Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0003631 Helianthus annuus HOM05D003428 ORTHO05D004131 3.4e-101 371.7 192 100.0
Lsat_1_v5_gn_1_124260 Lactuca sativa HOM05D003428 ORTHO05D004131 1.8e-54 216.5 200 63.5
Lsat_1_v5_gn_7_17340 Lactuca sativa HOM05D003428 ORTHO05D004131 9.7e-48 194.1 209 53.6
HanXRQChr05g0129871 Helianthus annuus HOM05D003428 ORTHO05D004131 1.8e-46 189.9 212 49.5
Lj2C271T3 Lonicera japonica HOM05D003428 ORTHO05D004131 1.0e-44 184.1 183 54.6
Dinv20034 Davidia involucrata HOM05D003428 ORTHO05D004131 1.6e-42 176.8 190 51.6
Rhsim02G0110400 Rhododendron simsii HOM05D003428 ORTHO05D004131 4.7e-42 175.3 208 51.0
ECA248G3692 Erigeron canadensis HOM05D003428 ORTHO05D004131 1.0e-41 174.1 148 60.8
RcHm_v2.0_Chr5g0003711 Rosa chinensis HOM05D003428 ORTHO05D004131 6.7e-41 171.4 194 49.0
Prupe.4G024000 Prunus persica HOM05D003428 ORTHO05D004131 1.1e-40 170.6 185 51.4
GSVIVG01012655001 Vitis vinifera HOM05D003428 ORTHO05D004131 2.2e-39 166.4 184 49.5
DCAR_004205 Daucus carota HOM05D003428 ORTHO05D004131 3.7e-39 165.6 201 46.8
Cc09_g01930 Coffea canephora HOM05D003428 ORTHO05D004131 4.8e-39 165.2 205 45.9
TWI38G0316 Tripterygium wilfordii HOM05D003428 ORTHO05D004131 4.8e-39 165.2 201 46.3
TWI38G0331 Tripterygium wilfordii HOM05D003428 ORTHO05D004131 1.1e-38 164.1 201 46.8
Cfa000250 Carpinus fangiana HOM05D003428 ORTHO05D004131 1.4e-38 163.7 194 48.5
Cpa.g.sc198.25 Carica papaya HOM05D003428 ORTHO05D004131 3.1e-38 162.5 194 47.4
Peaxi162Scf00262g00059 Petunia axillaris HOM05D003428 ORTHO05D004131 3.1e-38 162.5 214 43.5
Sopen02g025040 Solanum pennellii HOM05D003428 ORTHO05D004131 3.1e-38 162.5 211 46.0
CiPaw.09G089300 Carya illinoinensis HOM05D003428 ORTHO05D004131 4.1e-38 162.2 195 47.7
Manes.16G010100 Manihot esculenta HOM05D003428 ORTHO05D004131 5.3e-38 161.8 196 48.0
Oeu063903.1 Olea europaea HOM05D003428 ORTHO05D004131 5.3e-38 161.8 185 51.4
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 7.0e-38 161.4 194 48.5
MD10G1317800 Malus domestica HOM05D003428 ORTHO05D004131 9.1e-38 161.0 191 48.2
Solyc02g080340.3 Solanum lycopersicum HOM05D003428 ORTHO05D004131 9.1e-38 161.0 214 44.9
TAR624G0497 Trochodendron aralioides HOM05D003428 ORTHO05D004131 1.2e-37 160.6 186 50.0
FAN21G0107 Fragaria x ananassa HOM05D003428 ORTHO05D004131 3.5e-37 159.1 199 46.2
SalBow3G0064 Salvia bowleyana HOM05D003428 ORTHO05D004131 3.5e-37 159.1 215 47.0
SalBow3G1270 Salvia bowleyana HOM05D003428 ORTHO05D004131 3.5e-37 159.1 215 47.0
AT1G61850 Arabidopsis thaliana HOM05D003428 ORTHO05D004131 4.5e-37 158.7 197 47.2
FvH4_3g02460 Fragaria vesca HOM05D003428 ORTHO05D004131 5.9e-37 158.3 199 46.2
FAN25G3463 Fragaria x ananassa HOM05D003428 ORTHO05D004131 1.0e-36 157.5 200 45.5
CAN.G569.22 Capsicum annuum HOM05D003428 ORTHO05D004131 1.3e-36 157.1 214 43.0
Glyma.17G015200 Glycine max HOM05D003428 ORTHO05D004131 1.3e-36 157.1 200 46.5
Sp2g02690 Schrenkiella parvula HOM05D003428 ORTHO05D004131 1.3e-36 157.1 197 46.2
HPP92_017608 Vanilla planifolia HOM05D003428 ORTHO05D004131 1.3e-36 157.1 201 46.3
Thecc.06G217400 Theobroma cacao HOM05D003428 ORTHO05D004131 1.7e-36 156.8 192 47.4
Gohir.A06G147300 Gossypium hirsutum HOM05D003428 ORTHO05D004131 2.2e-36 156.4 190 47.4
QL05p074042 Quercus lobata HOM05D003428 ORTHO05D004131 2.2e-36 156.4 200 45.5
Thhalv10023219m.g Eutrema salsugineum HOM05D003428 ORTHO05D004131 2.9e-36 156.0 197 46.7
Gohir.D06G153100 Gossypium hirsutum HOM05D003428 ORTHO05D004131 2.9e-36 156.0 190 47.4
Gorai.010G179100 Gossypium raimondii HOM05D003428 ORTHO05D004131 2.9e-36 156.0 190 47.4
MD05G1342900 Malus domestica HOM05D003428 ORTHO05D004131 2.9e-36 156.0 189 47.6
Carub.0002s0319 Capsella rubella HOM05D003428 ORTHO05D004131 5.0e-36 155.2 197 46.2
THA.LOC104809511 Tarenaya hassleriana HOM05D003428 ORTHO05D004131 5.0e-36 155.2 198 48.0
AL2G14210 Arabidopsis lyrata HOM05D003428 ORTHO05D004131 6.5e-36 154.8 197 46.2
Lalb_Chr15g0087431 Lupinus albus HOM05D003428 ORTHO05D004131 2.5e-35 152.9 194 45.4
CiPaw.10G069400 Carya illinoinensis HOM05D003428 ORTHO05D004131 4.2e-35 152.1 192 46.9
Duzib235G0114 Durio zibethinus HOM05D003428 ORTHO05D004131 4.2e-35 152.1 193 43.5
MELO3C002470.2 Cucumis melo HOM05D003428 ORTHO05D004131 5.5e-35 151.8 194 45.4
Migut.M01297 Erythranthe guttata HOM05D003428 ORTHO05D004131 5.5e-35 151.8 222 44.1
MBI02_g28339_MAGBIO Magnolia biondii HOM05D003428 ORTHO05D004131 5.5e-35 151.8 183 49.2
Oeu043543.1 Olea europaea HOM05D003428 ORTHO05D004131 7.2e-35 151.4 236 44.9
SGA_v2.0_scaffold7G03871 Striga asiatica HOM05D003428 ORTHO05D004131 1.2e-34 150.6 230 42.6
BcaC04g22357 Brassica carinata HOM05D003428 ORTHO05D004131 1.6e-34 150.2 198 45.5
C09p20200 Brassica napus HOM05D003428 ORTHO05D004131 1.6e-34 150.2 198 45.5
BolC9t54926H Brassica oleracea HOM05D003428 ORTHO05D004131 1.6e-34 150.2 198 45.5
PSO832G0075 Papaver somniferum HOM05D003428 ORTHO05D004131 1.6e-34 150.2 203 42.4
PGR042G0159 Punica granatum HOM05D003428 ORTHO05D004131 2.1e-34 149.8 200 44.5
Phvul.003G077100 Phaseolus vulgaris HOM05D003428 ORTHO05D004131 2.7e-34 149.4 200 45.0
BraA09t37300Z Brassica rapa HOM05D003428 ORTHO05D004131 3.6e-34 149.1 198 44.9
COL.COLO4_31743 Corchorus olitorius HOM05D003428 ORTHO05D004131 3.6e-34 149.1 193 45.1
A09p16630 Brassica napus HOM05D003428 ORTHO05D004131 4.7e-34 148.7 198 44.9
Gorai.009G177000 Gossypium raimondii HOM05D003428 ORTHO05D004131 8.0e-34 147.9 195 45.6
arahy.Tifrunner.gnm1.ann1.0P9V0B Arachis hypogaea HOM05D003428 ORTHO05D004131 1.0e-33 147.5 197 45.2
Nn1g03583 Nelumbo nucifera HOM05D003428 ORTHO05D004131 1.0e-33 147.5 192 45.8
PSO210G3795 Papaver somniferum HOM05D003428 ORTHO05D004131 1.0e-33 147.5 202 43.1
ClCG03G004880 Citrullus lanatus HOM05D003428 ORTHO05D004131 1.4e-33 147.1 195 43.1
Aa31LG2G8980 Aethionema arabicum HOM05D003428 ORTHO05D004131 1.8e-33 146.7 200 45.0
arahy.Tifrunner.gnm1.ann1.FVAC65 Arachis hypogaea HOM05D003428 ORTHO05D004131 1.8e-33 146.7 198 46.0
arahy.Tifrunner.gnm1.ann1.IL23TX Arachis hypogaea HOM05D003428 ORTHO05D004131 2.3e-33 146.4 199 45.2
BcaB07g31289 Brassica carinata HOM05D003428 ORTHO05D004131 6.7e-33 144.8 198 43.4
Ciclev10014053m.g Citrus clementina HOM05D003428 ORTHO05D004131 1.5e-32 143.7 194 44.8
Aa31LG1G3130 Aethionema arabicum HOM05D003428 ORTHO05D004131 3.3e-32 142.5 154 53.2
CsaV3_1G010910 Cucumis sativus L. HOM05D003428 ORTHO05D004131 3.3e-32 142.5 194 43.8
ATR0752G216 Amborella trichopoda HOM05D003428 ORTHO05D004131 4.4e-32 142.1 183 44.8
AUR62012675 Chenopodium quinoa HOM05D003428 ORTHO05D004131 7.5e-32 141.4 185 42.7
Eucgr.E04091 Eucalyptus grandis HOM05D003428 ORTHO05D004131 8.2e-31 137.9 206 43.7
Sed0007172 Sechium edule HOM05D003428 ORTHO05D004131 1.8e-30 136.7 195 42.1
ECA236G4773 Erigeron canadensis HOM05D003428 ORTHO05D004131 1.6e-29 133.7 127 57.5
CDE05G1926 Ceratophyllum demersum HOM05D003428 ORTHO05D004131 2.7e-29 132.9 183 40.4
arahy.Tifrunner.gnm1.ann1.YW42SM Arachis hypogaea HOM05D003428 ORTHO05D004131 3.5e-29 132.5 185 44.3
Eucgr.E01158 Eucalyptus grandis HOM05D003428 ORTHO05D004131 3.5e-29 132.5 204 44.6
Gohir.D10G014100 Gossypium hirsutum HOM05D003428 ORTHO05D004131 2.9e-28 129.4 193 42.5
Eucgr.L03057 Eucalyptus grandis HOM05D003428 ORTHO05D004131 3.8e-28 129.0 204 42.6
Zm00001eb106120 Zea mays HOM05D003428 ORTHO05D004131 5.0e-28 128.6 209 40.2
Aqoxy7G03064 Aquilegia oxysepala HOM05D003428 ORTHO05D004131 1.5e-27 127.1 217 37.3
CARHR050470 Cardamine hirsuta HOM05D003428 ORTHO05D004131 1.5e-27 127.1 153 47.1
VMungo1215G2587 Vigna mungo HOM05D003428 ORTHO05D004131 1.9e-27 126.7 200 40.5
Hund23486 Selenicereus undatus HOM05D003428 ORTHO05D004131 2.5e-27 126.3 206 39.3
unitig_748.g7971 Utricularia gibba HOM05D003428 ORTHO05D004131 2.5e-27 126.3 216 40.3
Ah.14g088090 Amaranthus hybridus HOM05D003428 ORTHO05D004131 4.2e-27 125.6 188 41.0
Zm00001eb322860 Zea mays HOM05D003428 ORTHO05D004131 1.6e-26 123.6 209 38.8
Os07g0520900 Oryza sativa ssp. japonica HOM05D003428 ORTHO05D004131 2.1e-26 123.2 208 38.9
Lj1A1228G69 Lonicera japonica HOM05D003428 ORTHO05D004131 2.7e-26 122.9 135 49.6
Nitab4.5_0010096g0010 Nicotiana tabacum HOM05D003428 ORTHO05D004131 2.3e-25 119.8 214 35.5
arahy.Tifrunner.gnm1.ann1.D341M5 Arachis hypogaea HOM05D003428 ORTHO05D004131 4.0e-25 119.0 185 41.6
EL10Ac8g20020 Beta vulgaris HOM05D003428 ORTHO05D004131 5.2e-25 118.6 142 46.5
Ah.09g235070 Amaranthus hybridus HOM05D003428 ORTHO05D004131 2.0e-24 116.7 187 38.5
Potri.011G000200 Populus trichocarpa HOM05D003428 ORTHO05D004131 2.6e-24 116.3 195 37.9
CSS0033465 Camellia sinensis var. sinensis HOM05D003428 ORTHO05D004131 7.5e-24 114.8 203 37.4
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 7.5e-24 114.8 197 39.1
vmacro15816 Vaccinium macrocarpon HOM05D003428 ORTHO05D004131 6.3e-23 111.7 126 50.0
CSS0004273 Camellia sinensis var. sinensis HOM05D003428 ORTHO05D004131 3.1e-22 109.4 193 36.3
CSS0019319 Camellia sinensis var. sinensis HOM05D003428 ORTHO05D004131 3.1e-22 109.4 193 36.3
AUR62021981 Chenopodium quinoa HOM05D003428 ORTHO05D004131 5.4e-22 108.6 133 44.4
TPR.G37012 Trifolium pratense HOM05D003428 ORTHO05D004131 3.8e-20 102.4 198 34.8
Hund21391 Selenicereus undatus HOM05D003428 ORTHO05D004131 5.0e-20 102.1 141 39.7
Psat4g063040 Pisum sativum HOM05D003428 ORTHO05D004131 3.3e-19 99.4 198 33.8
Ca_21094_v3 Cicer arietinum L. HOM05D003428 ORTHO05D004131 5.5e-19 98.6 198 33.3
Ca_30202_v3 Cicer arietinum L. HOM05D003428 ORTHO05D004131 5.5e-19 98.6 198 33.3
Potri.004G018700 Populus trichocarpa HOM05D003428 ORTHO05D004131 2.1e-18 96.7 198 36.4
Atru.chr10.2177 Acer truncatum HOM05D003428 ORTHO05D004131 2.8e-18 96.3 138 44.2
Pp3c14_24720 Physcomitrium patens HOM05D003428 ORTHO05D004131 3.0e-17 92.8 156 38.5
Mapoly0096s0015 Marchantia polymorpha HOM05D003428 ORTHO05D004131 1.5e-16 90.5 232 32.3
MSTRG.13151 Avicennia marina HOM05D003428 ORTHO05D004131 2.2e-15 86.7 95 52.6
Medtr4g131850 Medicago truncatula HOM05D003428 ORTHO05D004131 2.8e-15 86.3 198 31.8
Glyma.07G259000 Glycine max HOM05D003428 ORTHO05D004131 4.9e-15 85.5 200 31.0
Dinv13871 Davidia involucrata HOM05D003428 ORTHO05D004131 6.3e-15 85.1 66 63.6
Lj2C596T4 Lonicera japonica HOM05D003428 ORTHO05D004131 1.4e-14 84.0 125 41.6
VMungo1383G2631 Vigna mungo HOM05D003428 ORTHO05D004131 3.1e-14 82.8 93 48.4
QL10p056553 Quercus lobata HOM05D003428 ORTHO05D004131 7.0e-14 81.6 93 47.3
Lj4g0005527 Lotus japonicus HOM05D003428 ORTHO05D004131 9.2e-14 81.3 198 30.3
HanXRQChr15g0471381 Helianthus annuus HOM05D003428 ORTHO05D004131 1.6e-13 80.5 81 51.9
SEGI_09197 Sequoiadendron giganteum HOM05D003428 ORTHO05D004131 7.8e-13 78.2 185 30.3
Actinidia11848 Actinidia chinensis HOM05D003428 ORTHO05D004131 1.3e-12 77.4 148 35.1
SMO367G0744 Selaginella moellendorffii HOM05D003428 ORTHO05D004131 1.9e-11 73.6 149 35.6
Hma1.2p1_3566F.1_g336820 Hydrangea macrophylla HOM05D003428 ORTHO05D004131 7.3e-11 71.6 153 33.3
Hma1.2p1_2687F.1_g326960 Hydrangea macrophylla HOM05D003428 ORTHO05D004131 1.2e-08 64.3 202 28.2
CBR_g8997 Chara braunii HOM05D003428 ORTHO05D004131 4.4e-08 62.4 164 30.5


User provided reference genes

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