Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0006771 Helianthus annuus HOM05D003856 ORTHO05D004547 2.1e-135 485.7 248 100.0
ECA248G1273 Erigeron canadensis HOM05D003856 ORTHO05D004547 1.7e-132 476.1 246 98.0
HanXRQChr10g0285161 Helianthus annuus HOM05D003856 ORTHO05D004547 2.2e-132 475.7 248 96.8
Lsat_1_v5_gn_4_61900 Lactuca sativa HOM05D003856 ORTHO05D004547 5.3e-131 471.1 246 96.7
Lsat_1_v5_gn_0_29081 Lactuca sativa HOM05D003856 ORTHO05D004547 4.5e-130 468.0 246 95.1
Lj2A261T38 Lonicera japonica HOM05D003856 ORTHO05D004547 9.4e-128 460.3 246 93.9
TAR626G0303 Trochodendron aralioides HOM05D003856 ORTHO05D004547 1.2e-127 459.9 243 94.7
TAR627G0499 Trochodendron aralioides HOM05D003856 ORTHO05D004547 1.2e-127 459.9 246 93.5
TAR627G1166 Trochodendron aralioides HOM05D003856 ORTHO05D004547 1.2e-127 459.9 246 93.5
Nitab4.5_0004406g0030 Nicotiana tabacum HOM05D003856 ORTHO05D004547 2.1e-127 459.1 243 94.7
DCAR_004889 Daucus carota HOM05D003856 ORTHO05D004547 1.0e-126 456.8 244 93.9
Migut.M01400 Erythranthe guttata HOM05D003856 ORTHO05D004547 3.9e-126 454.9 246 92.3
Hma1.2p1_0657F.1_g197110 Hydrangea macrophylla HOM05D003856 ORTHO05D004547 5.1e-126 454.5 246 91.9
Dinv07408 Davidia involucrata HOM05D003856 ORTHO05D004547 1.1e-125 453.4 248 91.5
Aqoxy1G04060 Aquilegia oxysepala HOM05D003856 ORTHO05D004547 2.0e-125 452.6 243 91.8
PGR004G0563 Punica granatum HOM05D003856 ORTHO05D004547 5.7e-125 451.1 243 93.0
QL05p069616 Quercus lobata HOM05D003856 ORTHO05D004547 5.7e-125 451.1 246 91.1
Actinidia02310 Actinidia chinensis HOM05D003856 ORTHO05D004547 7.4e-125 450.7 246 91.5
MBI16_g31714_MAGBIO Magnolia biondii HOM05D003856 ORTHO05D004547 7.4e-125 450.7 243 92.2
TWI38G2230 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 9.7e-125 450.3 247 92.3
Cc09_g00840 Coffea canephora HOM05D003856 ORTHO05D004547 1.3e-124 449.9 247 92.7
SalBow8G1854 Salvia bowleyana HOM05D003856 ORTHO05D004547 1.3e-124 449.9 243 91.8
Sopen05g032590 Solanum pennellii HOM05D003856 ORTHO05D004547 1.3e-124 449.9 244 92.2
PGSC0003DMG400008443 Solanum tuberosum HOM05D003856 ORTHO05D004547 1.3e-124 449.9 244 92.2
CAN.G449.18 Capsicum annuum HOM05D003856 ORTHO05D004547 2.2e-124 449.1 244 92.2
Cfa010272 Carpinus fangiana HOM05D003856 ORTHO05D004547 2.2e-124 449.1 246 91.1
Nn1g07399 Nelumbo nucifera HOM05D003856 ORTHO05D004547 2.8e-124 448.7 243 91.4
CSS0032798 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 3.7e-124 448.4 246 90.7
CiPaw.09G102800 Carya illinoinensis HOM05D003856 ORTHO05D004547 3.7e-124 448.4 245 90.6
CiPaw.10G078300 Carya illinoinensis HOM05D003856 ORTHO05D004547 3.7e-124 448.4 245 90.2
SalBow1G0666 Salvia bowleyana HOM05D003856 ORTHO05D004547 3.7e-124 448.4 243 91.4
Actinidia26855 Actinidia chinensis HOM05D003856 ORTHO05D004547 4.8e-124 448.0 246 91.1
Atru.chr1.2436 Acer truncatum HOM05D003856 ORTHO05D004547 6.3e-124 447.6 243 92.2
Atru.chr1.2438 Acer truncatum HOM05D003856 ORTHO05D004547 6.3e-124 447.6 243 92.2
Eucgr.D01412 Eucalyptus grandis HOM05D003856 ORTHO05D004547 6.3e-124 447.6 243 90.1
Thecc.06G233900 Theobroma cacao HOM05D003856 ORTHO05D004547 6.3e-124 447.6 243 91.8
Solyc05g054100.3 Solanum lycopersicum HOM05D003856 ORTHO05D004547 8.2e-124 447.2 244 91.8
MD05G1358200 Malus domestica HOM05D003856 ORTHO05D004547 1.1e-123 446.8 243 91.8
Haze_06930 Corylus avellana HOM05D003856 ORTHO05D004547 1.4e-123 446.4 246 90.2
Manes.08G069500 Manihot esculenta HOM05D003856 ORTHO05D004547 1.4e-123 446.4 246 90.2
Ah.14g087610 Amaranthus hybridus HOM05D003856 ORTHO05D004547 1.8e-123 446.0 248 89.9
EL10Ac8g20193 Beta vulgaris HOM05D003856 ORTHO05D004547 1.8e-123 446.0 248 90.7
Hund06997 Selenicereus undatus HOM05D003856 ORTHO05D004547 1.8e-123 446.0 243 91.4
Sc17g0007760 Simmondsia chinensis HOM05D003856 ORTHO05D004547 1.8e-123 446.0 243 92.2
MD10G1332300 Malus domestica HOM05D003856 ORTHO05D004547 3.1e-123 445.3 243 91.4
SGA_v2.0_scaffold4G01871 Striga asiatica HOM05D003856 ORTHO05D004547 4.1e-123 444.9 243 90.5
Ciclev10016420m.g Citrus clementina HOM05D003856 ORTHO05D004547 7.0e-123 444.1 242 91.3
Potri.016G013100 Populus trichocarpa HOM05D003856 ORTHO05D004547 9.1e-123 443.7 246 87.8
FvH4_3g00930 Fragaria vesca HOM05D003856 ORTHO05D004547 1.2e-122 443.4 243 89.7
FAN25G1896 Fragaria x ananassa HOM05D003856 ORTHO05D004547 1.2e-122 443.4 243 89.7
Glyma.08G331200 Glycine max HOM05D003856 ORTHO05D004547 1.5e-122 443.0 246 89.8
Gohir.D10G008700 Gossypium hirsutum HOM05D003856 ORTHO05D004547 1.5e-122 443.0 246 89.8
Gorai.011G009500 Gossypium raimondii HOM05D003856 ORTHO05D004547 1.5e-122 443.0 246 89.8
CANSAT56G3590 Cannabis sativa HOM05D003856 ORTHO05D004547 2.6e-122 442.2 243 89.3
Glyma.18G075400 Glycine max HOM05D003856 ORTHO05D004547 3.4e-122 441.8 243 90.5
Gohir.D10G008800 Gossypium hirsutum HOM05D003856 ORTHO05D004547 3.4e-122 441.8 246 89.8
Gorai.011G009600 Gossypium raimondii HOM05D003856 ORTHO05D004547 3.4e-122 441.8 246 89.8
Potri.006G011500 Populus trichocarpa HOM05D003856 ORTHO05D004547 4.5e-122 441.4 246 87.8
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 5.9e-122 441.0 243 90.5
arahy.Tifrunner.gnm1.ann1.ZZ9Q5Y Arachis hypogaea HOM05D003856 ORTHO05D004547 5.9e-122 441.0 243 90.5
Gohir.A10G009100 Gossypium hirsutum HOM05D003856 ORTHO05D004547 5.9e-122 441.0 246 89.8
Lj5g0025471 Lotus japonicus HOM05D003856 ORTHO05D004547 5.9e-122 441.0 246 89.4
RcHm_v2.0_Chr5g0001451 Rosa chinensis HOM05D003856 ORTHO05D004547 5.9e-122 441.0 243 89.7
MSTRG.7166 Avicennia marina HOM05D003856 ORTHO05D004547 7.7e-122 440.7 243 89.3
Cpa.g.sc75.112 Carica papaya HOM05D003856 ORTHO05D004547 7.7e-122 440.7 246 89.0
Duzib192G0794 Durio zibethinus HOM05D003856 ORTHO05D004547 7.7e-122 440.7 243 90.5
Duzib235G1167 Durio zibethinus HOM05D003856 ORTHO05D004547 7.7e-122 440.7 243 90.1
Prupe.4G009900 Prunus persica HOM05D003856 ORTHO05D004547 7.7e-122 440.7 243 90.9
THA.LOC104812995 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 7.7e-122 440.7 246 87.8
A09p26760 Brassica napus HOM05D003856 ORTHO05D004547 1.0e-121 440.3 243 89.3
C09p33910 Brassica napus HOM05D003856 ORTHO05D004547 1.0e-121 440.3 243 89.3
BolC9t56227H Brassica oleracea HOM05D003856 ORTHO05D004547 1.0e-121 440.3 243 89.3
BraA09t38248Z Brassica rapa HOM05D003856 ORTHO05D004547 1.0e-121 440.3 243 89.3
arahy.Tifrunner.gnm1.ann1.D1JSNC Arachis hypogaea HOM05D003856 ORTHO05D004547 1.3e-121 439.9 243 90.1
arahy.Tifrunner.gnm1.ann1.GCV40F Arachis hypogaea HOM05D003856 ORTHO05D004547 1.3e-121 439.9 243 90.1
Gohir.A10G009000 Gossypium hirsutum HOM05D003856 ORTHO05D004547 1.3e-121 439.9 246 89.4
VMungo0540G0895 Vigna mungo HOM05D003856 ORTHO05D004547 1.7e-121 439.5 246 89.0
BcaB03g11729 Brassica carinata HOM05D003856 ORTHO05D004547 2.9e-121 438.7 243 89.3
Aa31LG9G10060 Aethionema arabicum HOM05D003856 ORTHO05D004547 3.8e-121 438.3 243 89.3
BcaC04g21245 Brassica carinata HOM05D003856 ORTHO05D004547 3.8e-121 438.3 243 88.9
DCAR_027821 Daucus carota HOM05D003856 ORTHO05D004547 3.8e-121 438.3 285 80.7
Phvul.006G059000 Phaseolus vulgaris HOM05D003856 ORTHO05D004547 6.5e-121 437.6 246 89.0
BcaB01g01755 Brassica carinata HOM05D003856 ORTHO05D004547 8.5e-121 437.2 243 88.5
ClCG01G010160 Citrullus lanatus HOM05D003856 ORTHO05D004547 8.5e-121 437.2 246 87.4
CsaV3_1G017260 Cucumis sativus L. HOM05D003856 ORTHO05D004547 8.5e-121 437.2 246 87.4
FAN21G0260 Fragaria x ananassa HOM05D003856 ORTHO05D004547 8.5e-121 437.2 248 87.9
Sed0026067 Sechium edule HOM05D003856 ORTHO05D004547 8.5e-121 437.2 246 87.4
BcaC01g00774 Brassica carinata HOM05D003856 ORTHO05D004547 1.1e-120 436.8 243 88.9
A08p15680 Brassica napus HOM05D003856 ORTHO05D004547 1.1e-120 436.8 243 88.9
CDE04G3203 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 1.4e-120 436.4 243 88.9
CDE06G2351 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 1.4e-120 436.4 243 88.5
THA.LOC104813601 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 1.4e-120 436.4 243 88.9
AT4G12590 Arabidopsis thaliana HOM05D003856 ORTHO05D004547 1.9e-120 436.0 243 88.1
Ca_10008_v3 Cicer arietinum L. HOM05D003856 ORTHO05D004547 1.9e-120 436.0 247 88.7
Lalb_Chr06g0168331 Lupinus albus HOM05D003856 ORTHO05D004547 1.9e-120 436.0 243 89.3
Nitab4.5_0001735g0170 Nicotiana tabacum HOM05D003856 ORTHO05D004547 1.9e-120 436.0 244 91.8
C03p84130 Brassica napus HOM05D003856 ORTHO05D004547 2.5e-120 435.6 243 88.5
BolC3t20692H Brassica oleracea HOM05D003856 ORTHO05D004547 2.5e-120 435.6 243 88.5
Sed0028227 Sechium edule HOM05D003856 ORTHO05D004547 2.5e-120 435.6 246 87.4
BraA08t33548Z Brassica rapa HOM05D003856 ORTHO05D004547 3.2e-120 435.3 243 88.5
C01p16660 Brassica napus HOM05D003856 ORTHO05D004547 4.2e-120 434.9 243 88.1
AL6G47550 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 5.5e-120 434.5 243 87.7
Lalb_Chr02g0149201 Lupinus albus HOM05D003856 ORTHO05D004547 7.2e-120 434.1 246 88.2
Carub.0006s3186 Capsella rubella HOM05D003856 ORTHO05D004547 9.4e-120 433.7 243 87.7
A01p13750 Brassica napus HOM05D003856 ORTHO05D004547 1.6e-119 433.0 243 87.7
BraA01t01320Z Brassica rapa HOM05D003856 ORTHO05D004547 1.6e-119 433.0 243 87.7
AL7G31210 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 2.1e-119 432.6 243 87.7
Rhsim02G0099500 Rhododendron simsii HOM05D003856 ORTHO05D004547 2.1e-119 432.6 270 83.3
Thhalv10026090m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 2.7e-119 432.2 243 88.1
BolC1t01613H Brassica oleracea HOM05D003856 ORTHO05D004547 4.7e-119 431.4 243 87.7
PSO541G3298 Papaver somniferum HOM05D003856 ORTHO05D004547 6.1e-119 431.0 244 88.1
PSO675G7111 Papaver somniferum HOM05D003856 ORTHO05D004547 1.8e-118 429.5 244 87.7
Sp7g20520 Schrenkiella parvula HOM05D003856 ORTHO05D004547 2.3e-118 429.1 243 86.8
CARHR253580 Cardamine hirsuta HOM05D003856 ORTHO05D004547 6.7e-118 427.6 243 87.7
Thhalv10028913m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 8.8e-118 427.2 243 86.8
Psat6g143120 Pisum sativum HOM05D003856 ORTHO05D004547 8.8e-118 427.2 247 86.6
Sp6g04920 Schrenkiella parvula HOM05D003856 ORTHO05D004547 8.8e-118 427.2 243 86.0
Nn1g03306 Nelumbo nucifera HOM05D003856 ORTHO05D004547 1.5e-117 426.4 235 89.8
CARHR229320 Cardamine hirsuta HOM05D003856 ORTHO05D004547 3.3e-117 425.2 244 86.9
TWI63G1684 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 3.3e-117 425.2 288 77.8
Peaxi162Scf00990g00017 Petunia axillaris HOM05D003856 ORTHO05D004547 7.4e-117 424.1 243 89.3
BcaC09g51102 Brassica carinata HOM05D003856 ORTHO05D004547 1.7e-116 422.9 244 86.5
Medtr1g079890 Medicago truncatula HOM05D003856 ORTHO05D004547 1.7e-116 422.9 247 86.2
unitig_61.g26092 Utricularia gibba HOM05D003856 ORTHO05D004547 1.7e-116 422.9 263 82.5
Oeu009395.1 Olea europaea HOM05D003856 ORTHO05D004547 3.7e-116 421.8 305 73.1
TPR.G32278 Trifolium pratense HOM05D003856 ORTHO05D004547 8.2e-116 420.6 247 86.2
Zm00001eb102120 Zea mays HOM05D003856 ORTHO05D004547 6.5e-113 411.0 252 83.3
AagrBONN_evm.TU.Sc2ySwM_362.305 Anthoceros agrestis HOM05D003856 ORTHO05D004547 2.7e-111 405.6 249 80.3
Mapoly0029s0061 Marchantia polymorpha HOM05D003856 ORTHO05D004547 5.2e-110 401.4 253 79.1
Pp3c11_24600 Physcomitrium patens HOM05D003856 ORTHO05D004547 1.2e-109 400.2 254 79.1
Sabra06G0009100 Salix brachista HOM05D003856 ORTHO05D004547 2.6e-109 399.1 333 64.3
Os09g0497400 Oryza sativa ssp. japonica HOM05D003856 ORTHO05D004547 5.7e-109 397.9 252 80.2
SMO239G0047 Selaginella moellendorffii HOM05D003856 ORTHO05D004547 2.8e-108 395.6 252 77.8
GSVIVG01003331001 Vitis vinifera HOM05D003856 ORTHO05D004547 1.8e-107 392.9 210 91.4
GSVIVG01003337001 Vitis vinifera HOM05D003856 ORTHO05D004547 1.8e-107 392.9 210 91.4
Pp3c7_950 Physcomitrium patens HOM05D003856 ORTHO05D004547 4.1e-107 391.7 254 76.4
Haze_06937 Corylus avellana HOM05D003856 ORTHO05D004547 2.7e-106 389.0 265 77.0
Sabra16G0002300 Salix brachista HOM05D003856 ORTHO05D004547 1.0e-105 387.1 214 88.3
vmacro15762 Vaccinium macrocarpon HOM05D003856 ORTHO05D004547 1.5e-101 373.2 360 59.2
ATR0712G091 Amborella trichopoda HOM05D003856 ORTHO05D004547 3.4e-101 372.1 213 86.9
SHI24455 Sapria himalayana HOM05D003856 ORTHO05D004547 5.7e-93 344.7 245 73.5
Nitab4.5_0003626g0020 Nicotiana tabacum HOM05D003856 ORTHO05D004547 6.6e-89 331.3 247 72.1
Lj1C1240G8 Lonicera japonica HOM05D003856 ORTHO05D004547 9.5e-88 327.4 198 87.4
Gorai.013G129800 Gossypium raimondii HOM05D003856 ORTHO05D004547 5.2e-86 321.6 246 71.1
AUR62012797 Chenopodium quinoa HOM05D003856 ORTHO05D004547 3.0e-81 305.8 172 89.5
MELO3C021687.2 Cucumis melo HOM05D003856 ORTHO05D004547 3.0e-81 305.8 179 85.5
CSS0048239 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 5.0e-81 305.1 164 91.5
AUR62021855 Chenopodium quinoa HOM05D003856 ORTHO05D004547 6.6e-81 304.7 172 89.5
Lalb_Chr21g0311231 Lupinus albus HOM05D003856 ORTHO05D004547 2.1e-79 299.7 165 89.1
HPP92_000415 Vanilla planifolia HOM05D003856 ORTHO05D004547 6.2e-71 271.6 276 55.4
MCO07G661 Micromonas commoda HOM05D003856 ORTHO05D004547 7.6e-61 238.0 242 49.6
SEGI_40422 Sequoiadendron giganteum HOM05D003856 ORTHO05D004547 4.6e-58 228.8 138 81.9
Haze_26609 Corylus avellana HOM05D003856 ORTHO05D004547 4.8e-47 192.2 232 43.1
Gorai.012G047500 Gossypium raimondii HOM05D003856 ORTHO05D004547 1.4e-46 190.7 246 49.6
Cre09.g400400 Chlamydomonas reinhardtii HOM05D003856 ORTHO05D004547 4.0e-46 189.1 250 43.2
MD10G1332200 Malus domestica HOM05D003856 ORTHO05D004547 5.8e-45 185.3 102 88.2
SEGI_31097 Sequoiadendron giganteum HOM05D003856 ORTHO05D004547 6.7e-41 171.8 96 87.5
Carub.0007s1888 Capsella rubella HOM05D003856 ORTHO05D004547 7.4e-40 168.3 199 53.3
CSS0021523 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 4.2e-35 152.5 164 54.3
COL.COLO4_31891 Corchorus olitorius HOM05D003856 ORTHO05D004547 4.0e-30 136.0 137 56.2
Lalb_Chr21g0311241 Lupinus albus HOM05D003856 ORTHO05D004547 5.8e-29 132.1 82 79.3
C01p16690 Brassica napus HOM05D003856 ORTHO05D004547 1.4e-27 127.5 84 75.0
CARHR290760 Cardamine hirsuta HOM05D003856 ORTHO05D004547 1.8e-25 120.6 83 73.5
PRCOL_00006309 Prasinoderma coloniale HOM05D003856 ORTHO05D004547 1.5e-24 117.5 229 36.2
AL649U10020 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 3.3e-24 116.3 82 73.2
Carub.0008s0836 Capsella rubella HOM05D003856 ORTHO05D004547 1.6e-23 114.0 215 41.9
CBR_g38137 Chara braunii HOM05D003856 ORTHO05D004547 1.7e-20 104.0 101 50.5
Migut.L00276 Erythranthe guttata HOM05D003856 ORTHO05D004547 4.6e-18 95.9 51 88.2
COL.COLO4_31890 Corchorus olitorius HOM05D003856 ORTHO05D004547 3.3e-16 89.7 57 80.7
Hund21152 Selenicereus undatus HOM05D003856 ORTHO05D004547 3.7e-15 86.3 46 84.8
HPP92_000455 Vanilla planifolia HOM05D003856 ORTHO05D004547 9.1e-14 81.6 51 80.4
vmacro04321 Vaccinium macrocarpon HOM05D004428 ORTHO05D013648 1.5e-13 80.9 76 60.5
Oeu040759.1 Olea europaea HOM05D003856 ORTHO05D004547 2.0e-13 80.5 52 82.7
Dinv13969 Davidia involucrata HOM05D003856 ORTHO05D004547 1.1e-11 74.7 79 54.4
Ah.14g078790 Amaranthus hybridus HOM05D006286 ORTHO05D007741 7.2e-11 72.0 38 86.8
vmacro16921 Vaccinium macrocarpon HOM05D000007 ORTHO05D013648 1.4e-09 67.8 96 49.0
Rhsim07G0218800 Rhododendron simsii HOM05D003856 ORTHO05D013648 3.0e-09 66.6 94 46.8
FAN07G2353 Fragaria x ananassa HOM05D003856 ORTHO05D004547 1.1e-08 64.7 45 75.6
vmacro22601 Vaccinium macrocarpon HOM05D003856 ORTHO05D426869 6.3e-07 58.9 89 46.1
Rhsim07G0218900 Rhododendron simsii HOM05D003856 ORTHO05D013648 1.8e-06 57.4 98 42.9
A05p11440 Brassica napus HOM05D003856 ORTHO05D004547 9.1e-06 55.1 32 71.9
C04p14930 Brassica napus HOM05D003856 ORTHO05D004547 9.1e-06 55.1 32 71.9
BraA05t20093Z Brassica rapa HOM05D003856 ORTHO05D004547 9.1e-06 55.1 32 71.9


User provided reference genes

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