Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0006811 Helianthus annuus HOM05D005155 ORTHO05D006266 7.9e-143 510.8 325 100.0
Lsat_1_v5_gn_0_13881 Lactuca sativa HOM05D005155 ORTHO05D006266 4.9e-92 342.0 326 70.2
ECA248G0062 Erigeron canadensis HOM05D005155 ORTHO05D006266 1.6e-87 327.0 373 65.1
CSS0035525 Camellia sinensis var. sinensis HOM05D005155 ORTHO05D006266 7.1e-75 285.0 332 54.2
Dinv21322 Davidia involucrata HOM05D005155 ORTHO05D006266 9.2e-75 284.6 330 54.5
Actinidia20603 Actinidia chinensis HOM05D005155 ORTHO05D006266 1.2e-74 284.3 335 54.6
Rhsim04G0007200 Rhododendron simsii HOM05D005155 ORTHO05D006266 6.0e-74 282.0 333 57.1
Actinidia20617 Actinidia chinensis HOM05D005155 ORTHO05D006266 1.9e-72 276.9 313 55.3
Hma1.2p1_0629F.1_g192150 Hydrangea macrophylla HOM05D005155 ORTHO05D006266 1.2e-71 274.2 341 52.5
PGR044G0745 Punica granatum HOM05D005155 ORTHO05D006266 3.6e-71 272.7 328 51.5
Ciclev10015959m.g Citrus clementina HOM05D005155 ORTHO05D006266 1.1e-70 271.2 329 52.3
Cpa.g.sc136.55 Carica papaya HOM05D005155 ORTHO05D006266 6.9e-70 268.5 329 51.7
Atru.chr6.3431 Acer truncatum HOM05D005155 ORTHO05D006266 1.2e-69 267.7 331 51.1
Dinv05324 Davidia involucrata HOM05D005155 ORTHO05D006266 1.2e-69 267.7 306 54.2
Eucgr.K01388 Eucalyptus grandis HOM05D005155 ORTHO05D006266 2.0e-69 266.9 330 55.8
Manes.13G059900 Manihot esculenta HOM05D005155 ORTHO05D006266 1.3e-68 264.2 335 51.6
Oeu022053.1 Olea europaea HOM05D005155 ORTHO05D006266 8.4e-68 261.5 334 54.5
Potri.014G170500 Populus trichocarpa HOM05D005155 ORTHO05D006266 8.4e-68 261.5 327 52.0
Nitab4.5_0004941g0060 Nicotiana tabacum HOM05D005155 ORTHO05D006266 1.1e-67 261.2 339 52.5
Prupe.3G194600 Prunus persica HOM05D005155 ORTHO05D006266 9.3e-67 258.1 332 50.3
MELO3C024180.2 Cucumis melo HOM05D005155 ORTHO05D006266 3.5e-66 256.1 321 51.7
Sed0007088 Sechium edule HOM05D005155 ORTHO05D006266 4.6e-66 255.8 323 51.1
Gorai.001G190100 Gossypium raimondii HOM05D005155 ORTHO05D006266 7.8e-66 255.0 329 50.8
CSS0023894 Camellia sinensis var. sinensis HOM05D005155 ORTHO05D006266 1.0e-65 254.6 332 51.5
TPR.G3861 Trifolium pratense HOM05D005155 ORTHO05D006266 1.3e-65 254.2 344 48.0
CsaV3_7G002370 Cucumis sativus L. HOM05D005155 ORTHO05D006266 1.7e-65 253.8 321 52.3
Gohir.D07G170200 Gossypium hirsutum HOM05D005155 ORTHO05D006266 1.7e-65 253.8 328 50.3
ClCG02G003040 Citrullus lanatus HOM05D005155 ORTHO05D006266 3.9e-65 252.7 319 52.7
Glyma.19G235800 Glycine max HOM05D005155 ORTHO05D006266 1.5e-64 250.8 343 50.1
Gohir.D11G154600 Gossypium hirsutum HOM05D005155 ORTHO05D006266 2.5e-64 250.0 322 53.4
Glyma.03G238300 Glycine max HOM05D005155 ORTHO05D006266 4.3e-64 249.2 341 48.7
PGSC0003DMG400004112 Solanum tuberosum HOM05D005155 ORTHO05D006266 5.6e-64 248.8 351 49.3
DCAR_021083 Daucus carota HOM05D005155 ORTHO05D006266 9.6e-64 248.1 327 54.7
Nitab4.5_0003086g0050 Nicotiana tabacum HOM05D005155 ORTHO05D006266 9.6e-64 248.1 336 52.4
Haze_24928 Corylus avellana HOM05D005155 ORTHO05D006266 1.3e-63 247.7 341 51.3
Actinidia24711 Actinidia chinensis HOM05D005155 ORTHO05D006266 1.6e-63 247.3 302 52.6
Gorai.007G164700 Gossypium raimondii HOM05D005155 ORTHO05D006266 2.1e-63 246.9 322 53.1
Gohir.A07G163100 Gossypium hirsutum HOM05D005155 ORTHO05D006266 3.6e-63 246.1 325 49.2
CAN.G1447.4 Capsicum annuum HOM05D005155 ORTHO05D006266 4.8e-63 245.7 351 56.7
CiPaw.04G197900 Carya illinoinensis HOM05D005155 ORTHO05D006266 4.8e-63 245.7 334 48.8
Psat7g043480 Pisum sativum HOM05D005155 ORTHO05D006266 4.8e-63 245.7 317 48.6
THA.LOC104819027 Tarenaya hassleriana HOM05D005155 ORTHO05D006266 6.2e-63 245.4 316 59.2
MD09G1131700 Malus domestica HOM05D005155 ORTHO05D006266 1.8e-62 243.8 329 57.1
THA.LOC104802634 Tarenaya hassleriana HOM05D005155 ORTHO05D006266 3.1e-62 243.0 308 51.3
Thecc.01G199500 Theobroma cacao HOM05D005155 ORTHO05D006266 3.1e-62 243.0 328 50.6
Lj4g0024217 Lotus japonicus HOM05D005155 ORTHO05D006266 9.0e-62 241.5 335 47.8
VMungo0540G1824 Vigna mungo HOM05D005155 ORTHO05D006266 1.2e-61 241.1 338 51.2
Phvul.006G092400 Phaseolus vulgaris HOM05D005155 ORTHO05D006266 1.5e-61 240.7 342 47.4
Sopen05g001730 Solanum pennellii HOM05D005155 ORTHO05D006266 1.5e-61 240.7 336 50.3
Duzib138G0133 Durio zibethinus HOM05D005155 ORTHO05D006266 1.3e-60 237.7 330 54.2
Solyc05g005730.4 Solanum lycopersicum HOM05D005155 ORTHO05D006266 1.7e-60 237.3 344 48.8
Aqoxy3G04181 Aquilegia oxysepala HOM05D005155 ORTHO05D006266 6.4e-60 235.3 332 53.9
Duzib211G0098 Durio zibethinus HOM05D005155 ORTHO05D006266 6.4e-60 235.3 316 57.0
Lalb_Chr21g0315451 Lupinus albus HOM05D005155 ORTHO05D006266 1.1e-59 234.6 331 52.0
TWI75G0909 Tripterygium wilfordii HOM05D005155 ORTHO05D006266 1.4e-59 234.2 329 46.2
Thhalv10004636m.g Eutrema salsugineum HOM05D005155 ORTHO05D006266 4.2e-59 232.6 320 47.8
Carub.0008s0781 Capsella rubella HOM05D005155 ORTHO05D006266 5.4e-59 232.3 318 48.7
Cc02_g33980 Coffea canephora HOM05D005155 ORTHO05D006266 7.1e-59 231.9 283 53.7
Aa31LG4G7530 Aethionema arabicum HOM05D005155 ORTHO05D006266 9.3e-59 231.5 317 50.2
Cfa014201 Carpinus fangiana HOM05D005155 ORTHO05D006266 1.2e-58 231.1 335 53.1
TAR629G2368 Trochodendron aralioides HOM05D005155 ORTHO05D006266 1.6e-58 230.7 340 45.6
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 6.0e-58 228.8 277 49.8
Sp2g18610 Schrenkiella parvula HOM05D005155 ORTHO05D006266 7.9e-58 228.4 326 47.9
AL8G20970 Arabidopsis lyrata HOM05D005155 ORTHO05D006266 1.8e-57 227.3 330 48.5
A09p04360 Brassica napus HOM05D005155 ORTHO05D006266 2.3e-57 226.9 331 48.0
C09p04670 Brassica napus HOM05D005155 ORTHO05D006266 3.0e-57 226.5 330 47.3
Ah.08g219720 Amaranthus hybridus HOM05D005155 ORTHO05D006266 1.5e-56 224.2 312 54.8
AT5G48240 Arabidopsis thaliana HOM05D005155 ORTHO05D006266 1.5e-56 224.2 332 47.9
Peaxi162Scf00359g00214 Petunia axillaris HOM05D005155 ORTHO05D006266 1.5e-56 224.2 330 49.7
CANSAT64G2107 Cannabis sativa HOM05D005155 ORTHO05D006266 2.5e-56 223.4 327 52.9
Ah.08g210400 Amaranthus hybridus HOM05D005155 ORTHO05D006266 5.6e-56 222.2 312 48.7
Migut.M00065 Erythranthe guttata HOM05D005155 ORTHO05D006266 9.6e-56 221.5 364 45.9
GSVIVG01030126001 Vitis vinifera HOM05D005155 ORTHO05D006266 1.3e-55 221.1 287 51.6
Haze_12586 Corylus avellana HOM05D005155 ORTHO05D006266 8.1e-55 218.4 204 61.3
FvH4_6g40390 Fragaria vesca HOM05D005155 ORTHO05D006266 1.4e-54 217.6 331 56.2
HPP92_009941 Vanilla planifolia HOM05D005155 ORTHO05D006266 1.8e-54 217.2 329 46.5
CAN.G715.5 Capsicum annuum HOM05D005155 ORTHO05D006266 3.1e-54 216.5 282 59.2
AUR62030994 Chenopodium quinoa HOM05D005155 ORTHO05D006266 3.1e-54 216.5 186 64.0
FAN09G4460 Fragaria x ananassa HOM05D005155 ORTHO05D006266 3.1e-54 216.5 341 48.1
RcHm_v2.0_Chr2g0155591 Rosa chinensis HOM05D005155 ORTHO05D006266 3.1e-54 216.5 333 56.8
TPR.G35685 Trifolium pratense HOM05D005155 ORTHO05D006266 3.1e-54 216.5 348 47.1
arahy.Tifrunner.gnm1.ann1.ZBS9GV Arachis hypogaea HOM05D005155 ORTHO05D006266 4.0e-54 216.1 330 45.8
SGA_v2.0_scaffold181G39700 Striga asiatica HOM05D005155 ORTHO05D006266 4.0e-54 216.1 393 43.0
A06p39310 Brassica napus HOM05D005155 ORTHO05D006266 6.9e-54 215.3 191 61.8
arahy.Tifrunner.gnm1.ann1.FV1RU3 Arachis hypogaea HOM05D005155 ORTHO05D006266 9.0e-54 214.9 330 45.5
CARHR286520 Cardamine hirsuta HOM05D005155 ORTHO05D006266 9.0e-54 214.9 319 50.8
BraA09t36073Z Brassica rapa HOM05D005155 ORTHO05D006266 1.2e-53 214.5 364 43.1
BolC9t53395H Brassica oleracea HOM05D005155 ORTHO05D006266 1.5e-53 214.2 360 43.6
Ca_02017_v3 Cicer arietinum L. HOM05D005155 ORTHO05D006266 2.0e-53 213.8 311 55.6
FAN05G3842 Fragaria x ananassa HOM05D005155 ORTHO05D006266 2.0e-53 213.8 332 54.8
Sc20g0004590 Simmondsia chinensis HOM05D005155 ORTHO05D006266 2.0e-53 213.8 340 45.9
SalBow7G0407 Salvia bowleyana HOM05D005155 ORTHO05D006266 3.4e-53 213.0 329 48.9
FAN02G4414 Fragaria x ananassa HOM05D005155 ORTHO05D006266 4.5e-53 212.6 332 52.1
MBI04_g26115_MAGBIO Magnolia biondii HOM05D005155 ORTHO05D006266 9.9e-53 211.5 331 47.4
C07p38970 Brassica napus HOM05D005155 ORTHO05D006266 1.7e-52 210.7 314 45.5
BcaC04g23785 Brassica carinata HOM05D005155 ORTHO05D006266 6.4e-52 208.8 332 44.9
COL.COLO4_19654 Corchorus olitorius HOM05D005155 ORTHO05D006266 6.4e-52 208.8 197 62.9
BcaB04g19566 Brassica carinata HOM05D005155 ORTHO05D006266 1.1e-51 208.0 315 46.3
CARHR218550 Cardamine hirsuta HOM05D005155 ORTHO05D006266 2.4e-51 206.8 278 51.8
EL10Ac5g10791 Beta vulgaris HOM05D005155 ORTHO05D006266 9.3e-51 204.9 302 48.7
PSO782G4695 Papaver somniferum HOM05D005155 ORTHO05D006266 1.0e-49 201.4 326 44.8
BcaC06g30816 Brassica carinata HOM05D005155 ORTHO05D006266 2.3e-49 200.3 192 58.9
PSO210G0096 Papaver somniferum HOM05D005155 ORTHO05D006266 3.0e-49 199.9 318 45.6
BraA06t26845Z Brassica rapa HOM05D005155 ORTHO05D006266 4.3e-48 196.1 230 51.3
FAN14G3535 Fragaria x ananassa HOM05D005155 ORTHO05D006266 2.1e-47 193.7 354 51.1
CDE09G0959 Ceratophyllum demersum HOM05D005155 ORTHO05D006266 1.3e-44 184.5 316 41.5
Lj1A800T38 Lonicera japonica HOM05D005155 ORTHO05D006266 8.4e-44 181.8 321 47.4
Gohir.A11G147700 Gossypium hirsutum HOM05D005155 ORTHO05D006266 9.3e-43 178.3 330 44.8
MSTRG.6620 Avicennia marina HOM05D005155 ORTHO05D006266 2.1e-42 177.2 227 51.1
Psat5g216800 Pisum sativum HOM05D005155 ORTHO05D006266 4.6e-42 176.0 260 45.0
SEGI_31719 Sequoiadendron giganteum HOM05D005155 ORTHO05D006266 1.1e-40 171.4 213 50.2
BolC7t44418H Brassica oleracea HOM05D005155 ORTHO05D006266 1.6e-39 167.5 136 67.6
Nn3g19477 Nelumbo nucifera HOM05D005155 ORTHO05D006266 1.6e-39 167.5 308 41.2
Zm00001eb298370 Zea mays HOM05D005155 ORTHO05D006266 2.8e-39 166.8 201 52.2
ATR0225G032 Amborella trichopoda HOM05D005155 ORTHO05D006266 3.7e-39 166.4 330 38.5
Nn1g02050 Nelumbo nucifera HOM05D005155 ORTHO05D006266 3.7e-39 166.4 329 40.7
Os11g0266000 Oryza sativa ssp. japonica HOM05D005155 ORTHO05D006266 3.7e-39 166.4 200 50.0
QL04p067008 Quercus lobata HOM05D005155 ORTHO05D006266 4.8e-39 166.0 507 33.5
MD17G1119200 Malus domestica HOM05D005155 ORTHO05D006266 6.3e-39 165.6 251 53.0
Cc00_g14350 Coffea canephora HOM05D005155 ORTHO05D006266 4.3e-32 142.9 115 67.0
Cc00_g18660 Coffea canephora HOM05D005155 ORTHO05D006266 1.3e-31 141.4 113 67.3
CiPaw.03G283900 Carya illinoinensis HOM05D005155 ORTHO05D006266 7.7e-29 132.1 339 37.2
Cc07_g20190 Coffea canephora HOM05D005155 ORTHO05D006266 2.2e-28 130.6 106 67.0
PSO782G5585 Papaver somniferum HOM05D005155 ORTHO05D006266 5.7e-24 115.9 290 34.5
AUR62008242 Chenopodium quinoa HOM05D005155 ORTHO05D006266 1.3e-23 114.8 135 49.6
AagrBONN_evm.TU.Sc2ySwM_368.2873 Anthoceros agrestis HOM05D005155 ORTHO05D006266 8.2e-23 112.1 201 40.8
QL01p014609 Quercus lobata HOM05D005155 ORTHO05D006266 1.1e-22 111.7 114 58.8
Cc07_g20180 Coffea canephora HOM05D005155 ORTHO05D006266 2.6e-21 107.1 104 60.6
PSO782G0752 Papaver somniferum HOM05D005155 ORTHO05D006266 3.2e-19 100.1 240 37.9
Mapoly0148s0006 Marchantia polymorpha HOM05D005155 ORTHO05D006266 4.2e-19 99.8 173 38.2
Nn1g02049 Nelumbo nucifera HOM05D005155 ORTHO05D006266 7.2e-19 99.0 203 37.9
Pp3c22_320 Physcomitrium patens HOM05D005155 ORTHO05D006266 5.2e-17 92.8 190 33.7
Pp3c22_322 Physcomitrium patens HOM05D005155 ORTHO05D006266 5.2e-17 92.8 190 33.7
Cc00_g29960 Coffea canephora HOM05D005155 ORTHO05D006266 1.8e-14 84.3 88 58.0
MD17G1119400 Malus domestica HOM05D005155 ORTHO05D006266 4.1e-14 83.2 80 63.8
CBR_g23113 Chara braunii HOM05D005155 ORTHO05D006266 5.3e-14 82.8 220 35.9
Hma1.2p1_1388F.1_g279940 Hydrangea macrophylla HOM05D005155 ORTHO05D006266 2.6e-13 80.5 63 65.1
Lj1A800T39 Lonicera japonica HOM05D005155 ORTHO05D006266 3.0e-09 67.0 50 70.0
PRCOL_00000835 Prasinoderma coloniale HOM05D005155 ORTHO05D006266 1.5e-08 64.7 183 31.7
QL03p064628 Quercus lobata HOM05D005155 ORTHO05D006266 8.2e-07 58.9 329 29.2


User provided reference genes

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