Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0005571 Helianthus annuus HOM05D004643 ORTHO05D005535 1.0e-168 596.7 305 100.0
HanXRQChr11g0338851 Helianthus annuus HOM05D004643 ORTHO05D005535 4.1e-117 425.2 308 78.2
Lsat_1_v5_gn_5_185821 Lactuca sativa HOM05D004643 ORTHO05D005535 1.5e-114 416.8 305 76.4
ECA248G3352 Erigeron canadensis HOM05D004643 ORTHO05D005535 1.4e-112 410.2 299 76.6
Lsat_1_v5_gn_8_94021 Lactuca sativa HOM05D004643 ORTHO05D005535 3.0e-83 312.8 304 61.5
Dinv22507 Davidia involucrata HOM05D004643 ORTHO05D005535 1.1e-80 304.3 317 56.8
Hma1.2p1_0172F.1_g075970 Hydrangea macrophylla HOM05D004643 ORTHO05D005535 2.0e-79 300.1 310 57.7
CSS0031620 Camellia sinensis var. sinensis HOM05D004643 ORTHO05D005535 2.5e-74 283.1 322 55.3
Actinidia19959 Actinidia chinensis HOM05D004643 ORTHO05D005535 2.6e-71 273.1 320 54.1
Migut.O00727 Erythranthe guttata HOM05D004643 ORTHO05D005535 2.2e-70 270.0 317 51.7
DCAR_002706 Daucus carota HOM05D004643 ORTHO05D005535 2.4e-69 266.5 318 52.2
Actinidia09108 Actinidia chinensis HOM05D004643 ORTHO05D005535 5.4e-69 265.4 326 54.0
Cc01_g19060 Coffea canephora HOM05D004643 ORTHO05D005535 7.1e-69 265.0 329 52.6
Migut.N02031 Erythranthe guttata HOM05D004643 ORTHO05D005535 7.9e-68 261.5 318 51.3
MSTRG.21530 Avicennia marina HOM05D004643 ORTHO05D005535 6.7e-67 258.5 318 50.6
Sabra05G0163800 Salix brachista HOM05D004643 ORTHO05D005535 4.0e-64 249.2 338 48.2
PGSC0003DMG400019346 Solanum tuberosum HOM05D004643 ORTHO05D005535 5.3e-64 248.8 315 51.7
CAN.G380.10 Capsicum annuum HOM05D004643 ORTHO05D005535 9.0e-64 248.1 316 50.6
Potri.002G048500 Populus trichocarpa HOM05D004643 ORTHO05D005535 1.5e-63 247.3 325 49.2
Solyc09g065630.3 Solanum lycopersicum HOM05D004643 ORTHO05D005535 5.8e-63 245.4 310 50.3
GSVIVG01003113001 Vitis vinifera HOM05D004643 ORTHO05D005535 6.4e-62 241.9 317 48.3
Potri.005G214300 Populus trichocarpa HOM05D004643 ORTHO05D005535 2.4e-61 240.0 329 47.7
Sopen09g027380 Solanum pennellii HOM05D004643 ORTHO05D005535 2.4e-61 240.0 310 50.0
Nitab4.5_0000252g0230 Nicotiana tabacum HOM05D004643 ORTHO05D005535 2.1e-60 236.9 317 48.3
Ciclev10021137m.g Citrus clementina HOM05D004643 ORTHO05D005535 3.3e-58 229.6 305 48.9
Lj2C1166G12 Lonicera japonica HOM05D004643 ORTHO05D005535 5.6e-58 228.8 318 48.7
Nitab4.5_0000871g0020 Nicotiana tabacum HOM05D004643 ORTHO05D005535 9.6e-58 228.0 312 47.8
TAR362G0460 Trochodendron aralioides HOM05D004643 ORTHO05D005535 9.6e-58 228.0 316 47.5
Peaxi162Scf00230g00029 Petunia axillaris HOM05D004643 ORTHO05D005535 1.3e-57 227.6 315 47.9
Nitab4.5_0001044g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 4.8e-57 225.7 317 47.3
SalBow4G2540 Salvia bowleyana HOM05D004643 ORTHO05D005535 6.2e-57 225.3 274 50.0
Thecc.01G272300 Theobroma cacao HOM05D004643 ORTHO05D005535 1.8e-56 223.8 329 47.4
Rhsim13G0028400 Rhododendron simsii HOM05D004643 ORTHO05D005535 5.3e-56 222.2 410 42.4
Duzib211G0433 Durio zibethinus HOM05D004643 ORTHO05D005535 2.2e-54 216.9 320 45.3
Nn6g34159 Nelumbo nucifera HOM05D004643 ORTHO05D005535 2.2e-54 216.9 321 47.0
SGA_v2.0_scaffold138G35301 Striga asiatica HOM05D004643 ORTHO05D005535 2.9e-54 216.5 296 47.3
Nitab4.5_0015056g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 2.5e-53 213.4 307 46.6
Solyc06g084120.4 Solanum lycopersicum HOM05D004643 ORTHO05D005535 3.5e-52 209.5 305 47.5
PGSC0003DMG401020059 Solanum tuberosum HOM05D004643 ORTHO05D005535 4.6e-52 209.1 311 46.0
CAN.G771.7 Capsicum annuum HOM05D004643 ORTHO05D005535 5.1e-51 205.7 312 46.2
Atru.chr5.1514 Acer truncatum HOM05D004643 ORTHO05D005535 1.1e-50 204.5 314 44.3
Gohir.A12G002900 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.5e-50 204.1 295 47.8
Duzib138G1309 Durio zibethinus HOM05D004643 ORTHO05D005535 1.9e-50 203.8 318 44.3
SGA_v2.0_scaffold1G00527 Striga asiatica HOM05D004643 ORTHO05D005535 4.3e-50 202.6 268 46.6
Aqoxy5G00405 Aquilegia oxysepala HOM05D004643 ORTHO05D005535 2.1e-49 200.3 328 41.8
CiPaw.02G121300 Carya illinoinensis HOM05D004643 ORTHO05D005535 2.1e-49 200.3 314 44.9
Duzib133G1145 Durio zibethinus HOM05D004643 ORTHO05D005535 2.8e-49 199.9 270 48.5
Nn1g02445 Nelumbo nucifera HOM05D004643 ORTHO05D005535 4.8e-49 199.1 273 46.5
MSTRG.18264 Avicennia marina HOM05D004643 ORTHO05D005535 8.2e-49 198.4 252 48.0
Gorai.008G002400 Gossypium raimondii HOM05D004643 ORTHO05D005535 1.1e-48 198.0 297 47.5
Manes.05G081400 Manihot esculenta HOM05D004643 ORTHO05D005535 1.1e-48 198.0 248 50.4
Gorai.004G077100 Gossypium raimondii HOM05D004643 ORTHO05D005535 1.4e-48 197.6 326 43.3
Sabra02G0039600 Salix brachista HOM05D004643 ORTHO05D005535 1.4e-48 197.6 316 43.7
Gohir.D12G002600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 4.1e-48 196.1 295 46.1
Sopen06g035500 Solanum pennellii HOM05D004643 ORTHO05D005535 5.3e-48 195.7 265 48.7
Dinv32890 Davidia involucrata HOM05D004643 ORTHO05D005535 6.9e-48 195.3 222 53.6
CsaV3_2G013410 Cucumis sativus L. HOM05D004643 ORTHO05D005535 1.3e-46 191.0 287 43.6
unitig_0.g136 Utricularia gibba HOM05D004643 ORTHO05D005535 2.2e-46 190.3 312 41.7
GSVIVG01018038001 Vitis vinifera HOM05D004643 ORTHO05D005535 6.5e-46 188.7 313 42.8
PSO170G0554 Papaver somniferum HOM05D004643 ORTHO05D005535 1.4e-45 187.6 304 43.8
VMungo0720G0668 Vigna mungo HOM05D004643 ORTHO05D005535 1.6e-44 184.1 309 45.0
CANSAT78G2233 Cannabis sativa HOM05D004643 ORTHO05D005535 2.7e-44 183.3 302 43.4
PSO210G1486 Papaver somniferum HOM05D004643 ORTHO05D005535 2.7e-44 183.3 303 43.6
TAR636G3033 Trochodendron aralioides HOM05D004643 ORTHO05D005535 3.6e-44 183.0 336 42.9
Lj5g0008364 Lotus japonicus HOM05D004643 ORTHO05D005535 4.6e-44 182.6 310 43.5
MBI11_g22675_MAGBIO Magnolia biondii HOM05D004643 ORTHO05D005535 4.6e-44 182.6 331 40.8
Haze_11230 Corylus avellana HOM05D004643 ORTHO05D005535 6.1e-44 182.2 307 41.0
Prupe.1G020900 Prunus persica HOM05D004643 ORTHO05D005535 3.9e-43 179.5 315 41.0
RcHm_v2.0_Chr4g0387691 Rosa chinensis HOM05D004643 ORTHO05D005535 3.9e-43 179.5 309 42.7
Glyma.10G244400 Glycine max HOM05D004643 ORTHO05D005535 5.1e-43 179.1 312 43.6
ClCG06G006490 Citrullus lanatus HOM05D004643 ORTHO05D005535 8.7e-43 178.3 282 44.3
Manes.15G032500 Manihot esculenta HOM05D004643 ORTHO05D005535 8.7e-43 178.3 305 42.3
Phvul.007G061400 Phaseolus vulgaris HOM05D004643 ORTHO05D005535 8.7e-43 178.3 308 43.5
AUR62024080 Chenopodium quinoa HOM05D004643 ORTHO05D005535 1.1e-42 177.9 289 43.9
Medtr1g102900 Medicago truncatula HOM05D004643 ORTHO05D005535 1.9e-42 177.2 308 43.5
Glyma.20G150000 Glycine max HOM05D004643 ORTHO05D005535 4.3e-42 176.0 314 43.0
MD13G1199500 Malus domestica HOM05D004643 ORTHO05D005535 4.3e-42 176.0 317 41.6
Gohir.A08G064300 Gossypium hirsutum HOM05D004643 ORTHO05D005535 5.7e-42 175.6 276 43.5
Psat6g204360 Pisum sativum HOM05D004643 ORTHO05D005535 5.7e-42 175.6 266 48.5
QL06p001136 Quercus lobata HOM05D004643 ORTHO05D005535 5.7e-42 175.6 345 40.6
AUR62034685 Chenopodium quinoa HOM05D004643 ORTHO05D005535 1.3e-41 174.5 299 43.5
Sed0027490 Sechium edule HOM05D004643 ORTHO05D005535 1.3e-41 174.5 306 40.8
MD16G1199200 Malus domestica HOM05D004643 ORTHO05D005535 4.8e-41 172.6 312 42.3
Sed0024780 Sechium edule HOM05D004643 ORTHO05D005535 1.4e-40 171.0 260 44.6
FvH4_4g01120 Fragaria vesca HOM05D004643 ORTHO05D005535 3.1e-40 169.9 312 41.0
BcaB04g18255 Brassica carinata HOM05D004643 ORTHO05D005535 4.1e-40 169.5 270 41.9
FAN12G4007 Fragaria x ananassa HOM05D004643 ORTHO05D005535 4.1e-40 169.5 312 41.0
Thecc.04G238200 Theobroma cacao HOM05D004643 ORTHO05D005535 4.1e-40 169.5 318 38.4
TPR.G26097 Trifolium pratense HOM05D004643 ORTHO05D005535 2.0e-39 167.2 313 42.8
Ca_10855_v3 Cicer arietinum L. HOM05D004643 ORTHO05D005535 5.9e-39 165.6 314 42.0
Duzib151G1159 Durio zibethinus HOM05D004643 ORTHO05D005535 1.3e-38 164.5 307 39.4
PGR004G2239 Punica granatum HOM05D004643 ORTHO05D005535 2.9e-38 163.3 318 40.3
Oeu047218.1 Olea europaea HOM05D004643 ORTHO05D005535 3.8e-38 162.9 225 47.6
Sp7g12820 Schrenkiella parvula HOM05D004643 ORTHO05D005535 1.1e-37 161.4 282 41.1
A08p11380 Brassica napus HOM05D004643 ORTHO05D005535 1.4e-37 161.0 276 39.5
BolC8t48230H Brassica oleracea HOM05D004643 ORTHO05D005535 2.5e-37 160.2 268 39.9
AT4G14720 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 7.2e-37 158.7 303 38.6
MELO3C014283.2 Cucumis melo HOM05D004643 ORTHO05D005535 7.2e-37 158.7 276 39.1
Lalb_Chr21g0304771 Lupinus albus HOM05D004643 ORTHO05D005535 7.2e-37 158.7 294 42.2
Ciclev10005357m.g Citrus clementina HOM05D004643 ORTHO05D005535 9.4e-37 158.3 315 40.3
BraA08t33131Z Brassica rapa HOM05D004643 ORTHO05D005535 1.2e-36 157.9 268 39.6
A01p22960 Brassica napus HOM05D004643 ORTHO05D005535 2.1e-36 157.1 282 40.1
BraA01t02209Z Brassica rapa HOM05D004643 ORTHO05D005535 2.7e-36 156.8 283 39.9
Eucgr.H03414 Eucalyptus grandis HOM05D004643 ORTHO05D005535 3.6e-36 156.4 310 39.0
THA.LOC104803050 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 3.6e-36 156.4 290 40.3
BcaC09g50142 Brassica carinata HOM05D004643 ORTHO05D005535 4.6e-36 156.0 285 40.4
Thhalv10025735m.g Eutrema salsugineum HOM05D004643 ORTHO05D005535 4.6e-36 156.0 291 39.9
FAN22G0811 Fragaria x ananassa HOM05D002305 ORTHO05D002528 4.6e-36 156.0 263 41.8
CARHR221190 Cardamine hirsuta HOM05D004643 ORTHO05D005535 6.1e-36 155.6 279 39.1
FAN17G1992 Fragaria x ananassa HOM05D002305 ORTHO05D002528 6.1e-36 155.6 268 42.5
C01p28440 Brassica napus HOM05D004643 ORTHO05D005535 7.9e-36 155.2 286 40.2
BcaNung00344 Brassica carinata HOM05D004643 ORTHO05D005535 1.0e-35 154.8 287 40.8
Carub.0007s2745 Capsella rubella HOM05D004643 ORTHO05D005535 1.4e-35 154.5 302 39.4
Carub.0007s2747 Capsella rubella HOM05D004643 ORTHO05D005535 1.4e-35 154.5 312 38.8
Ah.00g000940 Amaranthus hybridus HOM05D004643 ORTHO05D005535 6.7e-35 152.1 211 45.5
BolC1t02783H Brassica oleracea HOM05D004643 ORTHO05D005535 8.8e-35 151.8 286 39.9
CDE10G0665 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 1.1e-34 151.4 263 40.7
Manes.03G173500 Manihot esculenta HOM05D004643 ORTHO05D005535 2.0e-34 150.6 264 42.4
BcaC07g37843 Brassica carinata HOM05D004643 ORTHO05D005535 2.6e-34 150.2 280 40.0
EL10Ac3g06512 Beta vulgaris HOM05D004643 ORTHO05D005535 4.4e-34 149.4 188 49.5
Cpa.g.sc44.119 Carica papaya HOM05D004643 ORTHO05D005535 7.4e-34 148.7 275 41.1
Aa31LG9G2640 Aethionema arabicum HOM05D004643 ORTHO05D005535 9.7e-34 148.3 274 42.3
vmacro02609 Vaccinium macrocarpon HOM05D004643 ORTHO05D005535 9.7e-34 148.3 192 50.0
Atru.chr4.2372 Acer truncatum HOM05D004643 ORTHO05D005535 2.8e-33 146.7 315 37.1
AL7G41265 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 2.8e-33 146.7 304 37.8
TAR365G0093 Trochodendron aralioides HOM05D001497 ORTHO05D001707 4.8e-33 146.0 235 44.3
Gohir.A10G113842 Gossypium hirsutum HOM05D004643 ORTHO05D005535 6.3e-33 145.6 336 37.5
Gohir.D10G151600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 6.3e-33 145.6 337 37.1
Atru.chr4.2396 Acer truncatum HOM05D004643 ORTHO05D005535 1.4e-32 144.4 315 36.8
Peaxi162Scf00608g00922 Petunia axillaris HOM05D004643 ORTHO05D005535 5.3e-32 142.5 229 43.7
Gorai.011G168900 Gossypium raimondii HOM05D004643 ORTHO05D005535 9.1e-32 141.7 338 36.7
COL.COLO4_21561 Corchorus olitorius HOM05D004643 ORTHO05D005535 4.5e-31 139.4 283 37.5
HPP92_023542 Vanilla planifolia HOM05D004643 ORTHO05D005535 4.5e-31 139.4 303 38.3
TWI53G0950 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 5.0e-30 136.0 333 34.8
CDE10G0709 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 1.4e-29 134.4 273 38.5
unitig_60.g25785 Utricularia gibba HOM05D004643 ORTHO05D005535 6.1e-28 129.0 315 33.3
SEGI_27968 Sequoiadendron giganteum HOM05D004643 ORTHO05D005535 8.0e-28 128.6 305 35.4
AT4G14713 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 1.8e-27 127.5 185 44.3
ATR0665G494 Amborella trichopoda HOM05D004643 ORTHO05D005535 5.2e-27 125.9 315 34.6
AL7G41240 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 6.7e-27 125.6 297 34.3
THA.LOC104808573 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 3.3e-26 123.2 289 33.9
Gohir.D08G072800 Gossypium hirsutum HOM05D004643 ORTHO05D005535 7.4e-26 122.1 310 35.8
SMO356G0236 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 1.6e-23 114.4 315 32.4
TWI73G0832 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 5.5e-21 105.9 196 40.8
Ah.11g047360 Amaranthus hybridus HOM05D004643 ORTHO05D005535 1.2e-20 104.8 85 65.9
Lsat_1_v5_gn_5_11760 Lactuca sativa HOM05D004348 ORTHO05D006191 1.2e-20 104.8 87 60.9
Lsat_1_v5_gn_8_161541 Lactuca sativa HOM05D004643 ORTHO05D005535 1.2e-20 104.8 87 60.9
CARHR221170 Cardamine hirsuta HOM05D004643 ORTHO05D005535 1.0e-19 101.7 255 36.1
Hund22704 Selenicereus undatus HOM05D004643 ORTHO05D005535 2.3e-19 100.5 94 58.5
SMO153G0002 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 2.6e-18 97.1 250 32.4
Oeu047217.1 Olea europaea HOM05D004643 ORTHO05D005535 7.5e-18 95.5 133 48.1
Sc13g0004740 Simmondsia chinensis HOM05D004643 ORTHO05D005535 8.2e-17 92.0 163 41.1
SHI00517 Sapria himalayana HOM05D004643 ORTHO05D005535 1.4e-16 91.3 253 31.6
SMO348G0038 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 2.4e-16 90.5 268 29.9
CSS0034684 Camellia sinensis var. sinensis HOM05D004643 ORTHO05D005535 3.1e-16 90.1 95 58.9
CiPaw.01G195600 Carya illinoinensis HOM05D004643 ORTHO05D005535 7.2e-13 79.0 167 38.3
COL.COLO4_09196 Corchorus olitorius HOM05D004643 ORTHO05D005535 1.0e-11 75.1 153 40.5
CBR_g49108 Chara braunii HOM05D000004 ORTHO05D038404 6.8e-11 72.4 56 57.1
arahy.Tifrunner.gnm1.ann1.BEZ7GQ Arachis hypogaea HOM05D001047 ORTHO05D000768 6.3e-09 65.9 155 32.3
arahy.Tifrunner.gnm1.ann1.EFG4M9 Arachis hypogaea HOM05D001047 ORTHO05D000768 1.8e-08 64.3 155 31.6
Glyma.09G071600 Glycine max HOM05D001047 ORTHO05D000768 2.4e-08 63.9 118 36.4
Lalb_Chr08g0232721 Lupinus albus HOM05D001047 ORTHO05D000768 1.2e-07 61.6 148 33.8
Zm00001eb327450 Zea mays HOM05D001047 ORTHO05D000768 1.2e-07 61.6 130 37.7
Medtr5g013530 Medicago truncatula HOM05D001047 ORTHO05D000768 1.3e-06 58.2 120 35.0
Prupe.7G194800 Prunus persica HOM05D001047 ORTHO05D000768 1.3e-06 58.2 142 33.1
Sc18g0002760 Simmondsia chinensis HOM05D001047 ORTHO05D000768 1.3e-06 58.2 135 33.3
Os07g0615200 Oryza sativa ssp. japonica HOM05D001047 ORTHO05D000768 2.3e-06 57.4 118 34.7
Nitab4.5_0004234g0080 Nicotiana tabacum HOM05D001047 ORTHO05D000768 2.9e-06 57.0 118 34.7
GSVIVG01015042001 Vitis vinifera HOM05D001047 ORTHO05D000768 2.9e-06 57.0 146 32.2
BcaC04g19482 Brassica carinata HOM05D001047 ORTHO05D000768 3.8e-06 56.6 117 31.6
C09p55290 Brassica napus HOM05D001047 ORTHO05D000768 3.8e-06 56.6 117 31.6
Glyma.15G179600 Glycine max HOM05D001047 ORTHO05D000768 3.8e-06 56.6 125 36.8
Lj6g0004228 Lotus japonicus HOM05D001047 ORTHO05D000768 3.8e-06 56.6 159 32.1
Lalb_Chr07g0181301 Lupinus albus HOM05D001047 ORTHO05D000768 3.8e-06 56.6 121 33.9
SMO203G0034 Selaginella moellendorffii HOM05D008914 ORTHO05D000768 3.8e-06 56.6 212 28.8
CDE04G1925 Ceratophyllum demersum HOM05D001047 ORTHO05D000768 5.0e-06 56.2 130 32.3
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 5.0e-06 56.2 60 46.7
Ca_02220_v3 Cicer arietinum L. HOM05D001047 ORTHO05D000768 5.0e-06 56.2 120 32.5
SEGI_28730 Sequoiadendron giganteum HOM05D002346 ORTHO05D002452 6.5e-06 55.8 185 30.8
arahy.Tifrunner.gnm1.ann1.0AWF5M Arachis hypogaea HOM05D001047 ORTHO05D000768 8.6e-06 55.5 162 31.5
arahy.Tifrunner.gnm1.ann1.W1F2QM Arachis hypogaea HOM05D001047 ORTHO05D000768 8.6e-06 55.5 162 30.9
Hma1.2p1_0884F.1_g232490 Hydrangea macrophylla HOM05D001047 ORTHO05D000768 8.6e-06 55.5 130 33.1


User provided reference genes

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