Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 4.2e-90 334.7 174 100.0
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 9.7e-55 217.2 143 82.5
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 1.3e-51 206.8 143 77.6
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 3.0e-48 195.7 143 72.7
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 2.0e-47 193.0 143 70.6
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 2.6e-47 192.6 142 72.5
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 3.3e-47 192.2 143 69.2
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 5.7e-47 191.4 143 70.6
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 5.7e-47 191.4 143 70.6
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 9.7e-47 190.7 143 69.2
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 6.3e-46 188.0 143 69.9
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 6.3e-46 188.0 143 69.9
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 6.3e-46 188.0 143 69.9
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 6.3e-46 188.0 143 68.5
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 6.3e-46 188.0 143 68.5
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 8.2e-46 187.6 143 68.5
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 8.2e-46 187.6 143 68.5
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 1.1e-45 187.2 145 69.0
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 1.1e-45 187.2 144 67.4
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.4e-45 186.8 145 69.0
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 1.8e-45 186.4 144 67.4
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 1.8e-45 186.4 145 66.9
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 3.1e-45 185.7 143 67.8
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 4.1e-45 185.3 143 67.8
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 4.1e-45 185.3 145 68.3
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 4.1e-45 185.3 145 68.3
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 5.3e-45 184.9 143 67.8
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 7.0e-45 184.5 144 66.0
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 7.0e-45 184.5 143 66.4
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.2e-44 183.7 145 67.6
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 1.2e-44 183.7 143 65.0
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 2.0e-44 183.0 144 66.0
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 2.0e-44 183.0 143 65.7
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 3.5e-44 182.2 145 64.8
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 3.5e-44 182.2 145 64.8
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 3.5e-44 182.2 145 64.8
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 7.7e-44 181.0 142 65.5
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 7.7e-44 181.0 143 65.7
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 1.0e-43 180.6 143 66.4
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 1.7e-43 179.9 143 63.6
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 2.2e-43 179.5 144 64.6
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 3.8e-43 178.7 142 64.8
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 3.8e-43 178.7 142 64.8
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 5.0e-43 178.3 145 62.8
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 6.5e-43 177.9 143 65.0
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 8.5e-43 177.6 143 63.6
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 8.5e-43 177.6 145 63.4
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 8.5e-43 177.6 145 63.4
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 8.5e-43 177.6 185 55.7
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 1.1e-42 177.2 143 66.4
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 1.1e-42 177.2 145 62.1
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 1.5e-42 176.8 144 63.9
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 1.9e-42 176.4 145 61.4
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 2.5e-42 176.0 144 63.9
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 2.5e-42 176.0 145 62.1
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 4.2e-42 175.3 143 64.3
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 4.2e-42 175.3 147 61.9
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 5.5e-42 174.9 142 62.7
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 5.5e-42 174.9 143 63.6
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 5.5e-42 174.9 144 61.1
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 9.4e-42 174.1 145 60.7
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 1.6e-41 173.3 145 60.7
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 4.7e-41 171.8 143 62.2
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 4.7e-41 171.8 142 62.7
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 4.7e-41 171.8 142 62.7
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 4.7e-41 171.8 142 62.7
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 8.0e-41 171.0 139 64.7
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.0e-40 170.6 143 60.8
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 1.8e-40 169.9 145 58.6
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 1.8e-40 169.9 145 58.6
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 1.8e-40 169.9 145 61.4
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 2.3e-40 169.5 142 61.3
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 3.0e-40 169.1 143 60.1
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 3.0e-40 169.1 145 61.4
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 4.0e-40 168.7 142 61.3
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 5.2e-40 168.3 139 63.3
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 6.7e-40 167.9 141 61.7
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 1.2e-39 167.2 142 60.6
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 1.5e-39 166.8 143 59.4
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 3.3e-39 165.6 146 61.6
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 9.7e-39 164.1 146 61.0
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 2.8e-38 162.5 143 59.4
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 3.7e-38 162.2 145 60.7
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 1.1e-37 160.6 145 56.6
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 1.8e-37 159.8 144 58.3
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 1.8e-37 159.8 139 59.7
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 4.1e-37 158.7 145 55.9
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 4.1e-37 158.7 143 57.3
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 1.6e-36 156.8 147 55.1
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 3.5e-36 155.6 139 60.4
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 4.5e-36 155.2 147 55.1
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 1.3e-35 153.7 140 57.1
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 2.9e-35 152.5 143 57.3
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 2.9e-35 152.5 98 77.6
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 6.5e-35 151.4 141 53.9
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 6.5e-35 151.4 143 56.6
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 8.5e-35 151.0 143 55.9
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 1.1e-34 150.6 145 52.4
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 1.5e-34 150.2 139 57.6
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 1.9e-34 149.8 143 53.1
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 1.9e-34 149.8 143 53.1
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 1.9e-34 149.8 143 53.1
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 3.2e-34 149.1 143 53.1
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 3.2e-34 149.1 143 53.1
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 9.4e-34 147.5 140 55.0
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 9.4e-34 147.5 110 67.3
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.2e-33 147.1 145 53.8
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 3.0e-32 142.5 101 67.3
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 5.2e-32 141.7 98 69.4
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 6.8e-32 141.4 143 51.0
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 6.8e-32 141.4 147 50.3
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 4.4e-31 138.7 143 51.7
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 5.4e-29 131.7 146 51.4
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 1.2e-28 130.6 103 59.2
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.6e-28 130.2 146 47.9
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 8.6e-27 124.4 146 47.9
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 1.2e-23 114.0 143 45.5
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 2.0e-23 113.2 139 43.9
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 1.7e-22 110.2 133 42.1
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 1.7e-22 110.2 133 42.1
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 6.3e-22 108.2 80 66.2
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 2.3e-19 99.8 133 39.8
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 3.8e-19 99.0 133 39.8
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 3.3e-18 95.9 93 60.2
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 8.0e-17 91.3 80 63.8
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 7.5e-15 84.7 61 60.7
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 4.1e-13 79.0 121 37.2
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 2.5e-10 69.7 153 31.4
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 8.0e-09 64.7 164 29.9


User provided reference genes

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