513 Punica granatum HOM05D003822 ORTHO05D004484 1.4e-53 214.2 303 60.4
Sabra17G0002300 Salix brachista HOM05D000455 ORTHO05D000434 9.0e-53 211.5 363 50.1
ATR0752G090 Amborella trichopoda HOM05D003822 ORTHO05D004484 1.5e-52 210.7 288 55.6
BcaB04g21287 Brassica carinata HOM05D003822 ORTHO05D004484 3.8e-51 206.1 307 51.8
Os07g0152800 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 3.2e-50 203.0 295 56.9
ClCG07G011660 Citrullus lanatus HOM05D003822 ORTHO05D004484 5.5e-50 202.2 400 47.0
BcaC05g29550 Brassica carinata HOM05D003822 ORTHO05D004484 7.1e-50 201.8 301 56.1
Zm00001eb117520 Zea mays HOM05D003822 ORTHO05D004484 9.3e-50 201.4 310 50.3
AUR62023822 Chenopodium quinoa HOM05D003822 ORTHO05D004484 1.8e-48 197.2 305 49.8
Os03g0786000 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 1.8e-48 197.2 292 54.1
Zm00001eb059960 Zea mays HOM05D003822 ORTHO05D004484 6.2e-46 188.7 291 51.5
Oeu020438.1 Olea europaea HOM05D003822 ORTHO05D004484 6.5e-43 178.7 219 69.9
SEGI_07594 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 9.3e-42 174.9 310 48.1
PGSC0003DMG400020552 Solanum tuberosum HOM05D003822 ORTHO05D004484 9.3e-42 174.9 223 65.5
CSS0006211 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 1.2e-41 174.5 220 55.5
SEGI_01562 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 1.6e-41 174.1 312 44.9
Lj2C1109G11 Lonicera japonica HOM05D003822 ORTHO05D004484 2.1e-41 173.7 307 50.8
Psat5g291600 Pisum sativum HOM05D003822 ORTHO05D004484 1.0e-40 171.4 248 60.9
Actinidia11655 Actinidia chinensis HOM05D003822 ORTHO05D004484 2.3e-40 170.2 126 68.3
MBI18_g24478_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 6.7e-40 168.7 283 49.1
BolC1t05546H Brassica oleracea HOM05D003822 ORTHO05D004484 5.7e-39 165.6 246 60.6
Gorai.N001500 Gossypium raimondii HOM05D003822 ORTHO05D004484 1.2e-36 157.9 304 46.1
Phvul.011G052000 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 5.9e-36 155.6 215 54.9
MSTRG.12733 Avicennia marina HOM05D003822 ORTHO05D004484 1.1e-34 151.4 206 53.4
BraA01t04376Z Brassica rapa HOM05D003822 ORTHO05D004484 3.2e-34 149.8 132 60.6
Manes.12G058104 Manihot esculenta HOM05D003822 ORTHO05D004484 3.1e-29 133.3 100 67.0
unitig_8.g3681 Utricularia gibba HOM05D003822 ORTHO05D004484 7.7e-28 128.6 103 71.8
Pp3c11_19790 Physcomitrium patens HOM05D003822 ORTHO05D004484 1.3e-27 127.9 311 47.3
AagrBONN_evm.TU.Sc2ySwM_368.3329 Anthoceros agrestis HOM05D003822 ORTHO05D004484 5.0e-27 125.9 304 45.1
SMO146G0020 Selaginella moellendorffii HOM05D003822 ORTHO05D004484 1.2e-25 121.3 309 43.0
Oeu020439.1 Olea europaea HOM05D003822 ORTHO05D004484 2.6e-23 113.6 94 68.1
MSTRG.12731 Avicennia marina HOM05D003822 ORTHO05D004484 5.7e-23 112.5 101 58.4
CSS0030404 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 1.3e-22 111.3 86 70.9
Gohir.A07G157900 Gossypium hirsutum HOM05D003822 ORTHO05D004484 2.8e-22 110.2 120 60.0
CBR_g38951 Chara braunii HOM05D003822 ORTHO05D004484 1.4e-21 107.8 329 45.3
Mapoly0080s0067 Marchantia polymorpha HOM05D003822 ORTHO05D004484 3.1e-21 106.7 343 38.8
Atru.chr4.1339 Acer truncatum HOM05D003822 ORTHO05D004484 1.2e-20 104.8 89 64.0
CARHR082240 Cardamine hirsuta HOM05D003822 ORTHO05D004484 1.3e-19 101.3 200 59.0
FAN10G3558 Fragaria x ananassa HOM05D003822 ORTHO05D046505 1.6e-17 94.4 82 68.3
FvH4_7g08180 Fragaria vesca HOM05D003822 ORTHO05D046505 4.7e-17 92.8 81 67.9
Eucgr.C02476 Eucalyptus grandis HOM05D003822 ORTHO05D004484 6.1e-17 92.4 64 73.4
Eucgr.B03613 Eucalyptus grandis HOM05D003822 ORTHO05D004484 1.8e-16 90.9 69 69.6
FAN01G1095 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.1e-15 88.2 282 37.6
FAN06G0586 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.1e-15 88.2 110 52.7
Thecc.04G171800 Theobroma cacao HOM05D003822 ORTHO05D004484 9.7e-15 85.1 63 60.3
MCO15G241 Micromonas commoda HOM05D003822 ORTHO05D004484 2.4e-13 80.5 305 45.6
Cre13.g574700 Chlamydomonas reinhardtii HOM05D003822 ORTHO05D004484 2.0e-12 77.4 66 56.1
CARHR082220 Cardamine hirsuta HOM05D003822 ORTHO05D004484 4.5e-12 76.3 73 58.9
FAN01G2016 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.1e-10 71.6 46 82.6
Hma1.2p1_0161F.1_g071790 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 2.1e-09 67.4 208 37.5
SEGI_40649 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 2.7e-09 67.0 116 47.4
ATR0737G020 Amborella trichopoda HOM05D003822 ORTHO05D004484 5.2e-08 62.8 77 50.6
SEGI_02285 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 6.7e-08 62.4 131 42.0
CBR_g50337 Chara braunii HOM05D003822 ORTHO05D004484 7.5e-07 58.9 264 45.5
FAN06G2565 Fragaria x ananassa HOM05D003822 ORTHO05D001690 9.7e-07 58.5 83 50.6


User provided reference genes

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