Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0004761 Helianthus annuus HOM05D002882 ORTHO05D003127 2.0e-23 111.7 62 100.0
Solyc11g012600.3 Solanum lycopersicum HOM05D002882 ORTHO05D003127 4.7e-12 73.9 62 62.9
Sopen11g007330 Solanum pennellii HOM05D002882 ORTHO05D003127 4.7e-12 73.9 62 62.9
PGSC0003DMG400013293 Solanum tuberosum HOM05D002232 ORTHO05D002323 3.1e-11 71.2 62 59.7
CAN.G696.9 Capsicum annuum HOM05D002882 ORTHO05D003127 2.0e-10 68.6 60 56.7
Oeu047048.1 Olea europaea HOM05D002882 ORTHO05D003127 3.4e-10 67.8 63 61.9
SalBow8G3098 Salvia bowleyana HOM05D002882 ORTHO05D003127 5.8e-10 67.0 62 54.8
Migut.M01429 Erythranthe guttata HOM05D002882 ORTHO05D003127 7.5e-10 66.6 60 61.7
Solyc04g014840.3 Solanum lycopersicum HOM05D002882 ORTHO05D003127 6.4e-09 63.5 63 55.6
Sopen04g006970 Solanum pennellii HOM05D002882 ORTHO05D003127 6.4e-09 63.5 63 55.6
DCAR_030855 Daucus carota HOM05D002882 ORTHO05D003127 8.3e-09 63.2 60 56.7
QL05p068309 Quercus lobata HOM05D002882 ORTHO05D003127 8.3e-09 63.2 65 60.0
CANSAT56G1012 Cannabis sativa HOM05D002882 ORTHO05D003127 1.4e-08 62.4 65 61.5
CSS0005957 Camellia sinensis var. sinensis HOM05D002882 ORTHO05D003127 1.9e-08 62.0 60 60.0
CSS0019645 Camellia sinensis var. sinensis HOM05D002882 ORTHO05D003127 1.9e-08 62.0 60 60.0
CSS0030963 Camellia sinensis var. sinensis HOM05D002882 ORTHO05D003127 1.9e-08 62.0 60 60.0
CiPaw.09G105800 Carya illinoinensis HOM05D002882 ORTHO05D003127 2.4e-08 61.6 65 60.0
CDE04G3034 Ceratophyllum demersum HOM05D002882 ORTHO05D003127 4.1e-08 60.8 65 61.5
Dinv04408 Davidia involucrata HOM05D002882 ORTHO05D003127 4.1e-08 60.8 65 60.0
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 4.1e-08 60.8 64 60.9
ECA246G4694 Erigeron canadensis HOM05D002882 ORTHO05D003127 5.4e-08 60.5 65 60.0
Lalb_Chr13g0294401 Lupinus albus HOM05D002882 ORTHO05D003127 5.4e-08 60.5 66 59.1
PSO541G3989 Papaver somniferum HOM05D002882 ORTHO05D003127 5.4e-08 60.5 65 56.9
PSO675G6750 Papaver somniferum HOM05D002882 ORTHO05D003127 5.4e-08 60.5 65 56.9
Lalb_Chr07g0187071 Lupinus albus HOM05D002882 ORTHO05D003127 7.1e-08 60.1 66 57.6
HPP92_007896 Vanilla planifolia HOM05D002882 ORTHO05D003127 7.1e-08 60.1 65 56.9
HanXRQChr09g0273281 Helianthus annuus HOM05D002882 ORTHO05D003127 9.2e-08 59.7 65 56.9
Nn1g07474 Nelumbo nucifera HOM05D002882 ORTHO05D003127 9.2e-08 59.7 65 58.5
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 9.2e-08 59.7 61 55.7
Gorai.002G182300 Gossypium raimondii HOM05D002882 ORTHO05D003127 1.2e-07 59.3 66 59.1
Oeu005006.1 Olea europaea HOM05D002882 ORTHO05D003127 1.2e-07 59.3 66 56.1
TWI75G1132 Tripterygium wilfordii HOM05D002882 ORTHO05D003127 1.2e-07 59.3 66 59.1
CiPaw.06G103700 Carya illinoinensis HOM05D002882 ORTHO05D003127 1.6e-07 58.9 66 57.6
Potri.006G017100 Populus trichocarpa HOM05D002882 ORTHO05D003127 1.6e-07 58.9 65 60.0
CSS0003576 Camellia sinensis var. sinensis HOM05D002882 ORTHO05D003127 2.1e-07 58.5 65 55.4
CDE07G2053 Ceratophyllum demersum HOM05D002882 ORTHO05D003127 2.1e-07 58.5 65 58.5
Gohir.A12G149100 Gossypium hirsutum HOM05D002882 ORTHO05D003127 2.1e-07 58.5 66 59.1
Gohir.D01G146600 Gossypium hirsutum HOM05D002882 ORTHO05D003127 2.1e-07 58.5 66 57.6
Lj4g0011609 Lotus japonicus HOM05D002882 ORTHO05D003127 2.1e-07 58.5 66 57.6
MBI19_g07167_MAGBIO Magnolia biondii HOM05D002882 ORTHO05D003127 2.1e-07 58.5 65 55.4
Nn3g16443 Nelumbo nucifera HOM05D002882 ORTHO05D003127 2.1e-07 58.5 65 56.9
BcaB03g12073 Brassica carinata HOM05D002882 ORTHO05D003127 2.7e-07 58.2 66 56.1
BcaC01g01622 Brassica carinata HOM05D002882 ORTHO05D003127 2.7e-07 58.2 66 56.1
BcaC05g26548 Brassica carinata HOM05D002882 ORTHO05D003127 2.7e-07 58.2 66 56.1
A07p11910 Brassica napus HOM05D002882 ORTHO05D003127 2.7e-07 58.2 66 56.1
A09p38600 Brassica napus HOM05D002882 ORTHO05D003127 2.7e-07 58.2 66 56.1
C05p26050 Brassica napus HOM05D002882 ORTHO05D003127 2.7e-07 58.2 66 56.1
C07p17860 Brassica napus HOM05D002882 ORTHO05D003127 2.7e-07 58.2 66 56.1
BolC5t31324H Brassica oleracea HOM05D002882 ORTHO05D003127 2.7e-07 58.2 66 56.1
BolC7t42292H Brassica oleracea HOM05D002882 ORTHO05D003127 2.7e-07 58.2 66 56.1
Thhalv10009274m.g Eutrema salsugineum HOM05D002882 ORTHO05D003127 2.7e-07 58.2 66 56.1
Glyma.05G148000 Glycine max HOM05D002882 ORTHO05D003127 2.7e-07 58.2 66 57.6
Manes.13G010602 Manihot esculenta HOM05D002882 ORTHO05D003127 2.7e-07 58.2 66 57.6
Oeu004455.1 Olea europaea HOM05D002882 ORTHO05D003127 2.7e-07 58.2 66 57.6
Prupe.1G224500 Prunus persica HOM05D002882 ORTHO05D003127 2.7e-07 58.2 66 57.6
THA.LOC104807127 Tarenaya hassleriana HOM05D002882 ORTHO05D003127 2.7e-07 58.2 66 57.6
THA.LOC104807522 Tarenaya hassleriana HOM05D002882 ORTHO05D003127 2.7e-07 58.2 65 56.9
GSVIVG01010500001 Vitis vinifera HOM05D000160 ORTHO05D000496 2.7e-07 58.2 65 56.9
CsaV3_6G007080 Cucumis sativus L. HOM05D002882 ORTHO05D003127 3.5e-07 57.8 65 58.5
Duzib251G0063 Durio zibethinus HOM05D002882 ORTHO05D003127 3.5e-07 57.8 66 56.1
Thhalv10009276m.g Eutrema salsugineum HOM05D002882 ORTHO05D003127 3.5e-07 57.8 66 54.5
Gohir.A03G125300 Gossypium hirsutum HOM05D002882 ORTHO05D003127 3.5e-07 57.8 66 56.1
Gohir.D02G148066 Gossypium hirsutum HOM05D002882 ORTHO05D003127 3.5e-07 57.8 66 56.1
Gorai.005G165800 Gossypium raimondii HOM05D002882 ORTHO05D003127 3.5e-07 57.8 66 56.1
HanXRQChr08g0236801 Helianthus annuus HOM05D002882 ORTHO05D003127 3.5e-07 57.8 65 55.4
Thecc.02G206200 Theobroma cacao HOM05D002882 ORTHO05D003127 3.5e-07 57.8 66 56.1
PSO017G4765 Papaver somniferum HOM05D002882 ORTHO05D003127 4.6e-07 57.4 65 55.4
PSO478G1706 Papaver somniferum HOM05D002882 ORTHO05D003127 4.6e-07 57.4 65 55.4
Solyc05g015530.3 Solanum lycopersicum HOM05D002882 ORTHO05D003127 4.6e-07 57.4 65 55.4
Sopen12g034980 Solanum pennellii HOM05D002882 ORTHO05D003127 4.6e-07 57.4 65 55.4
PGSC0003DMG402034311 Solanum tuberosum HOM05D002882 ORTHO05D003127 4.6e-07 57.4 65 55.4
Zm00001eb166200 Zea mays HOM05D002882 ORTHO05D003127 4.6e-07 57.4 67 58.2
Aqoxy5G03331 Aquilegia oxysepala HOM05D002882 ORTHO05D003127 6.0e-07 57.0 65 53.8
BcaC05g26741 Brassica carinata HOM05D002882 ORTHO05D003127 6.0e-07 57.0 65 55.4
Migut.K00953 Erythranthe guttata HOM05D002882 ORTHO05D003127 6.0e-07 57.0 65 53.8
Gohir.D12G153000 Gossypium hirsutum HOM05D002882 ORTHO05D003127 6.0e-07 57.0 66 57.6
Gorai.008G165500 Gossypium raimondii HOM05D002882 ORTHO05D003127 6.0e-07 57.0 66 57.6
Lsat_1_v5_gn_3_30780 Lactuca sativa HOM05D002882 ORTHO05D003127 6.0e-07 57.0 66 56.1
MD13G1120700 Malus domestica HOM05D002882 ORTHO05D003127 6.0e-07 57.0 66 56.1
Os11g0637501 Oryza sativa ssp. japonica HOM05D002882 ORTHO05D003127 6.0e-07 57.0 65 53.8
Phvul.L002646 Phaseolus vulgaris HOM05D002882 ORTHO05D003127 6.0e-07 57.0 66 56.1
Rhsim12G0092300 Rhododendron simsii HOM05D002882 ORTHO05D003127 6.0e-07 57.0 66 56.1
TWI36G1708 Tripterygium wilfordii HOM05D002882 ORTHO05D003127 6.0e-07 57.0 66 56.1
Zm00001eb264480 Zea mays HOM05D002882 ORTHO05D003127 6.0e-07 57.0 65 53.8
Actinidia36810 Actinidia chinensis HOM05D002882 ORTHO05D003127 7.8e-07 56.6 66 56.1
BolC3t19658H Brassica oleracea HOM05D002882 ORTHO05D003127 7.8e-07 56.6 66 56.1
Duzib248G1247 Durio zibethinus HOM05D002882 ORTHO05D003127 7.8e-07 56.6 66 56.1
Duzib268G0405 Durio zibethinus HOM05D002882 ORTHO05D003127 7.8e-07 56.6 65 56.9
Gohir.A01G154400 Gossypium hirsutum HOM05D002882 ORTHO05D003127 7.8e-07 56.6 63 55.6
Lalb_Chr12g0206061 Lupinus albus HOM05D002882 ORTHO05D003127 7.8e-07 56.6 66 54.5
Manes.12G009900 Manihot esculenta HOM05D002882 ORTHO05D003127 7.8e-07 56.6 65 53.8
Nitab4.5_0002317g0010 Nicotiana tabacum HOM05D002882 ORTHO05D003127 7.8e-07 56.6 65 53.8
RcHm_v2.0_Chr4g0430041 Rosa chinensis HOM05D002882 ORTHO05D003127 7.8e-07 56.6 66 56.1
THA.LOC104825496 Tarenaya hassleriana HOM05D002882 ORTHO05D003127 7.8e-07 56.6 66 57.6
vmacro03624 Vaccinium macrocarpon HOM05D002882 ORTHO05D003127 7.8e-07 56.6 60 56.7
vmacro23180 Vaccinium macrocarpon HOM05D002882 ORTHO05D003127 7.8e-07 56.6 60 56.7
Aa31LG4G12570 Aethionema arabicum HOM05D002882 ORTHO05D003127 1.0e-06 56.2 66 56.1
CSS0030072 Camellia sinensis var. sinensis HOM05D002882 ORTHO05D003127 1.0e-06 56.2 65 52.3
Dinv23154 Davidia involucrata HOM05D002882 ORTHO05D003127 1.0e-06 56.2 65 53.8
FvH4_4g23610 Fragaria vesca HOM05D002882 ORTHO05D003127 1.0e-06 56.2 66 54.5
Oeu035471.1 Olea europaea HOM05D002882 ORTHO05D003127 1.0e-06 56.2 66 57.6
Os07g0583000 Oryza sativa ssp. japonica HOM05D002882 ORTHO05D003127 1.0e-06 56.2 61 59.0
Os12g0514100 Oryza sativa ssp. japonica HOM05D002882 ORTHO05D003127 1.0e-06 56.2 65 53.8
Actinidia20716 Actinidia chinensis HOM05D002882 ORTHO05D003127 1.3e-06 55.8 66 54.5
Aa31LG7G9870 Aethionema arabicum HOM05D002882 ORTHO05D003127 1.3e-06 55.8 65 58.5
AL1G40730 Arabidopsis lyrata HOM05D002882 ORTHO05D003127 1.3e-06 55.8 66 54.5
AL1G40750 Arabidopsis lyrata HOM05D002882 ORTHO05D003127 1.3e-06 55.8 66 54.5
AT1G27330 Arabidopsis thaliana HOM05D002882 ORTHO05D003127 1.3e-06 55.8 66 54.5
AT1G27350 Arabidopsis thaliana HOM05D002882 ORTHO05D003127 1.3e-06 55.8 66 54.5
BcaC05g26738 Brassica carinata HOM05D002882 ORTHO05D003127 1.3e-06 55.8 65 55.4
A08p26410 Brassica napus HOM05D002882 ORTHO05D003127 1.3e-06 55.8 65 55.4
A09p38620 Brassica napus HOM05D002882 ORTHO05D003127 1.3e-06 55.8 65 55.4
C03p73670 Brassica napus HOM05D002882 ORTHO05D003127 1.3e-06 55.8 65 55.4
C05p26030 Brassica napus HOM05D002882 ORTHO05D003127 1.3e-06 55.8 65 55.4
BolC5t31322H Brassica oleracea HOM05D002882 ORTHO05D003127 1.3e-06 55.8 65 55.4
BraA08t34592Z Brassica rapa HOM05D002882 ORTHO05D003127 1.3e-06 55.8 65 55.4
BraA09t39365Z Brassica rapa HOM05D002882 ORTHO05D003127 1.3e-06 55.8 65 55.4
BraA09t39367Z Brassica rapa HOM05D002882 ORTHO05D003127 1.3e-06 55.8 65 55.4
Carub.0001s2586 Capsella rubella HOM05D002882 ORTHO05D003127 1.3e-06 55.8 66 54.5
Carub.0001s2588 Capsella rubella HOM05D002882 ORTHO05D003127 1.3e-06 55.8 66 54.5
Dinv11180 Davidia involucrata HOM05D002882 ORTHO05D003127 1.3e-06 55.8 66 56.1
Dinv17570 Davidia involucrata HOM05D002882 ORTHO05D003127 1.3e-06 55.8 66 56.1
PGR102G2921 Punica granatum HOM05D002882 ORTHO05D003127 1.3e-06 55.8 66 54.5
THA.LOC109116983 Tarenaya hassleriana HOM05D002882 ORTHO05D003127 1.3e-06 55.8 65 56.9
Zm00001eb115230 Zea mays HOM05D002882 ORTHO05D003127 1.3e-06 55.8 65 52.3
Actinidia09644 Actinidia chinensis HOM05D002882 ORTHO05D003127 1.7e-06 55.5 66 54.5
arahy.Tifrunner.gnm1.ann1.CG2Z4D Arachis hypogaea HOM05D002882 ORTHO05D003127 1.7e-06 55.5 65 55.4
arahy.Tifrunner.gnm1.ann1.ZB5YIW Arachis hypogaea HOM05D002882 ORTHO05D003127 1.7e-06 55.5 65 55.4
COL.COLO4_20417 Corchorus olitorius HOM05D002882 ORTHO05D003127 1.7e-06 55.5 64 54.7
DCAR_016387 Daucus carota HOM05D002882 ORTHO05D003127 1.7e-06 55.5 66 54.5
Hma1.2p1_0065F.1_g035360 Hydrangea macrophylla HOM05D002882 ORTHO05D003127 1.7e-06 55.5 65 56.9
Lsat_1_v5_gn_5_12541 Lactuca sativa HOM05D002882 ORTHO05D003127 1.7e-06 55.5 64 54.7
Pp3c22_7390 Physcomitrium patens HOM05D002882 ORTHO05D003127 1.7e-06 55.5 65 55.4
Sed0017260 Sechium edule HOM05D002882 ORTHO05D003127 1.7e-06 55.5 65 58.5
TAR627G0864 Trochodendron aralioides HOM05D002882 ORTHO05D003127 1.7e-06 55.5 64 54.7
Zm00001eb107890 Zea mays HOM05D002882 ORTHO05D003127 1.7e-06 55.5 61 55.7
Zm00001eb325710 Zea mays HOM05D002882 ORTHO05D003127 1.7e-06 55.5 61 57.4
Actinidia08876 Actinidia chinensis HOM05D002882 ORTHO05D003127 2.3e-06 55.1 66 56.1
Ciclev10033270m.g Citrus clementina HOM05D002882 ORTHO05D003127 2.3e-06 55.1 66 57.6
Cc11_g17020 Coffea canephora HOM05D002882 ORTHO05D003127 2.3e-06 55.1 64 54.7
Pp3c21_6920 Physcomitrium patens HOM05D002882 ORTHO05D003127 2.3e-06 55.1 65 53.8
PGR004G1099 Punica granatum HOM05D002882 ORTHO05D003127 2.3e-06 55.1 63 55.6
PGR119G2350 Punica granatum HOM05D002882 ORTHO05D003127 2.3e-06 55.1 66 54.5
TPR.G17098 Trifolium pratense HOM05D002882 ORTHO05D003127 2.3e-06 55.1 66 57.6
vmacro16103 Vaccinium macrocarpon HOM05D002882 ORTHO05D003127 2.3e-06 55.1 64 54.7
Atru.chr12.733 Acer truncatum HOM05D002882 ORTHO05D003127 3.0e-06 54.7 66 57.6
Duzib235G1254 Durio zibethinus HOM05D002882 ORTHO05D003127 3.0e-06 54.7 61 57.4
Eucgr.B03504 Eucalyptus grandis HOM05D002882 ORTHO05D003127 3.0e-06 54.7 66 54.5
SalBow8G0743 Salvia bowleyana HOM05D002882 ORTHO05D003127 3.0e-06 54.7 65 53.8
SMO353G0023 Selaginella moellendorffii HOM05D002882 ORTHO05D003127 3.0e-06 54.7 66 56.1
CSS0027104 Camellia sinensis var. sinensis HOM05D002882 ORTHO05D003127 3.9e-06 54.3 64 51.6
CiPaw.05G108400 Carya illinoinensis HOM05D002882 ORTHO05D003127 3.9e-06 54.3 66 53.0
TWI38G0237 Tripterygium wilfordii HOM05D002882 ORTHO05D003127 3.9e-06 54.3 65 55.4
Ciclev10017411m.g Citrus clementina HOM05D002882 ORTHO05D003127 5.1e-06 53.9 62 54.8
ECA232G0131 Erigeron canadensis HOM05D002882 ORTHO05D003127 5.1e-06 53.9 65 53.8
HanXRQChr05g0128701 Helianthus annuus HOM05D002882 ORTHO05D003127 5.1e-06 53.9 66 53.0
Sc04g0010210 Simmondsia chinensis HOM05D002882 ORTHO05D003127 5.1e-06 53.9 65 53.8
Actinidia25567 Actinidia chinensis HOM05D002882 ORTHO05D003127 6.6e-06 53.5 63 57.1
EL10Ac6g13517 Beta vulgaris HOM05D002882 ORTHO05D003127 6.6e-06 53.5 65 52.3
CANSAT01G2319 Cannabis sativa HOM05D002882 ORTHO05D003127 6.6e-06 53.5 66 51.5
CARHR026930 Cardamine hirsuta HOM05D002882 ORTHO05D003127 6.6e-06 53.5 65 53.8
CsaV3_4G002750 Cucumis sativus L. HOM05D002882 ORTHO05D003127 6.6e-06 53.5 65 56.9
Peaxi162Scf00518g00316 Petunia axillaris HOM05D002882 ORTHO05D003127 6.6e-06 53.5 64 53.1
Potri.016G008600 Populus trichocarpa HOM05D002882 ORTHO05D003127 6.6e-06 53.5 65 55.4
QL03p052439 Quercus lobata HOM05D002882 ORTHO05D003127 8.6e-06 53.1 66 51.5
Sed0013705 Sechium edule HOM05D002882 ORTHO05D003127 8.6e-06 53.1 66 50.0


User provided reference genes

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