Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0008631 Helianthus annuus HOM05D004060 ORTHO05D004967 1.8e-92 343.2 273 100.0
Lsat_1_v5_gn_5_162320 Lactuca sativa HOM05D004060 ORTHO05D004967 7.5e-54 214.9 276 75.4
ECA248G2911 Erigeron canadensis HOM05D004060 ORTHO05D004967 9.9e-46 188.0 284 68.3
HanXRQChr10g0300071 Helianthus annuus HOM05D004060 ORTHO05D004967 2.4e-39 166.8 256 69.5
Duzib128G1686 Durio zibethinus HOM05D004060 ORTHO05D004967 9.9e-38 161.4 254 63.0
TPR.G21399 Trifolium pratense HOM05D004060 ORTHO05D004967 2.4e-36 156.8 284 62.0
Hma1.2p1_0696F.1_g204640 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 4.2e-36 156.0 285 63.2
Thecc.05G159200 Theobroma cacao HOM05D004060 ORTHO05D004967 7.1e-36 155.2 253 68.0
Dinv02133 Davidia involucrata HOM05D004060 ORTHO05D004967 2.1e-35 153.7 281 63.3
PGR004G1680 Punica granatum HOM05D004060 ORTHO05D004967 2.7e-35 153.3 278 58.6
Ciclev10005594m.g Citrus clementina HOM05D004060 ORTHO05D004967 4.6e-35 152.5 254 68.5
Cc06_g16910 Coffea canephora HOM05D004060 ORTHO05D004967 1.7e-34 150.6 255 68.6
Oeu033785.1 Olea europaea HOM05D004060 ORTHO05D004967 3.0e-34 149.8 259 64.1
Actinidia09345 Actinidia chinensis HOM05D004060 ORTHO05D004967 6.6e-34 148.7 260 66.9
Oeu064312.1 Olea europaea HOM05D004060 ORTHO05D004967 6.6e-34 148.7 251 56.6
Potri.016G054400 Populus trichocarpa HOM05D004060 ORTHO05D004967 8.7e-34 148.3 282 62.8
Cfa016842 Carpinus fangiana HOM05D004060 ORTHO05D004967 1.5e-33 147.5 289 59.9
Haze_19884 Corylus avellana HOM05D004060 ORTHO05D004967 1.5e-33 147.5 287 59.2
Haze_19892 Corylus avellana HOM05D004060 ORTHO05D004967 1.5e-33 147.5 288 59.4
DCAR_013590 Daucus carota HOM05D004060 ORTHO05D004967 1.5e-33 147.5 284 66.2
Phvul.007G253600 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 1.5e-33 147.5 291 59.1
QL07p021067 Quercus lobata HOM05D004060 ORTHO05D004967 1.5e-33 147.5 289 63.0
CSS0022151 Camellia sinensis var. sinensis HOM05D004060 ORTHO05D004967 1.9e-33 147.1 277 64.3
COL.COLO4_28207 Corchorus olitorius HOM05D004060 ORTHO05D004967 9.6e-33 144.8 285 62.8
TAR057G0003 Trochodendron aralioides HOM05D004060 ORTHO05D004967 1.6e-32 144.1 260 64.6
Duzib106G1229 Durio zibethinus HOM05D004060 ORTHO05D004967 2.1e-32 143.7 254 67.7
TWI74G0684 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 2.8e-32 143.3 256 64.8
VMungo1383G2713 Vigna mungo HOM05D004060 ORTHO05D004967 2.8e-32 143.3 279 61.3
Medtr1g052560 Medicago truncatula HOM05D004060 ORTHO05D004967 3.6e-32 142.9 283 57.2
Nitab4.5_0002841g0040 Nicotiana tabacum HOM05D004060 ORTHO05D004967 3.6e-32 142.9 293 61.4
TAR369G1158 Trochodendron aralioides HOM05D004060 ORTHO05D004967 3.6e-32 142.9 261 63.2
Duzib093G0278 Durio zibethinus HOM05D004060 ORTHO05D004967 6.2e-32 142.1 171 55.6
Dinv02134 Davidia involucrata HOM05D004060 ORTHO05D004967 8.1e-32 141.7 273 58.2
Eucgr.A02379 Eucalyptus grandis HOM05D004060 ORTHO05D004967 8.1e-32 141.7 264 64.4
RcHm_v2.0_Chr3g0481501 Rosa chinensis HOM05D004060 ORTHO05D004967 1.4e-31 141.0 273 61.2
Prupe.7G064800 Prunus persica HOM05D004060 ORTHO05D004967 2.4e-31 140.2 273 61.9
Gohir.A11G312000 Gossypium hirsutum HOM05D004060 ORTHO05D004967 3.1e-31 139.8 262 65.6
Actinidia24529 Actinidia chinensis HOM05D004060 ORTHO05D004967 6.9e-31 138.7 177 54.8
FvH4_6g23510 Fragaria vesca HOM05D004060 ORTHO05D004967 6.9e-31 138.7 269 62.1
FAN09G1680 Fragaria x ananassa HOM05D004060 ORTHO05D004967 6.9e-31 138.7 271 60.5
FAN14G3078 Fragaria x ananassa HOM05D004060 ORTHO05D004967 6.9e-31 138.7 269 62.1
Ca_26888_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 9.0e-31 138.3 299 61.5
MELO3C009714.2 Cucumis melo HOM05D004060 ORTHO05D004967 9.0e-31 138.3 287 59.6
Lsat_1_v5_gn_9_27220 Lactuca sativa HOM05D004060 ORTHO05D004967 9.0e-31 138.3 211 52.6
Cpa.g.sc92.28 Carica papaya HOM05D004060 ORTHO05D004967 1.2e-30 137.9 260 49.6
CiPaw.10G032000 Carya illinoinensis HOM05D004060 ORTHO05D004967 1.2e-30 137.9 296 61.5
MBI02_g05658_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 1.2e-30 137.9 258 54.3
MSTRG.6438 Avicennia marina HOM05D004060 ORTHO05D004967 1.5e-30 137.5 259 62.9
FAN02G3665 Fragaria x ananassa HOM05D004060 ORTHO05D004967 2.0e-30 137.1 271 60.5
FAN05G0004 Fragaria x ananassa HOM05D004060 ORTHO05D004967 2.6e-30 136.7 271 60.5
Potri.006G053200 Populus trichocarpa HOM05D004060 ORTHO05D004967 2.6e-30 136.7 262 65.3
Nitab4.5_0001509g0060 Nicotiana tabacum HOM05D004060 ORTHO05D004967 3.4e-30 136.3 265 64.9
Phvul.001G135500 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 7.6e-30 135.2 172 54.7
Sabra06G0037600 Salix brachista HOM05D004060 ORTHO05D004967 7.6e-30 135.2 256 65.6
Gohir.D11G328600 Gossypium hirsutum HOM05D004060 ORTHO05D004967 9.9e-30 134.8 262 64.5
Gorai.007G359900 Gossypium raimondii HOM05D004060 ORTHO05D004967 9.9e-30 134.8 262 64.5
Manes.08G049300 Manihot esculenta HOM05D004060 ORTHO05D004967 9.9e-30 134.8 254 65.4
Manes.09G024700 Manihot esculenta HOM05D004060 ORTHO05D004967 9.9e-30 134.8 260 63.8
PGSC0003DMG400023721 Solanum tuberosum HOM05D004060 ORTHO05D004967 9.9e-30 134.8 263 62.7
CsaV3_3G039720 Cucumis sativus L. HOM05D004060 ORTHO05D004967 1.7e-29 134.0 286 59.1
Nitab4.5_0000733g0190 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.7e-29 134.0 269 64.3
Rhsim03G0018200 Rhododendron simsii HOM05D004060 ORTHO05D004967 1.7e-29 134.0 257 63.0
Gohir.A11G312100 Gossypium hirsutum HOM05D004060 ORTHO05D004967 3.8e-29 132.9 262 64.1
Lju124C36T16 Lonicera japonica HOM05D004060 ORTHO05D004967 4.9e-29 132.5 185 54.6
Nitab4.5_0001663g0020 Nicotiana tabacum HOM05D004060 ORTHO05D004967 6.4e-29 132.1 269 62.8
Medtr7g091990 Medicago truncatula HOM05D004060 ORTHO05D004967 1.1e-28 131.3 283 59.7
CANSAT80G2886 Cannabis sativa HOM05D004060 ORTHO05D004967 1.9e-28 130.6 270 61.1
ClCG10G016620 Citrullus lanatus HOM05D004060 ORTHO05D004967 1.9e-28 130.6 286 58.4
ECA247G2970 Erigeron canadensis HOM05D004060 ORTHO05D004967 2.4e-28 130.2 147 59.9
vmacro22363 Vaccinium macrocarpon HOM05D004060 ORTHO05D004967 2.4e-28 130.2 257 61.1
Sopen10g030840 Solanum pennellii HOM05D004060 ORTHO05D004967 5.4e-28 129.0 260 61.2
Peaxi162Scf01287g00012 Petunia axillaris HOM05D004060 ORTHO05D004967 7.1e-28 128.6 229 64.6
Migut.J01771 Erythranthe guttata HOM05D004060 ORTHO05D004967 9.3e-28 128.3 261 62.5
Nn2g15346 Nelumbo nucifera HOM05D004060 ORTHO05D004967 1.2e-27 127.9 172 53.5
VMungo0720G0143 Vigna mungo HOM05D004060 ORTHO05D004967 1.2e-27 127.9 291 56.7
Ca_08471_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 2.1e-27 127.1 173 52.6
CAN.G128.15 Capsicum annuum HOM05D004060 ORTHO05D004967 2.7e-27 126.7 259 62.5
Dinv18064 Davidia involucrata HOM05D004060 ORTHO05D004967 7.9e-27 125.2 197 48.2
MD14G1069500 Malus domestica HOM05D004060 ORTHO05D004967 1.3e-26 124.4 279 57.7
TWI77G1037 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 3.0e-26 123.2 254 64.2
TAR633G1984 Trochodendron aralioides HOM05D004060 ORTHO05D004967 3.9e-26 122.9 253 57.7
Lalb_Chr20g0110781 Lupinus albus HOM05D004060 ORTHO05D004967 5.1e-26 122.5 294 56.5
Sc13g0001870 Simmondsia chinensis HOM05D004060 ORTHO05D004967 5.1e-26 122.5 263 60.8
arahy.Tifrunner.gnm1.ann1.L89JBM Arachis hypogaea HOM05D004060 ORTHO05D004967 8.7e-26 121.7 284 58.5
Nn7g36226 Nelumbo nucifera HOM05D004060 ORTHO05D004967 3.3e-25 119.8 170 50.6
Aa31LG10G12370 Aethionema arabicum HOM05D004060 ORTHO05D004967 5.6e-25 119.0 262 61.1
Glyma.02G182600 Glycine max HOM05D004060 ORTHO05D004967 7.4e-25 118.6 303 54.1
FAN05G5649 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.3e-24 117.9 270 58.5
Aqoxy1G00285 Aquilegia oxysepala HOM05D004060 ORTHO05D004967 1.6e-24 117.5 258 57.8
TWI53G1485 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 2.1e-24 117.1 259 62.2
Psat3g079320 Pisum sativum HOM05D004060 ORTHO05D004967 3.7e-24 116.3 266 61.3
MSTRG.19874 Avicennia marina HOM05D004060 ORTHO05D004967 1.4e-23 114.4 262 56.5
Sed0004660 Sechium edule HOM05D004060 ORTHO05D004967 3.1e-23 113.2 294 57.8
Atru.chr1.1058 Acer truncatum HOM05D004060 ORTHO05D004967 4.0e-23 112.8 176 52.3
TPR.G3730 Trifolium pratense HOM05D004060 ORTHO05D004967 5.3e-23 112.5 261 61.3
EL10Ac3g07036 Beta vulgaris HOM05D004060 ORTHO05D004967 6.9e-23 112.1 298 53.7
Hma1.2p1_0247F.1_g101840 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 6.9e-23 112.1 272 60.3
Oeu017953.1 Olea europaea HOM05D004060 ORTHO05D004967 9.0e-23 111.7 249 50.2
CARHR167760 Cardamine hirsuta HOM05D004060 ORTHO05D004967 1.2e-22 111.3 266 59.0
Os07g0569100 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 2.6e-22 110.2 267 58.8
CiPaw.09G036400 Carya illinoinensis HOM05D004060 ORTHO05D004967 3.4e-22 109.8 232 67.2
Os03g0808300 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 3.4e-22 109.8 252 55.2
HPP92_019624 Vanilla planifolia HOM05D004060 ORTHO05D004967 4.5e-22 109.4 166 45.8
Glyma.19G141100 Glycine max HOM05D004060 ORTHO05D004967 7.6e-22 108.6 253 61.7
SalBow6G3128 Salvia bowleyana HOM05D004060 ORTHO05D004967 1.0e-21 108.2 254 61.0
Carub.0005s2438 Capsella rubella HOM05D004060 ORTHO05D004967 1.3e-21 107.8 273 57.5
PSO339G1536 Papaver somniferum HOM05D004060 ORTHO05D004967 1.7e-21 107.5 290 53.4
Solyc04g015520.3 Solanum lycopersicum HOM05D004060 ORTHO05D004967 2.2e-21 107.1 276 55.1
PSO384G1698 Papaver somniferum HOM05D004060 ORTHO05D004967 2.9e-21 106.7 207 44.4
Glyma.03G138100 Glycine max HOM05D004060 ORTHO05D004967 8.4e-21 105.1 171 49.1
Lalb_Chr25g0287361 Lupinus albus HOM05D004060 ORTHO05D004967 1.4e-20 104.4 260 57.3
Zm00001eb107230 Zea mays HOM05D004060 ORTHO05D004967 1.9e-20 104.0 250 49.6
AL5G39120 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 2.5e-20 103.6 268 56.7
DCAR_020477 Daucus carota HOM05D004060 ORTHO05D004967 4.2e-20 102.8 268 57.5
THA.LOC104824453 Tarenaya hassleriana HOM05D004060 ORTHO05D004967 4.2e-20 102.8 266 59.4
AT3G57540 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 9.3e-20 101.7 269 56.1
Thhalv10017761m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 9.3e-20 101.7 253 58.1
BcaNung07195 Brassica carinata HOM05D004060 ORTHO05D004967 1.2e-19 101.3 251 53.4
BcaC07g40371 Brassica carinata HOM05D004060 ORTHO05D004967 2.1e-19 100.5 265 56.2
C08p33070 Brassica napus HOM05D004060 ORTHO05D004967 2.1e-19 100.5 265 56.2
BolC8t50907H Brassica oleracea HOM05D004060 ORTHO05D004967 2.1e-19 100.5 265 56.2
SGA_v2.0_scaffold69G23102 Striga asiatica HOM05D004060 ORTHO05D004967 2.7e-19 100.1 169 45.0
Peaxi162Scf00493g00316 Petunia axillaris HOM05D004060 ORTHO05D004967 3.5e-19 99.8 214 39.7
Carub.0004s2418 Capsella rubella HOM05D004060 ORTHO05D004967 7.9e-19 98.6 230 61.7
Lj1g0010539 Lotus japonicus HOM05D004060 ORTHO05D004967 1.0e-18 98.2 266 57.1
Zm00001eb061820 Zea mays HOM05D004060 ORTHO05D004967 1.3e-18 97.8 174 39.7
A05p02610 Brassica napus HOM05D004060 ORTHO05D004967 3.9e-18 96.3 256 54.3
BraA05t19254Z Brassica rapa HOM05D004060 ORTHO05D004967 3.9e-18 96.3 256 54.3
Sopen04g007590 Solanum pennellii HOM05D004060 ORTHO05D004967 5.1e-18 95.9 281 52.0
AL4G40200 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 6.7e-18 95.5 279 53.8
arahy.Tifrunner.gnm1.ann1.AM9K84 Arachis hypogaea HOM05D004060 ORTHO05D004967 6.7e-18 95.5 285 56.5
MSTRG.10823 Avicennia marina HOM05D004060 ORTHO05D004967 6.7e-18 95.5 216 49.5
C04p03110 Brassica napus HOM05D004060 ORTHO05D004967 6.7e-18 95.5 253 46.6
BolC4t21952H Brassica oleracea HOM05D004060 ORTHO05D004967 6.7e-18 95.5 253 46.6
CARHR136960 Cardamine hirsuta HOM05D004060 ORTHO05D004967 6.7e-18 95.5 249 45.8
A09p50400 Brassica napus HOM05D004060 ORTHO05D004967 1.5e-17 94.4 270 55.9
Sp5g05050 Schrenkiella parvula HOM05D004060 ORTHO05D004967 1.9e-17 94.0 261 55.2
PGSC0003DMG400027238 Solanum tuberosum HOM05D004060 ORTHO05D004967 1.9e-17 94.0 281 51.2
BraA09t40492Z Brassica rapa HOM05D004060 ORTHO05D004967 2.5e-17 93.6 269 54.6
AT2G41870 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 3.3e-17 93.2 270 57.0
Lj2C380T14 Lonicera japonica HOM05D004060 ORTHO05D004967 3.3e-17 93.2 135 50.4
MD12G1072300 Malus domestica HOM05D004060 ORTHO05D004967 5.7e-17 92.4 290 53.1
Ca_29692_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 9.6e-17 91.7 163 76.7
Zm00001eb324720 Zea mays HOM05D004060 ORTHO05D004967 2.1e-16 90.5 275 54.9
CAN.G676.50 Capsicum annuum HOM05D004060 ORTHO05D004967 2.8e-16 90.1 251 59.0
Thhalv10006130m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 3.7e-16 89.7 273 54.6
ATR0332G033 Amborella trichopoda HOM05D004060 ORTHO05D004967 4.8e-16 89.4 251 53.0
BcaC07g40387 Brassica carinata HOM05D004060 ORTHO05D004967 1.4e-15 87.8 265 54.0
SalBow1G5147 Salvia bowleyana HOM05D004060 ORTHO05D004967 2.4e-15 87.0 248 55.6
Solyc10g080230.2 Solanum lycopersicum HOM05D004060 ORTHO05D004967 2.4e-15 87.0 133 45.1
arahy.Tifrunner.gnm1.ann1.GL61MB Arachis hypogaea HOM05D004060 ORTHO05D004967 5.3e-15 85.9 249 57.8
MBI04_g36073_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 2.6e-14 83.6 281 30.2
Sp4g24140 Schrenkiella parvula HOM05D004060 ORTHO05D004967 3.4e-14 83.2 170 43.5
Glyma.10G099400 Glycine max HOM05D004060 ORTHO05D004967 1.3e-13 81.3 300 48.0
BcaB02g07595 Brassica carinata HOM05D004060 ORTHO05D004967 7.1e-12 75.5 256 49.6
ECA247G3737 Erigeron canadensis HOM05D003799 ORTHO05D001964 2.3e-10 70.5 144 45.8
arahy.Tifrunner.gnm1.ann1.49FMRE Arachis hypogaea HOM05D004060 ORTHO05D004967 4.3e-09 66.2 229 39.3
Os07g0208600 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 5.7e-09 65.9 271 48.0
arahy.Tifrunner.gnm1.ann1.N3K66E Arachis hypogaea HOM05D003004 ORTHO05D004967 2.2e-08 63.9 39 79.5
unitig_8.g4575 Utricularia gibba HOM05D004060 ORTHO05D004967 2.2e-08 63.9 248 51.2
HanXRQChr10g0300061 Helianthus annuus HOM05D004060 ORTHO05D004967 6.3e-08 62.4 248 33.9
Hund24724 Selenicereus undatus HOM05D004060 ORTHO05D004967 2.4e-07 60.5 259 42.1
Oeu056892.1 Olea europaea HOM05D004060 ORTHO05D004967 4.1e-07 59.7 73 56.2
ECA236G0930 Erigeron canadensis HOM05D004060 ORTHO05D001964 5.3e-07 59.3 179 62.6
AUR62026012 Chenopodium quinoa HOM05D004060 ORTHO05D004967 9.0e-07 58.5 71 54.9
arahy.Tifrunner.gnm1.ann1.3TR3AL Arachis hypogaea HOM05D002100 ORTHO05D002310 7.7e-06 55.5 39 69.2
AUR62024421 Chenopodium quinoa HOM05D004060 ORTHO05D004967 7.7e-06 55.5 98 45.9


User provided reference genes

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