Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0004771 Helianthus annuus HOM05D004987 ORTHO05D005960 4.1e-273 944.1 471 100.0
ECA248G1395 Erigeron canadensis HOM05D004987 ORTHO05D005960 1.4e-244 849.4 478 88.9
Lsat_1_v5_gn_6_62021 Lactuca sativa HOM05D004987 ORTHO05D005960 6.8e-244 847.0 474 88.8
Lsat_1_v5_gn_0_32381 Lactuca sativa HOM05D004987 ORTHO05D005960 2.0e-224 782.3 457 86.4
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla HOM05D004987 ORTHO05D005960 6.4e-218 760.8 481 77.5
Dinv01708 Davidia involucrata HOM05D004987 ORTHO05D005960 3.6e-213 745.0 490 75.1
TAR627G0360 Trochodendron aralioides HOM05D004987 ORTHO05D005960 1.4e-212 743.0 484 75.4
CiPaw.09G105700 Carya illinoinensis HOM05D004987 ORTHO05D005960 5.2e-212 741.1 480 74.8
CANSAT01G2438 Cannabis sativa HOM05D004987 ORTHO05D005960 1.5e-211 739.6 480 73.3
QL05p068327 Quercus lobata HOM05D004987 ORTHO05D005960 7.5e-211 737.3 479 74.3
QL05p068818 Quercus lobata HOM05D004987 ORTHO05D005960 7.5e-211 737.3 479 74.3
GSVIVG01007214001 Vitis vinifera HOM05D004987 ORTHO05D005960 7.5e-211 737.3 481 75.1
Lsat_1_v5_gn_6_62041 Lactuca sativa HOM05D004987 ORTHO05D005960 1.4e-209 733.0 472 78.4
RcHm_v2.0_Chr5g0000801 Rosa chinensis HOM05D004987 ORTHO05D005960 1.4e-209 733.0 479 75.8
Solyc08g065990.3 Solanum lycopersicum HOM05D004987 ORTHO05D005960 1.4e-209 733.0 474 75.5
CiPaw.10G079900 Carya illinoinensis HOM05D004987 ORTHO05D005960 2.4e-209 732.3 480 74.4
FvH4_3g00590 Fragaria vesca HOM05D004987 ORTHO05D005960 3.2e-209 731.9 479 75.6
Sopen08g019660 Solanum pennellii HOM05D004987 ORTHO05D005960 3.2e-209 731.9 474 75.5
PGSC0003DMG400025463 Solanum tuberosum HOM05D004987 ORTHO05D005960 2.7e-208 728.8 475 76.0
Migut.M01428 Erythranthe guttata HOM05D004987 ORTHO05D005960 3.5e-208 728.4 475 75.2
Sed0000076 Sechium edule HOM05D004987 ORTHO05D005960 3.5e-208 728.4 480 73.5
CsaV3_1G015810 Cucumis sativus L. HOM05D004987 ORTHO05D005960 4.6e-208 728.0 481 73.6
FAN25G3815 Fragaria x ananassa HOM05D004987 ORTHO05D005960 4.6e-208 728.0 479 74.9
Prupe.4G007100 Prunus persica HOM05D004987 ORTHO05D005960 6.0e-208 727.6 480 73.5
CAN.G9.5 Capsicum annuum HOM05D004987 ORTHO05D005960 1.3e-207 726.5 474 74.9
Nitab4.5_0000318g0050 Nicotiana tabacum HOM05D004987 ORTHO05D005960 1.7e-207 726.1 475 75.2
ClCG01G010690 Citrullus lanatus HOM05D004987 ORTHO05D005960 2.3e-207 725.7 481 73.0
MD00G1058500 Malus domestica HOM05D004987 ORTHO05D005960 2.3e-207 725.7 481 75.1
CSS0019037 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 1.5e-206 723.0 476 73.3
TAR626G0553 Trochodendron aralioides HOM05D004987 ORTHO05D005960 1.5e-206 723.0 483 73.3
Haze_06979 Corylus avellana HOM05D004987 ORTHO05D005960 2.5e-206 722.2 507 70.6
MSTRG.13111 Avicennia marina HOM05D004987 ORTHO05D005960 3.3e-206 721.8 474 74.9
Ciclev10015100m.g Citrus clementina HOM05D004987 ORTHO05D005960 3.3e-206 721.8 481 72.8
Cc09_g00600 Coffea canephora HOM05D004987 ORTHO05D005960 5.6e-206 721.1 488 73.6
CSS0028023 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 1.2e-205 719.9 478 73.2
Peaxi162Scf00488g00925 Petunia axillaris HOM05D004987 ORTHO05D005960 2.1e-205 719.2 476 72.9
Thecc.06G237200 Theobroma cacao HOM05D004987 ORTHO05D005960 1.1e-204 716.8 481 71.9
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea HOM05D004987 ORTHO05D005960 2.4e-204 715.7 485 73.0
AUR62018393 Chenopodium quinoa HOM05D004987 ORTHO05D005960 4.0e-204 714.9 483 72.3
TWI38G0401 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 8.9e-204 713.8 475 72.8
CSS0011246 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 2.0e-203 712.6 476 72.7
Atru.chr3.1439 Acer truncatum HOM05D004987 ORTHO05D005960 2.6e-203 712.2 481 72.6
EL10Ac3g07283 Beta vulgaris HOM05D004987 ORTHO05D005960 2.6e-203 712.2 482 72.0
Duzib235G0100 Durio zibethinus HOM05D004987 ORTHO05D005960 3.4e-203 711.8 481 71.9
Manes.09G081692 Manihot esculenta HOM05D004987 ORTHO05D005960 3.4e-203 711.8 480 72.3
Actinidia26840 Actinidia chinensis HOM05D004987 ORTHO05D005960 4.4e-203 711.4 482 71.6
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea HOM05D004987 ORTHO05D005960 5.8e-203 711.1 485 72.8
Ah.02g126930 Amaranthus hybridus HOM05D004987 ORTHO05D005960 7.6e-203 710.7 478 72.0
Potri.006G017000 Populus trichocarpa HOM05D004987 ORTHO05D005960 7.6e-203 710.7 479 71.0
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea HOM05D004987 ORTHO05D005960 1.3e-202 709.9 497 71.4
SalBow8G4301 Salvia bowleyana HOM05D004987 ORTHO05D005960 1.3e-202 709.9 475 73.3
Lj2C259G8 Lonicera japonica HOM05D004987 ORTHO05D005960 1.7e-202 709.5 477 74.0
Glyma.07G266900 Glycine max HOM05D004987 ORTHO05D005960 3.8e-202 708.4 481 72.1
Lj4g0022097 Lotus japonicus HOM05D004987 ORTHO05D005960 4.9e-202 708.0 481 71.9
Lalb_Chr20g0119411 Lupinus albus HOM05D004987 ORTHO05D005960 6.4e-202 707.6 481 72.1
Psat5g004720 Pisum sativum HOM05D004987 ORTHO05D005960 6.4e-202 707.6 481 71.9
Gohir.A06G204500 Gossypium hirsutum HOM05D004987 ORTHO05D005960 1.1e-201 706.8 481 71.1
MSTRG.14600 Avicennia marina HOM05D004987 ORTHO05D005960 1.4e-201 706.4 474 72.8
Oeu030104.1 Olea europaea HOM05D004987 ORTHO05D005960 1.9e-201 706.1 474 73.6
Nn1g07472 Nelumbo nucifera HOM05D004987 ORTHO05D005960 3.2e-201 705.3 481 71.3
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 4.1e-201 704.9 481 71.7
DCAR_014269 Daucus carota HOM05D004987 ORTHO05D005960 5.4e-201 704.5 479 72.4
Gorai.010G249200 Gossypium raimondii HOM05D004987 ORTHO05D005960 2.7e-200 702.2 481 70.7
SGA_v2.0_scaffold54G19512 Striga asiatica HOM05D004987 ORTHO05D005960 2.7e-200 702.2 474 72.6
Glyma.17G007300 Glycine max HOM05D004987 ORTHO05D005960 3.5e-200 701.8 481 71.9
Ca_15341_v3 Cicer arietinum L. HOM05D004987 ORTHO05D005960 6.0e-200 701.0 481 71.7
Phvul.003G085301 Phaseolus vulgaris HOM05D004987 ORTHO05D005960 7.8e-200 700.7 481 71.5
Gohir.D06G217000 Gossypium hirsutum HOM05D004987 ORTHO05D005960 1.3e-199 699.9 481 70.7
Medtr3g117360 Medicago truncatula HOM05D004987 ORTHO05D005960 1.7e-199 699.5 481 71.1
SGA_v2.0_scaffold111G31506 Striga asiatica HOM05D004987 ORTHO05D005960 6.6e-199 697.6 494 70.0
vmacro03626 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 6.6e-199 697.6 484 71.1
Aa31LG2G12480 Aethionema arabicum HOM05D004987 ORTHO05D005960 4.3e-198 694.9 475 69.9
MBI19_g25589_MAGBIO Magnolia biondii HOM05D004987 ORTHO05D005960 9.6e-198 693.7 482 70.5
Sp7g14970 Schrenkiella parvula HOM05D004987 ORTHO05D005960 2.4e-196 689.1 473 70.4
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea HOM05D004987 ORTHO05D005960 4.0e-196 688.3 518 67.8
A01p21160 Brassica napus HOM05D004987 ORTHO05D005960 6.9e-196 687.6 473 70.6
C01p26430 Brassica napus HOM05D004987 ORTHO05D005960 6.9e-196 687.6 473 70.8
BcaNung00197 Brassica carinata HOM05D004987 ORTHO05D005960 1.2e-195 686.8 473 70.4
AT4G16440 Arabidopsis thaliana HOM05D004987 ORTHO05D005960 2.6e-195 685.6 478 69.5
PGR004G2886 Punica granatum HOM05D004987 ORTHO05D005960 3.4e-195 685.3 484 68.2
Thhalv10025117m.g Eutrema salsugineum HOM05D004987 ORTHO05D005960 4.4e-195 684.9 473 69.8
Sc13g0000910 Simmondsia chinensis HOM05D004987 ORTHO05D005960 5.8e-195 684.5 438 74.4
Carub.0007s2509 Capsella rubella HOM05D004987 ORTHO05D005960 7.6e-195 684.1 476 69.3
AL7G38570 Arabidopsis lyrata HOM05D004987 ORTHO05D005960 9.9e-195 683.7 478 69.5
BcaC09g50343 Brassica carinata HOM05D004987 ORTHO05D005960 3.8e-194 681.8 473 70.4
BolC1t02590H Brassica oleracea HOM05D004987 ORTHO05D005960 3.8e-194 681.8 473 70.4
unitig_749.g13618 Utricularia gibba HOM05D004987 ORTHO05D005960 8.4e-194 680.6 474 70.5
Oeu057036.1 Olea europaea HOM05D004987 ORTHO05D005960 1.4e-193 679.9 474 71.7
BraA01t02026Z Brassica rapa HOM05D004987 ORTHO05D005960 1.2e-192 676.8 497 67.6
Nitab4.5_0002021g0020 Nicotiana tabacum HOM05D004987 ORTHO05D005960 2.1e-192 676.0 476 71.6
Aqoxy5G03428 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 7.8e-192 674.1 507 65.9
CDE07G0546 Ceratophyllum demersum HOM05D004987 ORTHO05D005960 1.7e-191 672.9 475 69.1
Rhsim13G0142900 Rhododendron simsii HOM05D004987 ORTHO05D005960 2.5e-190 669.1 455 71.6
Medtr4g062080 Medicago truncatula HOM05D004987 ORTHO05D005960 3.6e-189 665.2 483 67.9
CARHR222790 Cardamine hirsuta HOM05D004987 ORTHO05D005960 8.1e-189 664.1 479 66.6
PSO017G3064 Papaver somniferum HOM05D004987 ORTHO05D005960 2.4e-188 662.5 487 67.8
ATR0594G143 Amborella trichopoda HOM05D004987 ORTHO05D005960 5.8e-187 657.9 488 66.6
Os03g0748700 Oryza sativa ssp. japonica HOM05D004987 ORTHO05D005960 2.9e-186 655.6 473 66.8
MELO3C025535.2 Cucumis melo HOM05D004987 ORTHO05D005960 6.4e-186 654.4 415 74.7
Zm00001eb214910 Zea mays HOM05D004987 ORTHO05D005960 1.2e-184 650.2 471 65.4
PSO675G1563 Papaver somniferum HOM05D004987 ORTHO05D005960 3.5e-184 648.7 486 66.5
Sabra16G0013000 Salix brachista HOM05D004987 ORTHO05D005960 1.8e-183 646.4 567 58.6
Zm00001eb057200 Zea mays HOM05D004987 ORTHO05D005960 6.7e-183 644.4 474 65.6
TPR.G32192 Trifolium pratense HOM05D004987 ORTHO05D005960 6.2e-181 637.9 430 71.6
SHI24440 Sapria himalayana HOM05D004987 ORTHO05D005960 1.4e-177 626.7 491 64.0
Eucgr.D01441 Eucalyptus grandis HOM05D004987 ORTHO05D005960 2.4e-177 625.9 432 70.8
AUR62030265 Chenopodium quinoa HOM05D004987 ORTHO05D005960 1.1e-172 610.5 415 70.6
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 1.4e-172 610.1 520 60.8
Cc10_g02370 Coffea canephora HOM05D004987 ORTHO05D005960 8.4e-170 600.9 552 59.4
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis HOM05D004987 ORTHO05D005960 3.3e-166 589.0 487 59.3
SMO356G0034 Selaginella moellendorffii HOM05D004987 ORTHO05D005960 1.6e-165 586.6 470 61.3
Lj2g0000431 Lotus japonicus HOM05D004987 ORTHO05D005960 2.8e-165 585.9 483 62.3
Mapoly0020s0065 Marchantia polymorpha HOM05D004987 ORTHO05D005960 3.7e-165 585.5 491 60.1
MD10G1336400 Malus domestica HOM05D004987 ORTHO05D005960 6.5e-162 574.7 423 68.8
Pp3c6_16630 Physcomitrium patens HOM05D004987 ORTHO05D005960 3.3e-158 562.4 476 57.4
vmacro23178 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 1.8e-151 540.0 412 65.5
CsaV3_UNG059470 Cucumis sativus L. HOM05D004987 ORTHO05D005960 1.6e-139 500.4 489 55.8
Potri.016G008700 Populus trichocarpa HOM05D004987 ORTHO05D005960 1.6e-139 500.4 355 70.1
Cpa.g.sc27.253 Carica papaya HOM05D004987 ORTHO05D005960 1.1e-132 477.6 483 53.4
Lsat_1_v5_gn_6_62060 Lactuca sativa HOM05D004987 ORTHO05D005960 5.6e-105 385.6 211 92.9
Cre03.g200550 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 1.0e-98 364.8 598 38.1
MCO07G565 Micromonas commoda HOM05D004987 ORTHO05D005960 2.5e-97 360.1 526 42.2
SEGI_15851 Sequoiadendron giganteum HOM05D004987 ORTHO05D005960 2.0e-94 350.5 253 62.5
HPP92_013953 Vanilla planifolia HOM05D004987 ORTHO05D005960 7.1e-92 342.0 250 68.8
PRCOL_00000051 Prasinoderma coloniale HOM05D004987 ORTHO05D005960 2.6e-78 297.0 544 37.3
Ciclev10027102m.g Citrus clementina HOM05D004987 ORTHO05D005960 7.6e-78 295.4 182 70.9
AagrBONN_evm.TU.Sc2ySwM_368.3306 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.6e-75 287.7 210 64.3
ATR0751G100 Amborella trichopoda HOM05D004987 ORTHO05D005960 9.0e-71 271.9 255 55.3
FAN21G3552 Fragaria x ananassa HOM05D004987 ORTHO05D005960 2.6e-70 270.4 184 76.6
Atru.chr1.2336 Acer truncatum HOM05D004987 ORTHO05D005960 2.9e-69 266.9 386 44.8
Ciclev10004004m.g Citrus clementina HOM05D004987 ORTHO05D005960 4.0e-63 246.5 177 62.7
Cfa026410 Carpinus fangiana HOM05D004987 ORTHO05D005960 1.1e-57 228.4 475 35.6
TWI38G1931 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 1.9e-57 227.6 260 47.3
arahy.Tifrunner.gnm1.ann1.24PAJQ Arachis hypogaea HOM05D004987 ORTHO05D005960 5.1e-50 203.0 421 35.9
Aqoxy4G02991 Aquilegia oxysepala HOM05D000252 ORTHO05D000307 6.3e-48 196.1 171 58.5
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 2.9e-45 187.2 370 33.8
Cre03.g199800 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 3.0e-42 177.2 484 28.3
Cre09.g396600 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 2.0e-41 174.5 482 28.6
arahy.Tifrunner.gnm1.ann1.4D4U0P Arachis hypogaea HOM05D004987 ORTHO05D005960 4.7e-35 153.3 212 45.8
Aqoxy6G02697 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 1.5e-33 148.3 219 39.7
arahy.Tifrunner.gnm1.ann1.GKV1XW Arachis hypogaea HOM05D004987 ORTHO05D005960 1.0e-18 99.0 185 40.5
AagrBONN_evm.TU.Sc2ySwM_368.1145 Anthoceros agrestis HOM05D004987 ORTHO05D005960 9.1e-15 85.9 106 43.4
GSVIVG01005416001 Vitis vinifera HOM05D004987 ORTHO05D005960 2.7e-14 84.3 67 70.1
MELO3C000413.2 Cucumis melo HOM05D004987 ORTHO05D005960 2.9e-13 80.9 67 65.7
arahy.Tifrunner.gnm1.ann1.YI5A3W Arachis hypogaea HOM05D004987 ORTHO05D005960 3.6e-11 73.9 71 52.1
TPR.G35318 Trifolium pratense HOM05D004987 ORTHO05D005960 4.7e-11 73.6 67 56.7
PSO339G0319 Papaver somniferum HOM05D004987 ORTHO05D005960 5.7e-09 66.6 69 50.7
PSO832G0476 Papaver somniferum HOM05D000145 ORTHO05D001435 7.5e-09 66.2 68 51.5
arahy.Tifrunner.gnm1.ann1.028TPL Arachis hypogaea HOM05D004987 ORTHO05D005960 8.3e-08 62.8 63 57.1
arahy.Tifrunner.gnm1.ann1.N1GFR4 Arachis hypogaea HOM05D004987 ORTHO05D005960 1.1e-07 62.4 51 54.9
AagrBONN_evm.TU.Sc2ySwM_368.1144 Anthoceros agrestis HOM05D004987 ORTHO05D005960 2.7e-06 57.8 84 45.2


User provided reference genes

Program Settings