Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0009891 Helianthus annuus HOM05D004984 ORTHO05D006508 2.6e-272 941.4 465 100.0
Lsat_1_v5_gn_7_82880 Lactuca sativa HOM05D004984 ORTHO05D006508 3.0e-212 741.9 420 86.9
Lsat_1_v5_gn_5_110941 Lactuca sativa HOM05D004984 ORTHO05D006508 2.0e-208 729.2 427 85.2
ECA234G3445 Erigeron canadensis HOM05D004984 ORTHO05D006508 2.9e-207 725.3 427 84.8
HanXRQChr10g0291211 Helianthus annuus HOM05D004984 ORTHO05D006508 1.2e-205 719.9 427 82.9
Lj5A225T68 Lonicera japonica HOM05D004984 ORTHO05D006508 1.4e-201 706.4 418 81.8
Thecc.02G125200 Theobroma cacao HOM05D004984 ORTHO05D006508 4.1e-201 704.9 432 79.9
Dinv16030 Davidia involucrata HOM05D004984 ORTHO05D006508 5.4e-201 704.5 439 79.3
CSS0038067 Camellia sinensis var. sinensis HOM05D004984 ORTHO05D006508 1.6e-200 703.0 427 80.6
Hma1.2p1_0435F.1_g152620 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 2.0e-200 702.6 439 78.8
Dinv08970 Davidia involucrata HOM05D004984 ORTHO05D006508 2.7e-200 702.2 439 78.6
Oeu059891.1 Olea europaea HOM05D004984 ORTHO05D006508 7.2e-198 694.1 450 75.8
Gohir.A03G178800 Gossypium hirsutum HOM05D004984 ORTHO05D006508 9.4e-198 693.7 422 79.9
Gorai.005G227400 Gossypium raimondii HOM05D004984 ORTHO05D006508 1.2e-197 693.3 422 79.6
Gohir.D02G202500 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.1e-197 692.6 422 79.6
Duzib132G1162 Durio zibethinus HOM05D004984 ORTHO05D006508 2.7e-197 692.2 422 79.9
Gohir.A04G116400 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.4e-196 689.9 420 78.8
PGSC0003DMG402029578 Solanum tuberosum HOM05D004984 ORTHO05D006508 2.3e-196 689.1 424 78.5
Prupe.8G074900 Prunus persica HOM05D004984 ORTHO05D006508 3.0e-196 688.7 440 78.0
Cc02_g20610 Coffea canephora HOM05D004984 ORTHO05D006508 4.0e-196 688.3 446 76.2
CsaV3_4G014670 Cucumis sativus L. HOM05D004984 ORTHO05D006508 4.0e-196 688.3 425 78.4
Gohir.D04G158100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 4.0e-196 688.3 420 78.8
MELO3C018046.2 Cucumis melo HOM05D004984 ORTHO05D006508 8.8e-196 687.2 425 78.1
Duzib052G0292 Durio zibethinus HOM05D004984 ORTHO05D006508 8.8e-196 687.2 416 80.0
Atru.chr6.1348 Acer truncatum HOM05D004984 ORTHO05D006508 1.5e-195 686.4 428 78.3
CAN.G908.9 Capsicum annuum HOM05D004984 ORTHO05D006508 4.4e-195 684.9 424 77.4
SGA_v2.0_scaffold219G42554 Striga asiatica HOM05D004984 ORTHO05D006508 5.7e-195 684.5 423 77.8
Gorai.012G145500 Gossypium raimondii HOM05D004984 ORTHO05D006508 9.8e-195 683.7 420 78.6
Eucgr.I02584 Eucalyptus grandis HOM05D004984 ORTHO05D006508 1.3e-194 683.3 440 77.0
Sopen08g022650 Solanum pennellii HOM05D004984 ORTHO05D006508 1.7e-194 682.9 424 78.1
TAR376G0949 Trochodendron aralioides HOM05D004984 ORTHO05D006508 2.8e-194 682.2 441 76.9
GSVIVG01038516001 Vitis vinifera HOM05D004984 ORTHO05D006508 2.8e-194 682.2 427 78.0
MSTRG.23114 Avicennia marina HOM05D004984 ORTHO05D006508 3.7e-194 681.8 444 76.1
ClCG10G009790 Citrullus lanatus HOM05D004984 ORTHO05D006508 4.9e-194 681.4 425 77.4
Peaxi162Scf00152g00730 Petunia axillaris HOM05D004984 ORTHO05D006508 4.9e-194 681.4 440 76.1
QL11p026578 Quercus lobata HOM05D004984 ORTHO05D006508 8.3e-194 680.6 444 75.0
MD10G1056700 Malus domestica HOM05D004984 ORTHO05D006508 1.8e-193 679.5 428 77.3
RcHm_v2.0_Chr6g0269501 Rosa chinensis HOM05D004984 ORTHO05D006508 3.1e-193 678.7 423 78.3
FvH4_2g11180 Fragaria vesca HOM05D004984 ORTHO05D006508 4.1e-193 678.3 440 76.8
FAN20G2814 Fragaria x ananassa HOM05D004984 ORTHO05D006508 5.4e-193 677.9 440 76.8
FAN27G1475 Fragaria x ananassa HOM05D004984 ORTHO05D006508 5.4e-193 677.9 440 76.8
TAR381G0604 Trochodendron aralioides HOM05D004984 ORTHO05D006508 5.4e-193 677.9 423 77.8
MD05G1049600 Malus domestica HOM05D004984 ORTHO05D006508 9.1e-193 677.2 440 77.0
FAN15G1055 Fragaria x ananassa HOM05D004984 ORTHO05D006508 1.2e-192 676.8 440 76.4
PSO532G0022 Papaver somniferum HOM05D004984 ORTHO05D006508 1.6e-192 676.4 429 76.7
PSO541G0041 Papaver somniferum HOM05D004984 ORTHO05D006508 2.0e-192 676.0 429 76.9
THA.LOC104808837 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 3.5e-192 675.2 428 76.6
PGR142G0200 Punica granatum HOM05D004984 ORTHO05D006508 4.5e-192 674.9 429 76.7
Sed0007187 Sechium edule HOM05D004984 ORTHO05D006508 1.0e-191 673.7 425 77.2
SalBow6G5880 Salvia bowleyana HOM05D004984 ORTHO05D006508 1.7e-191 672.9 453 72.8
Actinidia02410 Actinidia chinensis HOM05D004984 ORTHO05D006508 1.5e-190 669.8 422 77.5
vmacro01898 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 3.3e-190 668.7 424 75.9
vmacro23356 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 3.3e-190 668.7 424 75.9
Manes.07G046600 Manihot esculenta HOM05D004984 ORTHO05D006508 5.5e-190 667.9 422 76.8
TAR625G1028 Trochodendron aralioides HOM05D004984 ORTHO05D006508 5.5e-190 667.9 445 74.4
DCAR_029278 Daucus carota HOM05D004984 ORTHO05D006508 9.5e-190 667.2 419 79.2
ATR0800G083 Amborella trichopoda HOM05D004984 ORTHO05D006508 3.6e-189 665.2 429 74.8
Nn1g05667 Nelumbo nucifera HOM05D004984 ORTHO05D006508 1.4e-188 663.3 426 76.5
ECA236G3860 Erigeron canadensis HOM05D004984 ORTHO05D006508 3.0e-188 662.1 367 89.1
Sed0006594 Sechium edule HOM05D004984 ORTHO05D006508 3.0e-188 662.1 430 75.1
Thhalv10002529m.g Eutrema salsugineum HOM05D004984 ORTHO05D006508 4.0e-188 661.8 422 77.0
Aa31sc202G40 Aethionema arabicum HOM05D004984 ORTHO05D006508 5.2e-188 661.4 427 76.6
BcaB06g26775 Brassica carinata HOM05D004984 ORTHO05D006508 5.2e-188 661.4 422 77.3
Migut.B00524 Erythranthe guttata HOM05D004984 ORTHO05D006508 5.2e-188 661.4 443 74.7
Potri.001G285300 Populus trichocarpa HOM05D004984 ORTHO05D006508 6.8e-188 661.0 428 75.9
THA.LOC104815368 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 2.6e-187 659.1 422 76.3
AL3G42000 Arabidopsis lyrata HOM05D004984 ORTHO05D006508 3.4e-187 658.7 429 76.5
CDE06G1646 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 4.4e-187 658.3 439 73.6
Sp6g01600 Schrenkiella parvula HOM05D004984 ORTHO05D006508 4.4e-187 658.3 422 77.0
A07p06740 Brassica napus HOM05D004984 ORTHO05D006508 7.5e-187 657.5 422 76.8
Aqoxy6G00646 Aquilegia oxysepala HOM05D004984 ORTHO05D006508 9.8e-187 657.1 430 73.5
C07p10310 Brassica napus HOM05D004984 ORTHO05D006508 9.8e-187 657.1 422 76.8
BraA07t28467Z Brassica rapa HOM05D004984 ORTHO05D006508 1.3e-186 656.8 422 76.8
BcaC06g35862 Brassica carinata HOM05D004984 ORTHO05D006508 1.7e-186 656.4 422 76.8
BolC7t41481H Brassica oleracea HOM05D004984 ORTHO05D006508 1.7e-186 656.4 422 76.8
CARHR102180 Cardamine hirsuta HOM05D004984 ORTHO05D006508 2.9e-186 655.6 429 76.5
CiPaw.05G027100 Carya illinoinensis HOM05D004984 ORTHO05D006508 2.9e-186 655.6 420 76.2
Ciclev10028425m.g Citrus clementina HOM05D004984 ORTHO05D006508 3.7e-186 655.2 433 75.5
Potri.009G079600 Populus trichocarpa HOM05D004984 ORTHO05D006508 3.7e-186 655.2 439 74.7
Sabra09G0061600 Salix brachista HOM05D004984 ORTHO05D006508 5.4e-185 651.4 463 71.9
Hund00395 Selenicereus undatus HOM05D004984 ORTHO05D006508 1.2e-184 650.2 422 74.6
Carub.0003s2601 Capsella rubella HOM05D004984 ORTHO05D006508 2.7e-184 649.0 429 75.5
Gohir.D13G048100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.3e-183 646.0 413 75.5
Gorai.013G053700 Gossypium raimondii HOM05D004984 ORTHO05D006508 2.3e-183 646.0 413 75.5
Ca_00179_v3 Cicer arietinum L. HOM05D004984 ORTHO05D006508 5.6e-182 641.3 454 73.1
VMungo0540G0195 Vigna mungo HOM05D004984 ORTHO05D006508 9.5e-182 640.6 433 73.9
Gohir.A13G049600 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.6e-181 639.8 413 75.3
Glyma.13G254800 Glycine max HOM05D004984 ORTHO05D006508 1.0e-180 637.1 440 73.9
Psat1g212920 Pisum sativum HOM05D004984 ORTHO05D006508 1.0e-180 637.1 453 72.2
Glyma.15G060000 Glycine max HOM05D004984 ORTHO05D006508 5.2e-180 634.8 440 73.6
AUR62027083 Chenopodium quinoa HOM05D004984 ORTHO05D006508 4.4e-179 631.7 422 73.5
TWI14G0615 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 9.8e-179 630.6 420 74.8
Oeu010515.3 Olea europaea HOM05D004984 ORTHO05D006508 6.4e-178 627.9 570 58.9
Medtr2g010000 Medicago truncatula HOM05D004984 ORTHO05D006508 1.4e-177 626.7 432 74.5
TPR.G32658 Trifolium pratense HOM05D004984 ORTHO05D006508 1.4e-177 626.7 432 73.6
CiPaw.06G160700 Carya illinoinensis HOM05D004984 ORTHO05D006508 1.9e-177 626.3 430 73.5
AT2G04305 Arabidopsis thaliana HOM05D004984 ORTHO05D006508 9.2e-177 624.0 425 73.6
AUR62030922 Chenopodium quinoa HOM05D004984 ORTHO05D006508 1.2e-176 623.6 421 72.9
Phvul.006G199900 Phaseolus vulgaris HOM05D004984 ORTHO05D006508 2.7e-176 622.5 433 72.3
EL10Ac9g22123 Beta vulgaris HOM05D004984 ORTHO05D006508 1.0e-175 620.5 423 73.0
TWI59G1371 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 1.0e-175 620.5 419 72.8
HPP92_019493 Vanilla planifolia HOM05D004984 ORTHO05D006508 1.3e-175 620.2 456 68.2
Lj6g0001628 Lotus japonicus HOM05D004984 ORTHO05D006508 2.3e-175 619.4 442 70.8
Lalb_Chr15g0090281 Lupinus albus HOM05D004984 ORTHO05D006508 3.9e-175 618.6 426 74.2
Sopen10g018750 Solanum pennellii HOM05D004984 ORTHO05D006508 1.9e-174 616.3 437 69.1
Solyc10g047820.1 Solanum lycopersicum HOM05D004984 ORTHO05D006508 1.2e-173 613.6 437 69.1
Peaxi162Scf00003g03028 Petunia axillaris HOM05D004984 ORTHO05D006508 2.8e-173 612.5 411 71.5
Nitab4.5_0006251g0010 Nicotiana tabacum HOM05D004984 ORTHO05D006508 3.6e-173 612.1 428 71.5
PGSC0003DMG400004399 Solanum tuberosum HOM05D004984 ORTHO05D006508 4.7e-173 611.7 437 68.6
DCAR_021894 Daucus carota HOM05D004984 ORTHO05D006508 8.1e-173 610.9 413 72.2
Nn5g29788 Nelumbo nucifera HOM05D004984 ORTHO05D006508 2.3e-172 609.4 424 71.0
unitig_744.g24196 Utricularia gibba HOM05D004984 ORTHO05D006508 3.5e-168 595.5 419 69.2
SGA_v2.0_scaffold32G12944 Striga asiatica HOM05D004984 ORTHO05D006508 2.3e-167 592.8 490 62.7
SEGI_07926 Sequoiadendron giganteum HOM05D004984 ORTHO05D006508 1.5e-166 590.1 455 65.9
MBI16_g10445_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 2.5e-166 589.3 445 67.4
Sabra16G0177800 Salix brachista HOM05D004984 ORTHO05D006508 1.8e-164 583.2 443 66.8
Nitab4.5_0004008g0090 Nicotiana tabacum HOM05D004984 ORTHO05D006508 4.1e-161 572.0 421 68.2
SalBow6G7210 Salvia bowleyana HOM05D004984 ORTHO05D006508 7.8e-160 567.8 401 69.6
HPP92_016673 Vanilla planifolia HOM05D004984 ORTHO05D006508 5.4e-153 545.0 415 63.4
Solyc08g069000.4 Solanum lycopersicum HOM05D004984 ORTHO05D006508 8.7e-151 537.7 340 78.2
Actinidia00320 Actinidia chinensis HOM05D004984 ORTHO05D006508 1.8e-148 530.0 427 64.9
Hma1.2p1_0383F.1_g140540 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 1.1e-145 520.8 397 67.8
Mapoly0036s0130 Marchantia polymorpha HOM05D004984 ORTHO05D006508 7.1e-145 518.1 429 60.1
unitig_0.g892 Utricularia gibba HOM05D000062 ORTHO05D000043 1.1e-140 504.2 357 68.6
Ah.01g007220 Amaranthus hybridus HOM05D004984 ORTHO05D006508 6.9e-140 501.5 328 74.7
MBI16_g43037_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 1.2e-139 500.7 350 69.4
Pp3c9_6010 Physcomitrium patens HOM05D004984 ORTHO05D006508 4.6e-136 488.8 436 58.5
Nitab4.5_0000088g0020 Nicotiana tabacum HOM05D004984 ORTHO05D006508 1.0e-135 487.6 419 60.4
AagrBONN_evm.TU.Sc2ySwM_368.1921 Anthoceros agrestis HOM05D004984 ORTHO05D006508 5.6e-134 481.9 435 56.6
Os08g0130000 Oryza sativa ssp. japonica HOM05D004984 ORTHO05D006508 9.6e-134 481.1 436 57.6
Pp3c15_5630 Physcomitrium patens HOM05D004984 ORTHO05D006508 4.5e-131 472.2 433 57.5
CDE04G0284 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 7.1e-129 464.9 390 62.8
Cpa.g.sc20.35 Carica papaya HOM05D004984 ORTHO05D006508 3.1e-124 449.5 302 70.2
Nitab4.5_0002290g0050 Nicotiana tabacum HOM05D004984 ORTHO05D006508 5.9e-107 392.1 336 61.3
MBI16_g42150_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 2.8e-101 373.2 265 68.7
Zm00001eb173240 Zea mays HOM05D004984 ORTHO05D006508 1.1e-89 334.7 256 65.2
Haze_10397 Corylus avellana HOM05D004984 ORTHO05D006508 6.8e-87 325.5 212 75.0
Cpa.g.sc20.38 Carica papaya HOM05D004984 ORTHO05D006508 1.2e-83 314.7 210 73.3
Lalb_Chr18g0060331 Lupinus albus HOM05D004984 ORTHO05D006508 2.7e-83 313.5 231 69.7
MBI16_g10446_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D243960 2.6e-78 297.0 424 42.2
Lalb_Chr18g0060321 Lupinus albus HOM05D004984 ORTHO05D006508 3.4e-70 270.0 198 68.7
DCAR_029279 Daucus carota HOM05D004984 ORTHO05D006508 6.4e-69 265.8 179 75.4
HanXRQChr09g0257011 Helianthus annuus HOM05D004984 ORTHO05D029932 1.6e-67 261.2 160 85.6
Lsat_1_v5_gn_7_73760 Lactuca sativa HOM05D004984 ORTHO05D006508 8.1e-56 222.2 137 83.2
MBI16_g47408_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D029932 1.3e-37 161.8 209 46.9
BolC3t20704H Brassica oleracea HOM05D004984 ORTHO05D040812 1.6e-35 154.8 150 54.7
C03p84240 Brassica napus HOM05D004984 ORTHO05D040812 9.6e-33 145.6 149 55.0
HanXRQChr14g0429701 Helianthus annuus HOM05D004984 ORTHO05D029932 5.6e-25 119.8 61 98.4
Nn4g23949 Nelumbo nucifera HOM05D004984 ORTHO05D006508 1.4e-12 78.6 56 64.3


User provided reference genes

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