Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0007231 Helianthus annuus HOM05D004954 ORTHO05D006267 0.0e+00 1197.6 618 100.0
ECA248G3210 Erigeron canadensis HOM05D004954 ORTHO05D006267 0.0e+00 1101.3 619 92.1
CSS0025127 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 6.2e-306 1053.5 619 87.1
Lj1C100T5 Lonicera japonica HOM05D004954 ORTHO05D006267 1.6e-301 1038.9 616 86.9
Dinv10429 Davidia involucrata HOM05D004954 ORTHO05D006267 6.0e-301 1036.9 618 85.9
Duzib211G0600 Durio zibethinus HOM05D004954 ORTHO05D006267 7.9e-301 1036.6 619 85.6
Rhsim13G0052400 Rhododendron simsii HOM05D004954 ORTHO05D006267 5.1e-300 1033.9 642 83.0
Thecc.01G211600 Theobroma cacao HOM05D004954 ORTHO05D006267 8.7e-300 1033.1 619 85.9
Cc01_g16190 Coffea canephora HOM05D004954 ORTHO05D006267 1.1e-297 1026.2 617 84.3
Prupe.8G191000 Prunus persica HOM05D004954 ORTHO05D006267 1.1e-297 1026.2 619 84.7
CiPaw.13G054900 Carya illinoinensis HOM05D004954 ORTHO05D006267 3.1e-297 1024.6 619 84.7
PGR044G2625 Punica granatum HOM05D004954 ORTHO05D006267 3.1e-297 1024.6 616 84.1
MD10G1152500 Malus domestica HOM05D004954 ORTHO05D006267 6.9e-297 1023.5 618 84.1
QL09p046153 Quercus lobata HOM05D004954 ORTHO05D006267 1.5e-296 1022.3 618 84.5
Gorai.N003600 Gossypium raimondii HOM05D004954 ORTHO05D006267 3.4e-296 1021.1 619 84.2
Gohir.D07G166900 Gossypium hirsutum HOM05D004954 ORTHO05D006267 7.6e-296 1020.0 619 84.0
TWI18G0293 Tripterygium wilfordii HOM05D004954 ORTHO05D006267 1.3e-295 1019.2 619 83.7
Sed0007567 Sechium edule HOM05D004954 ORTHO05D006267 1.7e-295 1018.8 618 84.1
CsaV3_7G026900 Cucumis sativus L. HOM05D004954 ORTHO05D006267 2.2e-295 1018.5 616 83.8
Actinidia34548 Actinidia chinensis HOM05D004954 ORTHO05D006267 2.9e-295 1018.1 618 83.5
MELO3C012723.2 Cucumis melo HOM05D004954 ORTHO05D006267 2.9e-295 1018.1 618 83.7
CANSAT01G1324 Cannabis sativa HOM05D004954 ORTHO05D006267 5.0e-295 1017.3 619 83.7
Eucgr.H00730 Eucalyptus grandis HOM05D004954 ORTHO05D006267 1.4e-294 1015.8 618 83.3
DCAR_012691 Daucus carota HOM05D004954 ORTHO05D006267 4.2e-294 1014.2 622 83.9
Dinv28815 Davidia involucrata HOM05D004954 ORTHO05D006267 9.3e-294 1013.1 619 84.0
RcHm_v2.0_Chr6g0282881 Rosa chinensis HOM05D004954 ORTHO05D006267 9.3e-294 1013.1 618 83.2
Gohir.A07G159500 Gossypium hirsutum HOM05D004954 ORTHO05D006267 1.2e-293 1012.7 619 83.5
Atru.chr5.2285 Acer truncatum HOM05D004954 ORTHO05D006267 1.6e-293 1012.3 619 84.0
FAN27G0710 Fragaria x ananassa HOM05D004954 ORTHO05D006267 3.9e-292 1007.7 629 81.9
FAN24G2804 Fragaria x ananassa HOM05D004954 ORTHO05D006267 5.1e-292 1007.3 625 82.1
Actinidia23789 Actinidia chinensis HOM05D004954 ORTHO05D006267 1.1e-291 1006.1 657 79.9
SalBow6G4493 Salvia bowleyana HOM05D004954 ORTHO05D006267 1.9e-291 1005.4 618 82.8
CSS0003762 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 4.8e-290 1000.7 619 83.7
ClCG09G008140 Citrullus lanatus HOM05D004954 ORTHO05D006267 2.4e-289 998.4 618 83.0
Ciclev10004559m.g Citrus clementina HOM05D004954 ORTHO05D006267 2.4e-289 998.4 619 82.7
THA.LOC104818994 Tarenaya hassleriana HOM05D004954 ORTHO05D006267 9.1e-289 996.5 619 82.4
Potri.014G191100 Populus trichocarpa HOM05D004954 ORTHO05D006267 7.7e-288 993.4 618 82.2
MSTRG.21308 Avicennia marina HOM05D004954 ORTHO05D006267 1.3e-287 992.6 619 82.1
vmacro21304 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 3.6e-285 984.6 753 71.2
Phvul.003G003500 Phaseolus vulgaris HOM05D004954 ORTHO05D006267 3.0e-284 981.5 619 81.6
Lalb_Chr19g0124251 Lupinus albus HOM05D004954 ORTHO05D006267 5.1e-284 980.7 618 81.4
VMungo0251G2039 Vigna mungo HOM05D004954 ORTHO05D006267 1.1e-283 979.5 619 81.4
Oeu003633.1 Olea europaea HOM05D004954 ORTHO05D006267 3.1e-281 971.5 618 79.8
Nn8g39913 Nelumbo nucifera HOM05D004954 ORTHO05D006267 5.3e-281 970.7 616 79.9
PSO170G3087 Papaver somniferum HOM05D004954 ORTHO05D006267 5.3e-281 970.7 613 80.1
PSO063G7187 Papaver somniferum HOM05D004954 ORTHO05D006267 9.1e-281 969.9 613 79.9
Haze_25215 Corylus avellana HOM05D004954 ORTHO05D006267 1.5e-280 969.1 686 75.2
Lj2g0006494 Lotus japonicus HOM05D004954 ORTHO05D006267 8.5e-279 963.4 618 80.3
A06p39130 Brassica napus HOM05D004954 ORTHO05D006267 1.9e-278 962.2 618 79.1
Glyma.17G145700 Glycine max HOM05D004954 ORTHO05D006267 1.2e-277 959.5 620 79.7
Hund09467 Selenicereus undatus HOM05D004954 ORTHO05D006267 1.2e-277 959.5 611 79.4
BolC7t44441H Brassica oleracea HOM05D004954 ORTHO05D006267 2.1e-277 958.7 618 78.8
TPR.G29775 Trifolium pratense HOM05D004954 ORTHO05D006267 2.1e-277 958.7 624 79.6
AT5G48520 Arabidopsis thaliana HOM05D004954 ORTHO05D006267 3.6e-277 958.0 617 78.6
arahy.Tifrunner.gnm1.ann1.4YG7MF Arachis hypogaea HOM05D004954 ORTHO05D006267 7.9e-277 956.8 619 79.2
arahy.Tifrunner.gnm1.ann1.E22JQ7 Arachis hypogaea HOM05D004954 ORTHO05D006267 7.9e-277 956.8 619 79.2
C07p39210 Brassica napus HOM05D004954 ORTHO05D006267 1.0e-276 956.4 618 78.8
Thhalv10003836m.g Eutrema salsugineum HOM05D004954 ORTHO05D006267 6.7e-276 953.7 617 78.3
CAN.G874.27 Capsicum annuum HOM05D004954 ORTHO05D006267 1.1e-275 953.0 618 77.8
DCAR_018627 Daucus carota HOM05D004954 ORTHO05D006267 1.5e-275 952.6 619 78.8
Ah.11g051040 Amaranthus hybridus HOM05D004954 ORTHO05D006267 2.6e-275 951.8 645 76.0
Aqoxy7G02924 Aquilegia oxysepala HOM05D004954 ORTHO05D006267 4.4e-275 951.0 615 79.8
EL10Ac5g10627 Beta vulgaris HOM05D004954 ORTHO05D006267 7.4e-275 950.3 610 78.2
MBI18_g30537_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 8.2e-274 946.8 629 76.6
unitig_37.g12142 Utricularia gibba HOM05D004954 ORTHO05D006267 8.2e-274 946.8 618 78.3
Carub.0008s0810 Capsella rubella HOM05D004954 ORTHO05D006267 1.4e-273 946.0 617 77.8
Sp2g18880 Schrenkiella parvula HOM05D004954 ORTHO05D006267 3.1e-273 944.9 617 77.6
Sopen06g034480 Solanum pennellii HOM05D004954 ORTHO05D006267 1.6e-272 942.6 616 77.3
BraA06t26827Z Brassica rapa HOM05D004954 ORTHO05D006267 2.0e-272 942.2 651 75.1
Medtr1g038570 Medicago truncatula HOM05D004954 ORTHO05D006267 2.6e-272 941.8 623 78.0
Solyc06g083090.4 Solanum lycopersicum HOM05D004954 ORTHO05D006267 5.9e-272 940.6 616 76.9
Migut.D00727 Erythranthe guttata HOM05D004954 ORTHO05D006267 2.9e-271 938.3 616 78.2
BcaC06g30786 Brassica carinata HOM05D004954 ORTHO05D006267 5.2e-268 927.5 618 77.0
ATR0824G007 Amborella trichopoda HOM05D004954 ORTHO05D006267 8.2e-266 920.2 616 75.2
SGA_v2.0_scaffold29G12103 Striga asiatica HOM05D004954 ORTHO05D006267 7.0e-265 917.1 575 81.0
Nitab4.5_0011983g0020 Nicotiana tabacum HOM05D004954 ORTHO05D006267 5.0e-263 911.0 615 75.8
Manes.13G054100 Manihot esculenta HOM05D004954 ORTHO05D006267 1.5e-262 909.4 542 84.7
Peaxi162Scf01242g00120 Petunia axillaris HOM05D004954 ORTHO05D006267 2.1e-261 905.6 618 74.8
Nitab4.5_0002463g0060 Nicotiana tabacum HOM05D004954 ORTHO05D006267 8.0e-261 903.7 617 75.0
Sopen06g034490 Solanum pennellii HOM05D004954 ORTHO05D006267 5.4e-257 891.0 601 75.4
AUR62008123 Chenopodium quinoa HOM05D004954 ORTHO05D006267 5.9e-256 887.5 634 73.8
Aa31sc420G20 Aethionema arabicum HOM05D004954 ORTHO05D006267 1.7e-255 885.9 584 77.9
Solyc06g083100.2 Solanum lycopersicum HOM05D004954 ORTHO05D006267 1.1e-254 883.2 603 74.8
TAR375G0531 Trochodendron aralioides HOM05D004954 ORTHO05D006267 6.1e-253 877.5 640 72.0
AUR62028702 Chenopodium quinoa HOM05D004954 ORTHO05D006267 1.4e-252 876.3 618 73.9
HPP92_017515 Vanilla planifolia HOM05D004954 ORTHO05D006267 5.2e-252 874.4 616 71.4
Cfa002884 Carpinus fangiana HOM05D004954 ORTHO05D006267 3.3e-246 855.1 518 83.0
FvH4_2g17860 Fragaria vesca HOM05D004954 ORTHO05D006267 3.3e-246 855.1 517 82.4
Ca_12404_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 1.4e-244 849.7 624 72.9
CDE04G1241 Ceratophyllum demersum HOM05D004954 ORTHO05D006267 8.3e-242 840.5 616 70.9
Lsat_1_v5_gn_5_178381 Lactuca sativa HOM05D004954 ORTHO05D006267 5.4e-241 837.8 568 81.2
Psat6g025280 Pisum sativum HOM05D004954 ORTHO05D006267 5.4e-241 837.8 576 76.4
Os06g0186500 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 1.6e-240 836.3 617 68.4
Sabra14G0144200 Salix brachista HOM05D004954 ORTHO05D006267 1.1e-233 813.5 514 82.1
Sc17g0001680 Simmondsia chinensis HOM05D004954 ORTHO05D006267 5.2e-220 768.1 469 82.3
Pp3c20_5680 Physcomitrium patens HOM05D004954 ORTHO05D006267 6.8e-220 767.7 616 61.9
Atru.chr12.963 Acer truncatum HOM05D004954 ORTHO05D006267 2.8e-213 745.7 447 85.2
FAN15G2379 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.4e-212 743.4 558 70.4
SMO367G0402 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 4.4e-211 738.4 622 60.0
Mapoly0098s0023 Marchantia polymorpha HOM05D004954 ORTHO05D006267 2.2e-202 709.5 617 58.3
AagrBONN_evm.TU.Sc2ySwM_344.252 Anthoceros agrestis HOM05D004954 ORTHO05D006267 4.8e-189 665.2 649 52.9
Cpa.g.sc8.76 Carica papaya HOM05D004954 ORTHO05D006267 1.8e-167 593.6 362 85.6
Os07g0185700 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 5.0e-162 575.5 617 49.9
COL.COLO4_03294 Corchorus olitorius HOM05D004954 ORTHO05D006267 1.2e-160 570.9 342 86.8
GSVIVG01006234001 Vitis vinifera HOM05D004954 ORTHO05D006267 2.2e-157 560.1 489 67.1
CARHR183510 Cardamine hirsuta HOM05D004954 ORTHO05D006267 1.1e-156 557.8 360 81.1
Zm00001eb301770 Zea mays HOM05D004954 ORTHO05D006267 7.7e-155 551.6 617 47.2
arahy.Tifrunner.gnm1.ann1.R4R8P3 Arachis hypogaea HOM05D004954 ORTHO05D006267 1.2e-147 527.7 392 71.4
Zm00001eb278340 Zea mays HOM05D004954 ORTHO05D006267 5.4e-140 502.3 365 69.0
CBR_g32699 Chara braunii HOM05D004954 ORTHO05D006267 2.9e-125 453.4 510 46.1
SMO302G0009 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 2.0e-123 447.2 599 45.7
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 4.1e-116 422.9 375 63.7
vmacro21300 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 1.6e-115 421.0 282 80.1
MD05G1161600 Malus domestica HOM05D004954 ORTHO05D006267 3.3e-97 360.1 459 50.8
GSVIVG01002254001 Vitis vinifera HOM05D004954 ORTHO05D006267 4.2e-76 290.0 175 82.3
COL.COLO4_03295 Corchorus olitorius HOM05D004954 ORTHO05D006267 1.1e-73 282.0 171 82.5
SEGI_36119 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 4.2e-68 263.5 201 64.2
FAN15G2003 Fragaria x ananassa HOM05D004954 ORTHO05D006267 3.8e-61 240.4 149 84.6
Sc17g0001690 Simmondsia chinensis HOM05D004954 ORTHO05D006267 3.2e-60 237.3 144 85.4
FAN15G2507 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.7e-56 224.9 134 83.6
Cpa.g.sc8.77 Carica papaya HOM05D004954 ORTHO05D006267 9.4e-52 209.1 117 84.6
Atru.chr12.964 Acer truncatum HOM05D004954 ORTHO05D006267 1.1e-49 202.2 151 68.9
MD05G1161700 Malus domestica HOM05D004954 ORTHO05D006267 5.7e-49 199.9 122 81.1
SEGI_30399 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 1.1e-47 195.7 135 72.6
MBI18_g37244_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 1.5e-44 185.3 105 80.0
Sabra14G0144300 Salix brachista HOM05D004954 ORTHO05D006267 3.9e-42 177.2 106 78.3
VMungo0647G2582 Vigna mungo HOM05D004954 ORTHO05D006267 1.5e-41 175.3 105 87.6
Ca_12408_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 1.1e-39 169.1 178 53.9
VMungo0647G1109 Vigna mungo HOM05D004954 ORTHO05D006267 1.3e-29 135.6 100 73.0
MD05G1160200 Malus domestica HOM05D004954 ORTHO05D006267 3.6e-27 127.5 86 80.2
CBR_g49514 Chara braunii HOM05D000019 ORTHO05D001702 8.0e-27 126.3 107 56.1
Ca_12409_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 6.8e-26 123.2 74 86.5
SEGI_32998 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 2.7e-22 111.3 86 72.1
PGSC0003DMG400008807 Solanum tuberosum HOM05D004954 ORTHO05D006267 1.0e-21 109.4 59 78.0
PGSC0003DMG400020114 Solanum tuberosum HOM05D004954 ORTHO05D006267 1.0e-21 109.4 59 78.0
MD05G1162200 Malus domestica HOM05D004954 ORTHO05D006267 1.3e-21 109.0 57 86.0
Ciclev10018232m.g Citrus clementina HOM05D004954 ORTHO05D006267 5.5e-20 103.6 76 69.7
QL09p053445 Quercus lobata HOM05D004954 ORTHO05D030058 1.6e-19 102.1 117 57.3
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 2.8e-19 101.3 104 48.1
VMungo0464G0043 Vigna mungo HOM05D004954 ORTHO05D006267 4.7e-19 100.5 59 74.6
Glyma.09G284100 Glycine max HOM05D004954 ORTHO05D006267 1.7e-16 92.0 50 82.0
Cfa002883 Carpinus fangiana HOM05D020463 ORTHO05D022255 2.9e-16 91.3 54 81.5
Hma1.2p1_0066F.1_g035760 Hydrangea macrophylla HOM05D004954 ORTHO05D006267 3.2e-15 87.8 56 67.9
MD05G1162500 Malus domestica HOM05D004954 ORTHO05D006267 6.1e-11 73.6 80 48.8
TAR375G0464 Trochodendron aralioides HOM05D004954 ORTHO05D006267 6.1e-11 73.6 42 78.6
Medtr3g114845 Medicago truncatula HOM05D004954 ORTHO05D006267 1.8e-10 72.0 44 63.6
CSS0000571 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D014145 8.9e-10 69.7 48 77.1
SEGI_31941 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 1.7e-08 65.5 38 76.3
QL09p053081 Quercus lobata HOM05D002786 ORTHO05D030058 4.6e-06 57.4 43 72.1


User provided reference genes

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