Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0006841 Helianthus annuus HOM05D006249 ORTHO05D007643 1.4e-176 622.9 314 100.0
Lsat_1_v5_gn_5_186740 Lactuca sativa HOM05D006249 ORTHO05D007643 6.7e-147 524.2 314 82.5
ECA248G0032 Erigeron canadensis HOM05D006249 ORTHO05D007643 1.0e-139 500.4 322 79.5
Sopen09g027650 Solanum pennellii HOM05D006249 ORTHO05D007643 8.3e-113 411.0 314 64.0
Solyc09g065860.3 Solanum lycopersicum HOM05D006249 ORTHO05D007643 1.4e-112 410.2 314 64.0
Peaxi162Scf00049g00209 Petunia axillaris HOM05D006249 ORTHO05D007643 3.1e-112 409.1 281 68.3
CSS0046504 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 7.0e-112 407.9 319 63.9
Ciclev10021257m.g Citrus clementina HOM05D006249 ORTHO05D007643 1.7e-110 403.3 316 61.1
CAN.G1259.4 Capsicum annuum HOM05D006249 ORTHO05D007643 8.5e-110 401.0 313 62.9
COL.COLO4_06075 Corchorus olitorius HOM05D006249 ORTHO05D007643 1.5e-109 400.2 314 61.8
GSVIVG01000723001 Vitis vinifera HOM05D006249 ORTHO05D007643 2.5e-109 399.4 315 63.8
RcHm_v2.0_Chr6g0289561 Rosa chinensis HOM05D006249 ORTHO05D007643 4.2e-109 398.7 314 62.4
Dinv34569 Davidia involucrata HOM05D006249 ORTHO05D007643 2.7e-108 396.0 314 65.3
Thecc.01G267400 Theobroma cacao HOM05D006249 ORTHO05D007643 8.0e-108 394.4 314 60.8
Cpa.g.sc52.92 Carica papaya HOM05D006249 ORTHO05D007643 2.3e-107 392.9 311 62.4
CiPaw.03G257400 Carya illinoinensis HOM05D006249 ORTHO05D007643 2.3e-107 392.9 263 70.0
Lj2C1159G1 Lonicera japonica HOM05D006249 ORTHO05D007643 3.0e-107 392.5 314 61.8
Nitab4.5_0001556g0120 Nicotiana tabacum HOM05D006249 ORTHO05D007643 8.8e-107 391.0 281 67.3
Potri.005G218700 Populus trichocarpa HOM05D006249 ORTHO05D007643 1.2e-106 390.6 314 59.6
Sc17g0000990 Simmondsia chinensis HOM05D006249 ORTHO05D007643 3.4e-106 389.0 253 70.0
Gohir.A11G127400 Gossypium hirsutum HOM05D006249 ORTHO05D007643 4.4e-106 388.7 311 60.5
Manes.05G084500 Manihot esculenta HOM05D006249 ORTHO05D007643 9.8e-106 387.5 314 60.2
Cc01_g18850 Coffea canephora HOM05D006249 ORTHO05D007643 1.3e-105 387.1 316 59.8
Rhsim01G0269700 Rhododendron simsii HOM05D006249 ORTHO05D007643 1.3e-105 387.1 326 59.5
FvH4_2g22511 Fragaria vesca HOM05D006249 ORTHO05D007643 2.8e-105 386.0 314 61.5
Duzib138G0419 Durio zibethinus HOM05D006249 ORTHO05D007643 3.7e-105 385.6 270 66.3
Gorai.007G142000 Gossypium raimondii HOM05D006249 ORTHO05D007643 3.7e-105 385.6 311 60.1
Gohir.D11G132800 Gossypium hirsutum HOM05D006249 ORTHO05D007643 6.3e-105 384.8 311 59.8
ClCG01G001850 Citrullus lanatus HOM05D006249 ORTHO05D007643 1.4e-104 383.6 279 65.6
CsaV3_5G002000 Cucumis sativus L. HOM05D006249 ORTHO05D007643 1.4e-104 383.6 279 66.3
vmacro14872 Vaccinium macrocarpon HOM05D006249 ORTHO05D007643 1.8e-104 383.3 273 66.7
MELO3C005753.2 Cucumis melo HOM05D006249 ORTHO05D007643 4.1e-104 382.1 279 65.9
CSS0032391 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 5.4e-104 381.7 300 63.3
PGSC0003DMG400019301 Solanum tuberosum HOM05D006249 ORTHO05D007643 3.5e-103 379.0 262 68.7
Eucgr.K03312 Eucalyptus grandis HOM05D006249 ORTHO05D007643 1.3e-102 377.1 284 63.4
PGR044G2488 Punica granatum HOM05D006249 ORTHO05D007643 1.3e-102 377.1 316 60.1
BraA10t42442Z Brassica rapa HOM05D006249 ORTHO05D007643 2.3e-102 376.3 315 58.7
Carub.0001s0216 Capsella rubella HOM05D006249 ORTHO05D007643 2.9e-102 375.9 318 58.8
Migut.D00374 Erythranthe guttata HOM05D006249 ORTHO05D007643 2.9e-102 375.9 311 59.8
QL12p042687 Quercus lobata HOM05D006249 ORTHO05D007643 5.0e-102 375.2 301 61.1
Aa31LG1G9510 Aethionema arabicum HOM05D006249 ORTHO05D007643 6.6e-102 374.8 314 58.9
A10p01650 Brassica napus HOM05D006249 ORTHO05D007643 1.1e-101 374.0 315 58.4
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 3.3e-101 372.5 254 67.7
AT1G03030 Arabidopsis thaliana HOM05D006249 ORTHO05D007643 5.6e-101 371.7 314 58.3
Haze_24532 Corylus avellana HOM05D006249 ORTHO05D007643 7.2e-101 371.3 252 69.0
AUR62011941 Chenopodium quinoa HOM05D006249 ORTHO05D007643 1.6e-100 370.2 313 60.1
TAR362G0606 Trochodendron aralioides HOM05D006249 ORTHO05D007643 2.8e-100 369.4 315 60.3
Atru.chr5.1566 Acer truncatum HOM05D006249 ORTHO05D007643 3.6e-100 369.0 234 72.2
Atru.chr5.1568 Acer truncatum HOM05D006249 ORTHO05D007643 3.6e-100 369.0 234 72.2
BcaC07g42289 Brassica carinata HOM05D006249 ORTHO05D007643 3.6e-100 369.0 315 58.1
BolC5t28944H Brassica oleracea HOM05D006249 ORTHO05D007643 3.6e-100 369.0 315 58.1
C05p01650 Brassica napus HOM05D006249 ORTHO05D007643 4.7e-100 368.6 324 57.1
CANSAT01G0091 Cannabis sativa HOM05D006249 ORTHO05D007643 4.7e-100 368.6 247 69.2
Nitab4.5_0000187g0200 Nicotiana tabacum HOM05D006249 ORTHO05D007643 6.1e-100 368.2 231 74.0
SalBow4G2323 Salvia bowleyana HOM05D006249 ORTHO05D007643 6.1e-100 368.2 313 58.8
MD05G1205700 Malus domestica HOM05D006249 ORTHO05D007643 1.0e-99 367.5 317 60.3
CARHR002370 Cardamine hirsuta HOM05D006249 ORTHO05D007643 3.0e-99 365.9 318 57.5
Prupe.8G232100 Prunus persica HOM05D006249 ORTHO05D007643 2.6e-98 362.8 312 59.3
Thhalv10008317m.g Eutrema salsugineum HOM05D006249 ORTHO05D007643 5.7e-98 361.7 317 57.1
Hund09572 Selenicereus undatus HOM05D006249 ORTHO05D007643 7.5e-98 361.3 288 61.8
Oeu018173.1 Olea europaea HOM05D006249 ORTHO05D007643 1.3e-97 360.5 312 60.3
Aqoxy2G03531 Aquilegia oxysepala HOM05D006249 ORTHO05D007643 2.9e-97 359.4 306 60.5
Medtr7g096100 Medicago truncatula HOM05D006249 ORTHO05D007643 2.9e-97 359.4 276 61.2
AL1G12480 Arabidopsis lyrata HOM05D006249 ORTHO05D007643 1.1e-96 357.5 234 70.1
MBI04_g06851_MAGBIO Magnolia biondii HOM05D006249 ORTHO05D007643 1.8e-96 356.7 308 58.4
Lj1g0022179 Lotus japonicus HOM05D006249 ORTHO05D007643 2.4e-96 356.3 271 62.7
TPR.G5717 Trifolium pratense HOM05D006249 ORTHO05D007643 3.2e-96 355.9 268 61.6
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 9.2e-96 354.4 273 64.8
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 9.2e-96 354.4 273 64.8
Nn1g02571 Nelumbo nucifera HOM05D006249 ORTHO05D007643 9.2e-96 354.4 314 58.6
THA.LOC104801257 Tarenaya hassleriana HOM05D006249 ORTHO05D007643 2.0e-95 353.2 315 56.8
Glyma.19G161200 Glycine max HOM05D006249 ORTHO05D007643 5.9e-95 351.7 271 60.9
Psat3g061040 Pisum sativum HOM05D006249 ORTHO05D007643 7.8e-95 351.3 260 62.3
ATR0665G572 Amborella trichopoda HOM05D006249 ORTHO05D007643 2.5e-93 346.3 262 63.0
CDE06G0138 Ceratophyllum demersum HOM05D006249 ORTHO05D007643 4.3e-93 345.5 260 64.6
MSTRG.21512 Avicennia marina HOM05D006249 ORTHO05D007643 5.6e-93 345.1 262 63.7
TWI18G0435 Tripterygium wilfordii HOM05D006249 ORTHO05D007643 2.3e-91 339.7 291 60.5
Lalb_Chr25g0290111 Lupinus albus HOM05D006249 ORTHO05D007643 4.0e-91 339.0 280 58.2
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 4.0e-91 339.0 245 63.7
arahy.Tifrunner.gnm1.ann1.EN4NAA Arachis hypogaea HOM05D006249 ORTHO05D007643 2.0e-90 336.7 251 63.3
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 9.8e-90 334.3 316 55.1
arahy.Tifrunner.gnm1.ann1.3ZGG11 Arachis hypogaea HOM05D006249 ORTHO05D007643 1.3e-89 334.0 251 62.5
PSO832G1981 Papaver somniferum HOM05D006249 ORTHO05D007643 3.7e-89 332.4 321 55.8
Sed0010412 Sechium edule HOM05D006249 ORTHO05D007643 1.1e-88 330.9 209 71.8
Zm00001eb135540 Zea mays HOM05D006249 ORTHO05D007643 2.4e-88 329.7 248 62.9
Os12g0601200 Oryza sativa ssp. japonica HOM05D006249 ORTHO05D007643 3.2e-88 329.3 272 58.1
PSO210G4763 Papaver somniferum HOM05D006249 ORTHO05D007643 1.6e-87 327.0 325 55.1
HPP92_012490 Vanilla planifolia HOM05D006249 ORTHO05D007643 5.6e-85 318.5 270 56.7
AUR62032256 Chenopodium quinoa HOM05D006249 ORTHO05D007643 8.9e-83 311.2 313 54.3
BcaC07g42286 Brassica carinata HOM05D006249 ORTHO05D007643 1.3e-81 307.4 250 58.4
Ah.02g111470 Amaranthus hybridus HOM05D006249 ORTHO05D007643 2.3e-78 296.6 288 54.5
Mapoly0096s0074 Marchantia polymorpha HOM05D006249 ORTHO05D007643 1.7e-73 280.4 250 56.4
unitig_0.g1129 Utricularia gibba HOM05D006249 ORTHO05D007643 2.3e-70 270.0 181 67.4
Actinidia21156 Actinidia chinensis HOM05D006249 ORTHO05D007643 1.1e-69 267.7 297 50.2
Pp3c17_16800 Physcomitrium patens HOM05D006249 ORTHO05D007643 1.1e-69 267.7 248 54.0
Phvul.001G156700 Phaseolus vulgaris HOM05D006249 ORTHO05D007643 8.1e-68 261.5 189 63.0
Medtr4g076080 Medicago truncatula HOM05D006249 ORTHO05D007643 1.4e-67 260.8 305 45.2
BcaC07g42292 Brassica carinata HOM05D006249 ORTHO05D007643 1.7e-65 253.8 339 44.8
EL10Ac5g10475 Beta vulgaris HOM05D006249 ORTHO05D007643 5.4e-64 248.8 150 73.3
SEGI_12640 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 6.0e-63 245.4 172 62.2
RcHm_v2.0_Chr4g0397901 Rosa chinensis HOM05D006249 ORTHO05D007643 7.3e-61 238.4 176 66.5
AagrBONN_evm.TU.Sc2ySwM_228.3891 Anthoceros agrestis HOM05D006249 ORTHO05D007643 4.0e-59 232.6 212 55.7
SMO358G0282 Selaginella moellendorffii HOM05D000331 ORTHO05D002018 9.6e-53 211.5 173 57.2
Cre02.g101000 Chlamydomonas reinhardtii HOM05D006249 ORTHO05D007643 4.6e-47 192.6 264 41.7
MCO14G208 Micromonas commoda HOM05D006249 ORTHO05D007643 5.6e-45 185.7 244 46.7
Oeu018171.1 Olea europaea HOM05D006249 ORTHO05D007643 3.0e-38 163.3 170 55.3
arahy.Tifrunner.gnm1.ann1.U7WVQR Arachis hypogaea HOM05D006249 ORTHO05D007643 1.1e-37 161.4 198 41.9
Sp1g02020 Schrenkiella parvula HOM05D006249 ORTHO05D007643 2.5e-37 160.2 194 47.4
CBR_g19145 Chara braunii HOM05D006249 ORTHO05D007643 4.3e-37 159.5 213 44.1
Ca_15970_v3 Cicer arietinum L. HOM05D006249 ORTHO05D007643 1.8e-30 137.5 130 49.2
Hund30725 Selenicereus undatus HOM05D006249 ORTHO05D007643 1.9e-29 134.0 99 63.6
Cfa022768 Carpinus fangiana HOM05D006249 ORTHO05D007643 2.2e-28 130.6 150 44.7
Hund30696 Selenicereus undatus HOM05D006249 ORTHO05D007643 1.5e-26 124.4 98 60.2
Medtr8g064430 Medicago truncatula HOM05D006249 ORTHO05D007643 1.0e-25 121.7 94 60.6
Glyma.03G158766 Glycine max HOM05D006249 ORTHO05D007643 3.8e-25 119.8 96 62.5
arahy.Tifrunner.gnm1.ann1.FBQK8B Arachis hypogaea HOM05D006249 ORTHO05D007643 1.9e-24 117.5 119 50.4
arahy.Tifrunner.gnm1.ann1.AHQ53Z Arachis hypogaea HOM05D006249 ORTHO05D007643 2.5e-24 117.1 119 50.4
PRCOL_00003971 Prasinoderma coloniale HOM05D006249 ORTHO05D007643 1.8e-22 110.9 181 38.1
Glyma.03G158832 Glycine max HOM05D006249 ORTHO05D007643 5.1e-22 109.4 63 74.6
SHI29847 Sapria himalayana HOM05D006249 ORTHO05D007643 1.2e-18 98.2 136 41.2
SHI34902 Sapria himalayana HOM05D006249 ORTHO05D007643 1.1e-16 91.7 138 38.4
CSS0005124 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 4.4e-13 79.7 58 63.8
SHI29011 Sapria himalayana HOM05D006249 ORTHO05D007643 6.3e-12 75.9 203 28.6
ECA246G0314 Erigeron canadensis HOM05D001287 ORTHO05D001226 2.9e-09 67.0 215 28.4
SHI16544 Sapria himalayana HOM05D006249 ORTHO05D007643 2.9e-09 67.0 116 34.5
SHI36882 Sapria himalayana HOM05D006249 ORTHO05D007643 1.5e-08 64.7 117 34.2
SHI04506 Sapria himalayana HOM05D006249 ORTHO05D007643 2.5e-08 63.9 119 32.8
SHI34501 Sapria himalayana HOM05D006249 ORTHO05D007643 5.5e-08 62.8 92 41.3
Lsat_1_v5_gn_0_18220 Lactuca sativa HOM05D001287 ORTHO05D001226 8.0e-07 58.9 245 24.9
Cfa018838 Carpinus fangiana HOM05D001287 ORTHO05D001226 1.8e-06 57.8 216 25.9
HanXRQChr17g0548671 Helianthus annuus HOM05D001287 ORTHO05D001226 2.3e-06 57.4 129 31.8
SHI31647 Sapria himalayana HOM05D006249 ORTHO05D007643 2.3e-06 57.4 53 49.1
SHI36883 Sapria himalayana HOM05D006249 ORTHO05D007643 2.3e-06 57.4 68 42.6
Pp3s92_20 Physcomitrium patens HOM05D001287 ORTHO05D001226 3.0e-06 57.0 202 23.8
SHI49503 Sapria himalayana HOM05D000624 ORTHO05D000495 6.7e-06 55.8 50 56.0


User provided reference genes

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