Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0005251 Helianthus annuus HOM05D006879 ORTHO05D008452 1.3e-35 152.5 75 100.0
HanXRQChr03g0088981 Helianthus annuus HOM05D006879 ORTHO05D008452 7.2e-31 136.7 74 89.2
HanXRQChr04g0101301 Helianthus annuus HOM05D006879 ORTHO05D008452 2.7e-30 134.8 73 89.0
Lsat_1_v5_gn_6_93360 Lactuca sativa HOM05D006879 ORTHO05D008452 4.5e-25 117.5 74 78.4
Cc10_g12010 Coffea canephora HOM05D006879 ORTHO05D008452 5.9e-25 117.1 74 73.0
Cfa016025 Carpinus fangiana HOM05D006879 ORTHO05D008452 1.7e-24 115.5 69 78.3
CSS0011792 Camellia sinensis var. sinensis HOM05D006879 ORTHO05D008452 3.8e-24 114.4 74 71.6
CiPaw.06G031600 Carya illinoinensis HOM05D006879 ORTHO05D008452 8.5e-24 113.2 72 72.2
Prupe.1G494800 Prunus persica HOM05D006879 ORTHO05D008452 8.5e-24 113.2 74 70.3
Haze_00431 Corylus avellana HOM05D000586 ORTHO05D008452 1.4e-23 112.5 65 80.0
Dinv27305 Davidia involucrata HOM05D006879 ORTHO05D008452 2.5e-23 111.7 73 75.3
Dinv07211 Davidia involucrata HOM05D006879 ORTHO05D008452 3.2e-23 111.3 65 76.9
Hma1.2p1_0054F.1_g031040 Hydrangea macrophylla HOM05D006879 ORTHO05D008452 4.2e-23 110.9 72 73.6
Cpa.g.sc418.6 Carica papaya HOM05D006879 ORTHO05D008452 7.2e-23 110.2 67 73.1
Gohir.A01G189200 Gossypium hirsutum HOM05D006879 ORTHO05D008452 9.4e-23 109.8 73 71.2
Gohir.D01G180300 Gossypium hirsutum HOM05D006879 ORTHO05D008452 9.4e-23 109.8 67 76.1
COL.COLO4_03398 Corchorus olitorius HOM05D006879 ORTHO05D008452 1.2e-22 109.4 81 70.4
QL09p034330 Quercus lobata HOM05D006879 ORTHO05D008452 1.2e-22 109.4 70 71.4
QL09p034374 Quercus lobata HOM05D006879 ORTHO05D008452 1.2e-22 109.4 70 71.4
Thecc.08G126700 Theobroma cacao HOM05D006879 ORTHO05D008452 1.6e-22 109.0 75 69.3
ClCG11G015720 Citrullus lanatus HOM05D006879 ORTHO05D008452 2.1e-22 108.6 64 73.4
ECA240G3722 Erigeron canadensis HOM05D006879 ORTHO05D008452 2.1e-22 108.6 74 71.6
Aqoxy6G00233 Aquilegia oxysepala HOM05D006879 ORTHO05D008452 2.7e-22 108.2 64 76.6
Nn5g28321 Nelumbo nucifera HOM05D006879 ORTHO05D008452 2.7e-22 108.2 64 75.0
Peaxi162Scf00332g00015 Petunia axillaris HOM05D006879 ORTHO05D008452 2.7e-22 108.2 63 79.4
Manes.02G164300 Manihot esculenta HOM05D006879 ORTHO05D008452 4.7e-22 107.5 73 67.1
MELO3C010476.2 Cucumis melo HOM05D006879 ORTHO05D008452 6.1e-22 107.1 62 75.8
Duzib041G0788 Durio zibethinus HOM05D006879 ORTHO05D008452 6.1e-22 107.1 75 69.3
vmacro00838 Vaccinium macrocarpon HOM05D006879 ORTHO05D008452 6.1e-22 107.1 74 68.9
CsaV3_4G028290 Cucumis sativus L. HOM05D006879 ORTHO05D008452 8.0e-22 106.7 64 71.9
PSO528G0112 Papaver somniferum HOM05D006879 ORTHO05D008452 8.0e-22 106.7 72 68.1
Solyc08g067800.3 Solanum lycopersicum HOM05D006879 ORTHO05D008452 8.0e-22 106.7 64 75.0
Sopen08g021740 Solanum pennellii HOM05D006879 ORTHO05D008452 8.0e-22 106.7 64 75.0
Sc02g0005010 Simmondsia chinensis HOM05D006879 ORTHO05D008452 1.8e-21 105.5 76 68.4
TAR628G0734 Trochodendron aralioides HOM05D006879 ORTHO05D008452 1.8e-21 105.5 64 73.4
CAN.G21.5 Capsicum annuum HOM05D006879 ORTHO05D008452 2.3e-21 105.1 65 73.8
PSO170G0506 Papaver somniferum HOM05D006879 ORTHO05D008452 2.3e-21 105.1 72 66.7
Psat5g086200 Pisum sativum HOM05D006879 ORTHO05D008452 3.9e-21 104.4 65 72.3
AL2G37750 Arabidopsis lyrata HOM05D006879 ORTHO05D008452 5.2e-21 104.0 73 63.0
Gorai.002G222300 Gossypium raimondii HOM05D006879 ORTHO05D008452 5.2e-21 104.0 73 67.1
RhsimUnG0092300 Rhododendron simsii HOM05D000586 ORTHO05D008452 5.2e-21 104.0 65 73.8
Aa31LG4G7630 Aethionema arabicum HOM05D006879 ORTHO05D008452 6.7e-21 103.6 67 64.2
Eucgr.F03793 Eucalyptus grandis HOM05D006879 ORTHO05D008452 6.7e-21 103.6 72 65.3
Ciclev10002899m.g Citrus clementina HOM05D006879 ORTHO05D008452 8.8e-21 103.2 74 66.2
Sed0023358 Sechium edule HOM05D006879 ORTHO05D008452 8.8e-21 103.2 69 69.6
TPR.G20905 Trifolium pratense HOM05D006879 ORTHO05D008452 8.8e-21 103.2 62 75.8
Ca_28182_v3 Cicer arietinum L. HOM05D006879 ORTHO05D008452 1.1e-20 102.8 60 78.3
Medtr3g088570 Medicago truncatula HOM05D006879 ORTHO05D008452 1.1e-20 102.8 63 74.6
Lj1g0005641 Lotus japonicus HOM05D006879 ORTHO05D008452 1.5e-20 102.4 76 68.4
FvH4_2g27080 Fragaria vesca HOM05D006879 ORTHO05D008452 2.0e-20 102.1 65 69.2
FAN20G0093 Fragaria x ananassa HOM05D006879 ORTHO05D008452 2.0e-20 102.1 64 70.3
Potri.005G178501 Populus trichocarpa HOM05D006879 ORTHO05D008452 2.0e-20 102.1 73 63.0
Hund17297 Selenicereus undatus HOM05D006879 ORTHO05D008452 2.0e-20 102.1 70 70.0
AT1G77540 Arabidopsis thaliana HOM05D006879 ORTHO05D008452 2.6e-20 101.7 73 61.6
Carub.0002s2444 Capsella rubella HOM05D006879 ORTHO05D008452 3.3e-20 101.3 66 69.7
Nitab4.5_0004334g0040 Nicotiana tabacum HOM05D006879 ORTHO05D008452 3.3e-20 101.3 70 71.4
Actinidia03466 Actinidia chinensis HOM05D006879 ORTHO05D008452 4.4e-20 100.9 70 65.7
AUR62014329 Chenopodium quinoa HOM05D006879 ORTHO05D008452 4.4e-20 100.9 80 63.8
Thhalv10019334m.g Eutrema salsugineum HOM05D006879 ORTHO05D008452 4.4e-20 100.9 73 61.6
MD15G1347100 Malus domestica HOM05D006879 ORTHO05D008452 4.4e-20 100.9 73 65.8
RcHm_v2.0_Chr6g0295961 Rosa chinensis HOM05D006879 ORTHO05D008452 5.7e-20 100.5 74 63.5
TWI32G0821 Tripterygium wilfordii HOM05D006879 ORTHO05D008452 5.7e-20 100.5 66 69.7
FAN24G0949 Fragaria x ananassa HOM05D006879 ORTHO05D008452 7.4e-20 100.1 65 67.7
PGR083G2398 Punica granatum HOM05D006879 ORTHO05D008452 7.4e-20 100.1 75 66.7
ATR0584G146 Amborella trichopoda HOM05D006879 ORTHO05D008452 9.7e-20 99.8 63 68.3
Nitab4.5_0005583g0080 Nicotiana tabacum HOM05D006879 ORTHO05D008452 1.7e-19 99.0 74 68.9
arahy.Tifrunner.gnm1.ann1.0SZ2NS Arachis hypogaea HOM05D006879 ORTHO05D008452 2.2e-19 98.6 62 74.2
arahy.Tifrunner.gnm1.ann1.61DA9N Arachis hypogaea HOM05D006879 ORTHO05D008452 2.2e-19 98.6 62 74.2
arahy.Tifrunner.gnm1.ann1.GV74HV Arachis hypogaea HOM05D006879 ORTHO05D008452 2.2e-19 98.6 62 74.2
CDE07G0981 Ceratophyllum demersum HOM05D006879 ORTHO05D008452 2.2e-19 98.6 65 67.7
FAN15G3590 Fragaria x ananassa HOM05D006879 ORTHO05D008452 2.2e-19 98.6 65 67.7
Lalb_Chr11g0066061 Lupinus albus HOM05D006879 ORTHO05D008452 2.2e-19 98.6 62 71.0
Sp5g32720 Schrenkiella parvula HOM05D006879 ORTHO05D008452 2.2e-19 98.6 73 60.3
CARHR071070 Cardamine hirsuta HOM05D006879 ORTHO05D008452 2.8e-19 98.2 71 62.0
EL10Ac1g01022 Beta vulgaris HOM05D006879 ORTHO05D008452 4.8e-19 97.4 66 69.7
BcaB02g07111 Brassica carinata HOM05D006879 ORTHO05D008452 6.3e-19 97.1 74 63.5
Phvul.008G160300 Phaseolus vulgaris HOM05D006879 ORTHO05D008452 8.2e-19 96.7 60 75.0
VMungo0647G0471 Vigna mungo HOM05D006879 ORTHO05D008452 8.2e-19 96.7 60 75.0
AUR62019072 Chenopodium quinoa HOM05D006879 ORTHO05D008452 1.4e-18 95.9 72 61.1
Aa31LG7G5750 Aethionema arabicum HOM05D006879 ORTHO05D008452 4.1e-18 94.4 67 62.7
C06p31190 Brassica napus HOM05D006879 ORTHO05D008452 4.1e-18 94.4 74 62.2
BraA07t30441Z Brassica rapa HOM05D006879 ORTHO05D008452 4.1e-18 94.4 74 60.8
MSTRG.25382 Avicennia marina HOM05D006879 ORTHO05D008452 5.3e-18 94.0 65 67.7
BcaC08g45472 Brassica carinata HOM05D006879 ORTHO05D008452 5.3e-18 94.0 74 60.8
BolC6t38260H Brassica oleracea HOM05D006879 ORTHO05D008452 5.3e-18 94.0 74 60.8
Atru.chr13.1490 Acer truncatum HOM05D006879 ORTHO05D008452 7.0e-18 93.6 76 57.9
Glyma.14G151700 Glycine max HOM05D006879 ORTHO05D008452 7.0e-18 93.6 81 60.5
A07p27940 Brassica napus HOM05D006879 ORTHO05D008452 1.2e-17 92.8 74 59.5
Migut.C01128 Erythranthe guttata HOM05D006879 ORTHO05D008452 1.6e-17 92.4 67 68.7
THA.LOC104813659 Tarenaya hassleriana HOM05D006879 ORTHO05D008452 1.6e-17 92.4 64 70.3
BcaC05g26099 Brassica carinata HOM05D006879 ORTHO05D008452 3.5e-17 91.3 67 61.2
C05p20780 Brassica napus HOM05D006879 ORTHO05D008452 3.5e-17 91.3 67 61.2
CANSAT56G2034 Cannabis sativa HOM05D006879 ORTHO05D008452 3.5e-17 91.3 78 60.3
AL1G34970 Arabidopsis lyrata HOM05D006879 ORTHO05D008452 4.5e-17 90.9 66 62.1
Ah.05g171050 Amaranthus hybridus HOM05D006879 ORTHO05D008452 5.9e-17 90.5 74 62.2
BolC5t30777H Brassica oleracea HOM05D006879 ORTHO05D008452 5.9e-17 90.5 67 61.2
AT1G21770 Arabidopsis thaliana HOM05D006879 ORTHO05D008452 7.7e-17 90.1 68 61.8
BcaB07g32176 Brassica carinata HOM05D006879 ORTHO05D008452 1.7e-16 89.0 67 59.7
Thhalv10009164m.g Eutrema salsugineum HOM05D006879 ORTHO05D008452 2.2e-16 88.6 64 60.9
A06p17880 Brassica napus HOM05D006879 ORTHO05D008452 3.8e-16 87.8 67 59.7
BraA06t24878Z Brassica rapa HOM05D006879 ORTHO05D008452 3.8e-16 87.8 67 59.7
Carub.0001s2123 Capsella rubella HOM05D006879 ORTHO05D008452 6.5e-16 87.0 72 58.3
Sp1g19330 Schrenkiella parvula HOM05D006879 ORTHO05D008452 5.5e-15 84.0 64 59.4
SGA_v2.0_scaffold52G18964 Striga asiatica HOM05D006879 ORTHO05D008452 7.2e-15 83.6 70 62.9
CAN.G21.4 Capsicum annuum HOM05D006879 ORTHO05D008452 9.4e-15 83.2 68 54.4
Eucgr.H03925 Eucalyptus grandis HOM05D006879 ORTHO05D008452 1.8e-13 79.0 58 60.3
SEGI_19819 Sequoiadendron giganteum HOM05D006879 ORTHO05D008452 2.3e-13 78.6 71 56.3
Zm00001eb082730 Zea mays HOM05D006879 ORTHO05D008452 1.6e-09 65.9 69 47.8
Pp3c12_9490 Physcomitrium patens HOM05D006879 ORTHO05D008452 7.7e-09 63.5 75 44.0
GSVIVG01008857001 Vitis vinifera HOM05D006879 ORTHO05D008452 6.5e-08 60.5 31 87.1
HanXRQChr09g0244451 Helianthus annuus HOM05D006879 ORTHO05D008452 1.5e-07 59.3 31 87.1
Oeu059437.1 Olea europaea HOM05D006879 ORTHO05D008452 1.6e-06 55.8 31 80.6
Eucgr.H03927 Eucalyptus grandis HOM05D006879 ORTHO05D008452 3.6e-06 54.7 72 41.7
SMO146G0286 Selaginella moellendorffii HOM05D006879 ORTHO05D008452 6.1e-06 53.9 64 42.2
Mapoly0075s0062 Marchantia polymorpha HOM05D006879 ORTHO05D008452 8.0e-06 53.5 86 34.9


User provided reference genes

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