Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0009481 Helianthus annuus HOM05D004676 ORTHO05D005661 6.4e-99 364.8 297 100.0
Lsat_1_v5_gn_5_170600 Lactuca sativa HOM05D004676 ORTHO05D005661 1.8e-69 266.9 138 96.4
Potri.001G148000 Populus trichocarpa HOM05D004676 ORTHO05D005661 2.2e-67 260.0 171 83.0
ECA248G3797 Erigeron canadensis HOM05D004676 ORTHO05D005661 2.9e-67 259.6 176 83.5
Sabra01G0116300 Salix brachista HOM05D004676 ORTHO05D005661 2.5e-66 256.5 181 74.6
Sabra01G0117800 Salix brachista HOM05D004676 ORTHO05D005661 2.5e-66 256.5 181 74.6
Lj1P153T22 Lonicera japonica HOM05D004676 ORTHO05D005661 2.1e-65 253.4 174 80.5
TAR633G1457 Trochodendron aralioides HOM05D004676 ORTHO05D005661 7.9e-65 251.5 183 77.6
ECA233G5350 Erigeron canadensis HOM05D004676 ORTHO05D005661 1.5e-63 247.3 177 80.8
Nn1g00565 Nelumbo nucifera HOM05D004676 ORTHO05D005661 3.3e-63 246.1 184 74.5
Hma1.2p1_0418F.1_g149200 Hydrangea macrophylla HOM05D004676 ORTHO05D005661 4.3e-63 245.7 182 76.9
Manes.02G133000 Manihot esculenta HOM05D004676 ORTHO05D005661 4.3e-63 245.7 170 72.4
Dinv12426 Davidia involucrata HOM05D004676 ORTHO05D005661 7.4e-63 245.0 182 76.9
Rhsim01G0227600 Rhododendron simsii HOM05D004676 ORTHO05D005661 7.4e-63 245.0 182 79.7
Manes.01G173800 Manihot esculenta HOM05D004676 ORTHO05D005661 1.3e-62 244.2 172 80.2
Duzib168G2248 Durio zibethinus HOM05D004676 ORTHO05D005661 2.8e-62 243.0 173 79.2
Gohir.A07G098600 Gossypium hirsutum HOM05D004676 ORTHO05D005661 3.7e-62 242.7 176 76.7
Gohir.D07G102900 Gossypium hirsutum HOM05D004676 ORTHO05D005661 3.7e-62 242.7 176 76.7
Gorai.001G110800 Gossypium raimondii HOM05D004676 ORTHO05D005661 3.7e-62 242.7 176 76.7
unitig_0.g1557 Utricularia gibba HOM05D004676 ORTHO05D005661 6.3e-62 241.9 180 76.7
Thecc.09G321600 Theobroma cacao HOM05D004676 ORTHO05D005661 1.4e-61 240.7 178 76.4
Prupe.6G077300 Prunus persica HOM05D004676 ORTHO05D005661 1.8e-61 240.4 183 73.8
Haze_24097 Corylus avellana HOM05D004676 ORTHO05D005661 2.4e-61 240.0 178 74.7
Cfa011505 Carpinus fangiana HOM05D004676 ORTHO05D005661 9.1e-61 238.0 180 73.3
CsaV3_6G016860 Cucumis sativus L. HOM05D004676 ORTHO05D005661 9.1e-61 238.0 176 76.7
vmacro05212 Vaccinium macrocarpon HOM05D004676 ORTHO05D005661 9.1e-61 238.0 146 84.2
SGA_v2.0_scaffold154G37155 Striga asiatica HOM05D004676 ORTHO05D005661 2.6e-60 236.5 185 74.1
unitig_747.g22032 Utricularia gibba HOM05D004676 ORTHO05D005661 2.6e-60 236.5 184 75.5
CiPaw.13G094200 Carya illinoinensis HOM05D004676 ORTHO05D005661 5.9e-60 235.3 178 75.3
Haze_12047 Corylus avellana HOM05D004676 ORTHO05D005661 5.9e-60 235.3 179 75.4
Peaxi162Scf00045g00052 Petunia axillaris HOM05D004676 ORTHO05D005661 7.7e-60 235.0 182 75.8
Cpa.g.sc161.42 Carica papaya HOM05D004676 ORTHO05D005661 1.0e-59 234.6 171 77.8
MELO3C025917.2 Cucumis melo HOM05D004676 ORTHO05D005661 1.0e-59 234.6 170 78.2
Oeu019194.1 Olea europaea HOM05D004676 ORTHO05D005661 1.0e-59 234.6 181 75.7
Cpa.g.sc81.149 Carica papaya HOM05D004676 ORTHO05D005661 2.2e-59 233.4 180 75.0
Nitab4.5_0005880g0060 Nicotiana tabacum HOM05D004676 ORTHO05D005661 2.2e-59 233.4 181 77.3
RcHm_v2.0_Chr5g0064541 Rosa chinensis HOM05D004676 ORTHO05D005661 2.2e-59 233.4 181 75.1
Nitab4.5_0003154g0010 Nicotiana tabacum HOM05D004676 ORTHO05D005661 3.8e-59 232.6 180 76.1
Nitab4.5_0001424g0070 Nicotiana tabacum HOM05D004676 ORTHO05D005661 5.0e-59 232.3 181 76.8
TAR100G0004 Trochodendron aralioides HOM05D004676 ORTHO05D005661 5.0e-59 232.3 183 72.1
Actinidia34405 Actinidia chinensis HOM05D004676 ORTHO05D005661 8.5e-59 231.5 174 71.8
DCAR_025381 Daucus carota HOM05D004676 ORTHO05D005661 8.5e-59 231.5 188 75.0
QL09p008735 Quercus lobata HOM05D004676 ORTHO05D005661 1.4e-58 230.7 151 78.1
THA.LOC104800662 Tarenaya hassleriana HOM05D004676 ORTHO05D005661 1.4e-58 230.7 173 78.0
Sc21g0005490 Simmondsia chinensis HOM05D004676 ORTHO05D005661 3.2e-58 229.6 182 74.7
Thecc.09G321800 Theobroma cacao HOM05D004676 ORTHO05D005661 3.2e-58 229.6 172 76.7
ClCG02G020150 Citrullus lanatus HOM05D004676 ORTHO05D005661 4.2e-58 229.2 130 83.8
Ciclev10028807m.g Citrus clementina HOM05D004676 ORTHO05D005661 4.2e-58 229.2 185 73.0
Eucgr.E01963 Eucalyptus grandis HOM05D004676 ORTHO05D005661 5.5e-58 228.8 185 74.1
SGA_v2.0_scaffold47G17549 Striga asiatica HOM05D004676 ORTHO05D005661 7.2e-58 228.4 186 72.0
THA.LOC104826325 Tarenaya hassleriana HOM05D004676 ORTHO05D005661 7.2e-58 228.4 180 76.1
MD03G1093300 Malus domestica HOM05D004676 ORTHO05D005661 9.4e-58 228.0 180 72.2
Actinidia23939 Actinidia chinensis HOM05D004676 ORTHO05D005661 1.2e-57 227.6 175 73.1
Eucgr.E01882 Eucalyptus grandis HOM05D004676 ORTHO05D005661 1.6e-57 227.3 136 83.1
MD11G1108100 Malus domestica HOM05D004676 ORTHO05D005661 1.6e-57 227.3 175 74.3
PGR119G2251 Punica granatum HOM05D004676 ORTHO05D005661 1.6e-57 227.3 186 73.7
Atru.chr3.3906 Acer truncatum HOM05D004676 ORTHO05D005661 2.7e-57 226.5 185 73.0
CAN.G137.34 Capsicum annuum HOM05D004676 ORTHO05D005661 3.6e-57 226.1 180 73.3
PGSC0003DMG400018489 Solanum tuberosum HOM05D004676 ORTHO05D005661 6.1e-57 225.3 181 72.4
Solyc08g005450.3 Solanum lycopersicum HOM05D004676 ORTHO05D005661 1.0e-56 224.6 181 72.4
Sopen08g001490 Solanum pennellii HOM05D004676 ORTHO05D005661 2.3e-56 223.4 181 71.8
AT2G28910 Arabidopsis thaliana HOM05D004676 ORTHO05D005661 3.0e-56 223.0 171 77.2
TAR677G0002 Trochodendron aralioides HOM05D004676 ORTHO05D005661 3.0e-56 223.0 179 70.4
SHI01165 Sapria himalayana HOM05D004676 ORTHO05D005661 5.1e-56 222.2 171 69.6
CiPaw.14G068300 Carya illinoinensis HOM05D004676 ORTHO05D005661 8.8e-56 221.5 182 71.4
DCAR_024536 Daucus carota HOM05D004676 ORTHO05D005661 8.8e-56 221.5 140 81.4
Oeu051436.2 Olea europaea HOM05D004676 ORTHO05D005661 8.8e-56 221.5 183 70.5
Sp4g11720 Schrenkiella parvula HOM05D004676 ORTHO05D005661 2.0e-55 220.3 173 74.0
Migut.L00671 Erythranthe guttata HOM05D004676 ORTHO05D005661 3.3e-55 219.5 181 71.3
FAN11G0391 Fragaria x ananassa HOM05D004676 ORTHO05D005661 4.4e-55 219.2 183 69.4
FAN16G2805 Fragaria x ananassa HOM05D004676 ORTHO05D005661 4.4e-55 219.2 183 69.4
Ah.04g160390 Amaranthus hybridus HOM05D004676 ORTHO05D005661 5.7e-55 218.8 177 73.4
Aa31LG5G7310 Aethionema arabicum HOM05D004676 ORTHO05D005661 7.4e-55 218.4 176 71.6
Aqoxy7G03598 Aquilegia oxysepala HOM05D004676 ORTHO05D005661 9.7e-55 218.0 137 80.3
FAN21G2159 Fragaria x ananassa HOM05D004676 ORTHO05D005661 9.7e-55 218.0 185 69.7
FAN25G1996 Fragaria x ananassa HOM05D004676 ORTHO05D005661 9.7e-55 218.0 184 69.0
Hund18907 Selenicereus undatus HOM05D004676 ORTHO05D005661 9.7e-55 218.0 184 70.7
Carub.0004s0990 Capsella rubella HOM05D004676 ORTHO05D005661 1.3e-54 217.6 171 75.4
TAR588G0001 Trochodendron aralioides HOM05D004676 ORTHO05D005661 1.3e-54 217.6 132 78.8
CARHR122080 Cardamine hirsuta HOM05D004676 ORTHO05D005661 1.7e-54 217.2 171 73.7
TWI75G1679 Tripterygium wilfordii HOM05D004676 ORTHO05D005661 2.8e-54 216.5 149 75.8
Migut.L00698 Erythranthe guttata HOM05D004676 ORTHO05D005661 4.8e-54 215.7 182 72.0
PSO151G0082 Papaver somniferum HOM05D004676 ORTHO05D005661 4.8e-54 215.7 182 69.8
Migut.D02100 Erythranthe guttata HOM05D004676 ORTHO05D005661 6.3e-54 215.3 178 70.8
FvH4_3g36111 Fragaria vesca HOM05D004676 ORTHO05D005661 6.3e-54 215.3 183 68.9
MBI14_g16284_MAGBIO Magnolia biondii HOM05D004676 ORTHO05D005661 6.3e-54 215.3 181 72.4
PSO339G5531 Papaver somniferum HOM05D004676 ORTHO05D005661 1.1e-53 214.5 182 69.8
AL4G23440 Arabidopsis lyrata HOM05D004676 ORTHO05D005661 1.4e-53 214.2 170 72.9
BcaC02g11024 Brassica carinata HOM05D004676 ORTHO05D005661 1.4e-53 214.2 171 73.1
C04p22070 Brassica napus HOM05D004676 ORTHO05D005661 1.4e-53 214.2 171 73.1
BolC4t23730H Brassica oleracea HOM05D004676 ORTHO05D005661 1.4e-53 214.2 171 73.1
AUR62000799 Chenopodium quinoa HOM05D004676 ORTHO05D005661 4.1e-53 212.6 176 71.6
CDE04G1893 Ceratophyllum demersum HOM05D004676 ORTHO05D005661 7.0e-53 211.8 174 72.4
CANSAT21G2535 Cannabis sativa HOM05D004676 ORTHO05D005661 9.1e-53 211.5 184 67.9
AUR62005169 Chenopodium quinoa HOM05D004676 ORTHO05D005661 9.1e-53 211.5 176 71.0
Psat0s2898g0040 Pisum sativum HOM05D004676 ORTHO05D005661 1.5e-52 210.7 180 68.9
Glyma.20G104700 Glycine max HOM05D004676 ORTHO05D005661 2.0e-52 210.3 180 68.3
Phvul.007G016200 Phaseolus vulgaris HOM05D004676 ORTHO05D005661 2.0e-52 210.3 181 68.0
Sed0011846 Sechium edule HOM05D004676 ORTHO05D005661 2.6e-52 209.9 180 70.6
Cc01_g12890 Coffea canephora HOM05D004676 ORTHO05D005661 3.5e-52 209.5 185 69.2
ATR0733G034 Amborella trichopoda HOM05D004676 ORTHO05D005661 4.5e-52 209.1 185 67.6
A07p19390 Brassica napus HOM05D004676 ORTHO05D005661 5.9e-52 208.8 171 71.3
TWI79G0464 Tripterygium wilfordii HOM05D004676 ORTHO05D005661 1.0e-51 208.0 149 73.8
Ca_11220_v3 Cicer arietinum L. HOM05D004676 ORTHO05D005661 1.3e-51 207.6 175 68.0
EL10Ac4g09397 Beta vulgaris HOM05D004676 ORTHO05D005661 6.5e-51 205.3 185 69.2
CDE07G0255 Ceratophyllum demersum HOM05D004676 ORTHO05D005661 1.4e-50 204.1 173 68.8
BolC4t27336H Brassica oleracea HOM05D004676 ORTHO05D005661 2.5e-50 203.4 170 69.4
TPR.G18864 Trifolium pratense HOM05D004676 ORTHO05D005661 2.5e-50 203.4 181 66.3
Glyma.10G284600 Glycine max HOM05D004676 ORTHO05D005661 3.2e-50 203.0 178 65.7
RcHm_v2.0_Chr5g0064551 Rosa chinensis HOM05D004676 ORTHO05D005661 9.4e-50 201.4 175 67.4
VMungo0720G1898 Vigna mungo HOM05D004676 ORTHO05D005661 1.2e-49 201.1 181 66.3
SEGI_40255 Sequoiadendron giganteum HOM05D004676 ORTHO05D005661 6.1e-49 198.7 179 62.0
Ca_09918_v3 Cicer arietinum L. HOM05D004676 ORTHO05D005661 1.0e-48 198.0 177 65.5
Eucgr.J02052 Eucalyptus grandis HOM05D004676 ORTHO05D005661 1.8e-48 197.2 137 71.5
Lj5g0019317 Lotus japonicus HOM05D004676 ORTHO05D005661 1.8e-48 197.2 183 59.6
BcaB02g10212 Brassica carinata HOM05D004676 ORTHO05D005661 1.5e-47 194.1 174 70.1
Lalb_Chr02g0143571 Lupinus albus HOM05D004676 ORTHO05D005661 3.3e-47 193.0 180 63.3
Lalb_Chr06g0163861 Lupinus albus HOM05D004676 ORTHO05D005661 4.4e-47 192.6 181 61.9
arahy.Tifrunner.gnm1.ann1.ID2MIU Arachis hypogaea HOM05D004676 ORTHO05D005661 1.3e-46 191.0 184 60.9
HPP92_003389 Vanilla planifolia HOM05D004676 ORTHO05D005661 1.3e-46 191.0 174 66.1
TAR383G0008 Trochodendron aralioides HOM05D004676 ORTHO05D005661 1.7e-46 190.7 183 63.9
TAR455G0002 Trochodendron aralioides HOM05D004676 ORTHO05D005661 1.7e-46 190.7 183 63.9
A04p05090 Brassica napus HOM05D004676 ORTHO05D005661 1.1e-45 188.0 170 68.8
A04p21940 Brassica napus HOM05D004676 ORTHO05D005661 1.1e-45 188.0 170 68.8
BraA04t17761Z Brassica rapa HOM05D004676 ORTHO05D005661 1.1e-45 188.0 170 68.8
BraA07t29644Z Brassica rapa HOM05D004676 ORTHO05D005661 1.4e-45 187.6 161 68.3
RcHm_v2.0_Chr5g0064841 Rosa chinensis HOM05D004676 ORTHO05D005661 1.8e-45 187.2 147 65.3
ECA233G0785 Erigeron canadensis HOM05D004676 ORTHO05D005661 4.1e-45 186.0 179 65.9
COL.COLO4_18509 Corchorus olitorius HOM05D004676 ORTHO05D005661 3.8e-43 179.5 140 64.3
Pp3c8_12040 Physcomitrium patens HOM05D004676 ORTHO05D005661 3.8e-43 179.5 199 55.3
FvH4_3g36120 Fragaria vesca HOM05D002246 ORTHO05D002308 6.5e-43 178.7 175 61.1
Mapoly0006s0051 Marchantia polymorpha HOM05D004676 ORTHO05D005661 4.2e-42 176.0 182 61.0
ECA233G0017 Erigeron canadensis HOM05D004676 ORTHO05D005661 7.2e-42 175.3 179 63.7
FAN11G1736 Fragaria x ananassa HOM05D002246 ORTHO05D002308 1.2e-41 174.5 175 61.1
AagrBONN_evm.TU.Sc2ySwM_228.4612 Anthoceros agrestis HOM05D004676 ORTHO05D005661 2.7e-41 173.3 174 62.6
BcaC02g08125 Brassica carinata HOM05D004676 ORTHO05D005661 2.7e-41 173.3 170 63.5
Os09g0103700 Oryza sativa ssp. japonica HOM05D004676 ORTHO05D005661 3.4e-39 166.4 136 61.8
Zm00001eb307410 Zea mays HOM05D004676 ORTHO05D005661 1.8e-37 160.6 131 64.1
Zm00001eb095710 Zea mays HOM05D004676 ORTHO05D005661 3.1e-37 159.8 140 62.9
Os05g0297400 Oryza sativa ssp. japonica HOM05D004676 ORTHO05D005661 2.2e-35 153.7 193 51.8
SMO117G0168 Selaginella moellendorffii HOM05D004676 ORTHO05D005661 8.5e-35 151.8 170 59.4
ATR0693G379 Amborella trichopoda HOM05D004676 ORTHO05D005661 2.5e-34 150.2 181 57.5
ECA233G4946 Erigeron canadensis HOM05D004676 ORTHO05D005661 1.4e-32 144.4 179 58.1
C04p58100 Brassica napus HOM05D004676 ORTHO05D005661 2.6e-31 140.2 97 74.2
Eucgr.E01961 Eucalyptus grandis HOM05D004676 ORTHO05D005661 1.2e-28 131.3 136 64.0
BraA07t30700Z Brassica rapa HOM05D004676 ORTHO05D005661 2.9e-27 126.7 91 71.4
CBR_g53496 Chara braunii HOM05D004676 ORTHO05D137281 3.8e-27 126.3 97 66.0
RcHm_v2.0_Chr5g0064811 Rosa chinensis HOM05D004676 ORTHO05D005661 2.5e-26 123.6 174 50.6
MD11G1107700 Malus domestica HOM05D004676 ORTHO05D005661 3.6e-25 119.8 72 79.2
HPP92_003385 Vanilla planifolia HOM05D004676 ORTHO05D005661 1.8e-24 117.5 112 65.2
TAR625G0807 Trochodendron aralioides HOM05D004676 ORTHO05D005661 4.0e-24 116.3 139 58.3
ECA247G4102 Erigeron canadensis HOM05D004676 ORTHO05D005661 5.0e-19 99.4 112 53.6
Dinv42954 Davidia involucrata HOM05D004736 ORTHO05D006424 8.6e-19 98.6 49 93.9
Dinv43146 Davidia involucrata HOM05D004736 ORTHO05D006424 8.6e-19 98.6 49 93.9
ECA233G2734 Erigeron canadensis HOM05D004676 ORTHO05D005661 1.7e-14 84.3 45 88.9
SEGI_06382 Sequoiadendron giganteum HOM05D004676 ORTHO05D005661 1.1e-08 65.1 40 72.5
Cre09.g389652 Chlamydomonas reinhardtii HOM05D004676 ORTHO05D005661 2.6e-07 60.5 120 35.0


User provided reference genes

Program Settings