Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 0.0e+00 1088.9 533 100.0
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 3.1e-293 1011.1 572 87.9
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 3.1e-293 1011.1 572 87.9
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 3.1e-293 1011.1 572 87.9
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 3.1e-293 1011.1 572 87.9
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 4.0e-285 984.2 570 86.3
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 1.3e-262 909.4 575 80.5
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 3.7e-262 907.9 570 80.9
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 4.5e-260 901.0 573 80.1
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.5e-260 901.0 546 83.9
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.5e-260 901.0 546 83.9
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.1e-258 896.3 574 80.0
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 1.9e-258 895.6 573 79.8
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 2.4e-258 895.2 572 80.1
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 2.4e-258 895.2 572 80.1
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 4.2e-258 894.4 575 79.1
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 4.2e-258 894.4 575 79.1
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.5e-257 891.3 577 79.4
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 4.6e-257 891.0 599 77.1
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 3.9e-256 887.9 572 79.5
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 4.5e-252 874.4 573 78.2
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 1.4e-250 869.4 575 78.1
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 1.3e-248 862.8 564 78.7
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 2.3e-248 862.1 575 78.1
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 3.0e-248 861.7 552 79.3
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 7.4e-247 857.1 573 77.7
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 2.2e-246 855.5 575 77.2
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 1.1e-245 853.2 575 76.9
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 1.5e-244 849.4 565 76.8
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 7.9e-241 837.0 530 80.2
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.5e-236 822.8 541 77.6
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 7.7e-236 820.5 578 74.6
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 7.7e-236 820.5 578 74.6
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 7.7e-236 820.5 578 74.6
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 7.7e-236 820.5 578 74.6
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 7.7e-236 820.5 578 74.6
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 7.7e-236 820.5 578 74.6
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 7.9e-233 810.4 548 76.3
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 5.7e-231 804.3 526 77.9
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 4.5e-228 794.7 460 86.3
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 4.5e-220 768.1 555 73.9
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 5.5e-218 761.1 438 87.4
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 2.4e-213 745.7 573 70.0
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 7.5e-207 724.2 392 91.6
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 1.2e-201 706.8 392 89.8
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 8.6e-179 630.9 360 87.5
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 1.6e-177 626.7 441 74.8
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 4.7e-169 598.6 318 92.1
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 3.2e-165 585.9 461 70.1
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 9.2e-165 584.3 340 86.2
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 1.6e-164 583.6 361 82.8
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 8.7e-155 551.2 533 59.8
BNapus_Darmor_BZH_scaffold_234p00030 Brassica napus HOM05D003783 ORTHO05D004568 5.6e-146 521.9 372 73.9
BraSC177t45753Z Brassica rapa HOM05D003783 ORTHO05D004568 5.6e-146 521.9 372 73.9
Sp3g25620 Schrenkiella parvula HOM05D003783 ORTHO05D004568 9.6e-146 521.2 395 70.9
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 1.8e-144 516.9 568 52.8
ATMG00830 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 3.1e-144 516.2 374 73.3
AL3G44640 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 5.3e-144 515.4 371 73.6
CARHR283110 Cardamine hirsuta HOM05D003783 ORTHO05D004568 3.4e-143 512.7 371 73.0
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 4.5e-143 512.3 521 56.6
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 3.8e-142 509.2 294 88.1
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 3.2e-141 506.1 518 56.6
Lsat_1_v5_gn_7_67781 Lactuca sativa HOM05D003783 ORTHO05D004568 5.5e-141 505.4 270 90.7
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 9.6e-138 494.6 306 82.4
CDE02G3531 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 4.0e-136 489.2 457 59.3
HanXRQChr01g0029691 Helianthus annuus HOM05D003783 ORTHO05D004568 5.0e-134 482.3 242 95.9
Peaxi162Scf00707g00004 Petunia axillaris HOM05D003783 ORTHO05D004568 2.2e-129 466.8 260 90.0
SHI54470 Sapria himalayana HOM05D003783 ORTHO05D004568 3.8e-126 456.1 389 66.1
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 5.0e-126 455.7 390 64.1
Thhalv10029166m.g Eutrema salsugineum HOM05D003783 ORTHO05D004568 8.5e-126 454.9 324 75.0
HanXRQChr11g0334181 Helianthus annuus HOM05D003783 ORTHO05D004568 3.2e-125 453.0 289 80.6
HanXRQChr17g0544011 Helianthus annuus HOM05D003783 ORTHO05D004568 3.2e-125 453.0 289 80.6
Solyc11g063630.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.6e-124 450.7 285 80.7
AUR62033936 Chenopodium quinoa HOM05D003783 ORTHO05D004568 2.7e-124 449.9 296 78.7
Nitab4.5_0000128g0160 Nicotiana tabacum HOM05D003783 ORTHO05D004568 3.0e-123 446.4 248 87.5
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 6.7e-123 445.3 379 65.7
Eucgr.C03075 Eucalyptus grandis HOM05D003783 ORTHO05D004568 2.6e-119 433.3 391 61.1
Lsat_1_v5_gn_4_139080 Lactuca sativa HOM05D003783 ORTHO05D004568 8.5e-118 428.3 217 94.5
SalBow1G3009 Salvia bowleyana HOM05D003783 ORTHO05D004568 3.1e-112 409.8 239 88.3
ATR1173G003 Amborella trichopoda HOM05D003783 ORTHO05D004568 1.1e-106 391.3 261 75.9
Sp3g25860 Schrenkiella parvula HOM05D003783 ORTHO05D004568 1.5e-106 391.0 204 90.7
BraSC48t46298Z Brassica rapa HOM05D003783 ORTHO05D004568 3.1e-104 383.3 200 91.0
BraSC48t46316Z Brassica rapa HOM05D003783 ORTHO05D004568 3.1e-104 383.3 200 91.0
BraSC177t45761Z Brassica rapa HOM05D003783 ORTHO05D004568 1.2e-103 381.3 200 90.5
AL3G44470 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 1.2e-100 371.3 193 91.2
CARHR283230 Cardamine hirsuta HOM05D003783 ORTHO05D004568 1.0e-99 368.2 193 90.7
CAN.G134.19 Capsicum annuum HOM05D003783 ORTHO05D004568 2.2e-97 360.5 287 66.6
SHI54813 Sapria himalayana HOM05D003783 ORTHO05D004568 2.7e-92 343.6 292 64.0
BcaC09g49589 Brassica carinata HOM05D003783 ORTHO05D004568 5.7e-90 335.9 172 91.3
Psat7g150720 Pisum sativum HOM05D003783 ORTHO05D004568 7.5e-90 335.5 239 74.1
Sopen05g012690 Solanum pennellii HOM05D003783 ORTHO05D004568 3.7e-89 333.2 198 87.4
C01p34860 Brassica napus HOM05D003783 ORTHO05D004568 7.0e-88 328.9 176 88.1
BcaC09g49580 Brassica carinata HOM05D003783 ORTHO05D004568 9.1e-88 328.6 191 89.5
BraSC77t46622Z Brassica rapa HOM05D003783 ORTHO05D004568 4.5e-87 326.2 181 91.7
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 5.9e-87 325.9 364 55.8
C01p34760 Brassica napus HOM05D003783 ORTHO05D004568 1.2e-84 318.2 176 85.8
PSO782G0649 Papaver somniferum HOM05D003783 ORTHO05D004568 5.7e-82 309.3 263 62.7
TPR.G22134 Trifolium pratense HOM05D003783 ORTHO05D004568 2.9e-81 307.0 175 86.3
PSO135G0232 Papaver somniferum HOM05D003783 ORTHO05D004568 4.1e-80 303.1 262 62.6
Solyc11g063620.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 7.8e-79 298.9 276 60.5
PSO675G6716 Papaver somniferum HOM05D003783 ORTHO05D004568 5.0e-78 296.2 263 60.5
BraSC48t46228Z Brassica rapa HOM05D003783 ORTHO05D004568 2.0e-74 284.3 144 91.0
Ah.00g237920 Amaranthus hybridus HOM05D003783 ORTHO05D004568 8.3e-73 278.9 226 67.7
MBI19_g47479_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 1.9e-72 277.7 189 77.8
Nitab4.5_0002589g0080 Nicotiana tabacum HOM05D003783 ORTHO05D004568 4.1e-72 276.6 238 63.0
CAN.G1001.41 Capsicum annuum HOM05D003783 ORTHO05D004568 6.6e-70 269.2 347 46.7
BolSC28t60306H Brassica oleracea HOM05D003783 ORTHO05D004568 1.1e-69 268.5 172 76.7
BolSC28t60363H Brassica oleracea HOM05D003783 ORTHO05D004568 1.1e-69 268.5 172 76.7
HanXRQChr01g0013391 Helianthus annuus HOM05D003783 ORTHO05D004568 3.3e-69 266.9 134 95.5
MSTRG.27795 Avicennia marina HOM05D003783 ORTHO05D004568 4.3e-69 266.5 162 82.1
Lj2P1232T100 Lonicera japonica HOM05D003783 ORTHO05D004568 6.4e-65 252.7 132 92.4
CARHR287240 Cardamine hirsuta HOM05D003783 ORTHO05D004568 1.4e-64 251.5 205 67.3
BcaC09g49594 Brassica carinata HOM05D003783 ORTHO05D004568 2.4e-64 250.8 136 91.9
Nitab4.5_0008535g0060 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.7e-63 247.3 149 84.6
HanXRQChr11g0334171 Helianthus annuus HOM05D003783 ORTHO05D004568 1.3e-62 245.0 191 67.0
HanXRQChr17g0544021 Helianthus annuus HOM05D003783 ORTHO05D004568 1.3e-62 245.0 191 67.0
BolSC28t60416H Brassica oleracea HOM05D003783 ORTHO05D004568 3.3e-61 240.4 234 55.6
DCAR_032038 Daucus carota HOM05D003783 ORTHO05D004568 1.4e-59 235.0 122 94.3
CAN.G1439.8 Capsicum annuum HOM05D003783 ORTHO05D004568 2.0e-58 231.1 264 53.0
AT2G07768 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 7.6e-58 229.2 120 93.3
Lsat_1_v5_gn_8_111800 Lactuca sativa HOM05D003783 ORTHO05D004568 2.1e-55 221.1 121 90.1
BolC1t03452H Brassica oleracea HOM05D003783 ORTHO05D004568 7.8e-55 219.2 112 90.2
Lsat_1_v5_gn_5_16140 Lactuca sativa HOM05D003783 ORTHO05D004568 1.6e-52 211.5 122 86.1
Sc22g0004100 Simmondsia chinensis HOM05D003783 ORTHO05D004568 3.6e-52 210.3 118 87.3
Nitab4.5_0004300g0270 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.8e-51 208.0 123 85.4
ClCG09G015160 Citrullus lanatus HOM05D003783 ORTHO05D004568 7.6e-50 202.6 108 93.5
TPR.G885 Trifolium pratense HOM05D003783 ORTHO05D004568 6.4e-49 199.5 116 87.9
CAN.G1576.3 Capsicum annuum HOM05D003783 ORTHO05D004568 1.4e-48 198.4 130 77.7
PGR028G0013 Punica granatum HOM05D003783 ORTHO05D004568 7.1e-48 196.1 117 86.3
BraSC48t46351Z Brassica rapa HOM05D003783 ORTHO05D004568 1.1e-45 188.7 100 91.0
Solyc04g049870.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.2e-42 178.7 331 41.1
BraSC48t46252Z Brassica rapa HOM05D003783 ORTHO05D004568 6.0e-39 166.4 98 83.7
BolC1t03443H Brassica oleracea HOM05D003783 ORTHO05D004568 1.7e-38 164.9 91 86.8
arahy.Tifrunner.gnm1.ann1.BUQ0M3 Arachis hypogaea HOM05D003783 ORTHO05D004568 3.0e-38 164.1 158 59.5
Nitab4.5_0000172g1380 Nicotiana tabacum HOM05D003783 ORTHO05D004568 8.7e-38 162.5 121 72.7
Nitab4.5_0002888g0030 Nicotiana tabacum HOM05D003783 ORTHO05D004568 6.2e-36 156.4 94 85.1
QL02p008127 Quercus lobata HOM05D003783 ORTHO05D004568 2.6e-34 151.0 75 96.0
BolSC28t60383H Brassica oleracea HOM05D003783 ORTHO05D004568 9.9e-34 149.1 77 88.3
BraSC224t45815Z Brassica rapa HOM05D003783 ORTHO05D004568 9.9e-34 149.1 77 88.3
Lalb_Chr11g0068271 Lupinus albus HOM05D003783 ORTHO05D004568 4.6e-31 140.2 77 81.8
BolC1t03458H Brassica oleracea HOM05D003783 ORTHO05D004568 7.9e-31 139.4 78 83.3
Ciclev10003580m.g Citrus clementina HOM05D003783 ORTHO05D004568 1.8e-30 138.3 137 56.2
CAN.G1439.7 Capsicum annuum HOM05D003783 ORTHO05D004568 3.7e-28 130.6 77 79.2
SHI32491 Sapria himalayana HOM05D003783 ORTHO05D004568 4.8e-28 130.2 163 47.9
BraSC54t46361Z Brassica rapa HOM05D003783 ORTHO05D004568 2.4e-27 127.9 66 90.9
Dinv06615 Davidia involucrata HOM05D003783 ORTHO05D011738 2.0e-26 124.8 65 92.3
CAN.G124.8 Capsicum annuum HOM05D003783 ORTHO05D004568 1.0e-25 122.5 93 69.9
Nitab4.5_0011099g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 7.9e-23 112.8 62 88.7
Solyc02g050290.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.7e-20 104.0 74 74.3
Ah.01g011720 Amaranthus hybridus HOM05D003783 ORTHO05D013694 1.4e-19 102.1 99 58.6
CAN.G1439.6 Capsicum annuum HOM05D003783 ORTHO05D004568 1.5e-18 98.6 197 35.5
Lalb_Chr22g0357831 Lupinus albus HOM05D003783 ORTHO05D004568 1.5e-18 98.6 71 67.6
Solyc08g029270.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.5e-18 98.6 64 67.2
TPR.G13188 Trifolium pratense HOM05D003783 ORTHO05D004568 5.0e-17 93.6 51 72.5
C05p22550 Brassica napus HOM05D003783 ORTHO05D004568 6.5e-17 93.2 56 82.1
BolC5t30954H Brassica oleracea HOM05D003783 ORTHO05D004568 4.6e-15 87.0 56 78.6
Lalb_Chr22g0357821 Lupinus albus HOM05D003783 ORTHO05D004568 3.9e-14 84.0 84 51.2
Nitab4.5_0002739g0140 Nicotiana tabacum HOM05D003783 ORTHO05D015637 6.7e-14 83.2 47 83.0
Aqoxy1G02245 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 8.7e-14 82.8 49 89.8
Nitab4.5_0005837g0060 Nicotiana tabacum HOM05D000102 ORTHO05D000138 2.5e-13 81.3 48 81.2
SHI26670 Sapria himalayana HOM05D003783 ORTHO05D004568 5.7e-13 80.1 54 66.7
Solyc12g035895.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.6e-12 78.6 139 38.8
SHI26671 Sapria himalayana HOM05D003783 ORTHO05D004568 4.8e-12 77.0 67 59.7
Solyc06g065880.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.8e-12 77.0 114 43.0
ATR1173G002 Amborella trichopoda HOM05D003783 ORTHO05D004568 8.2e-12 76.3 50 72.0
SHI28703 Sapria himalayana HOM05D003783 ORTHO05D004568 2.4e-11 74.7 63 61.9
SEGI_06792 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 4.1e-11 73.9 54 72.2
SHI11506 Sapria himalayana HOM05D003783 ORTHO05D004568 2.0e-10 71.6 58 60.3
Actinidia31963 Actinidia chinensis HOM05D000944 ORTHO05D003581 5.9e-10 70.1 53 66.0
Solyc12g035910.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.7e-09 68.6 49 69.4
CAN.G1439.3 Capsicum annuum HOM05D002965 ORTHO05D010183 2.2e-09 68.2 50 60.0
Nitab4.5_0011099g0020 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.2e-09 68.2 41 82.9
Solyc03g013380.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.2e-09 68.2 45 77.8
SHI26672 Sapria himalayana HOM05D003783 ORTHO05D004568 1.4e-08 65.5 107 43.9
Lsat_1_v5_gn_4_3660 Lactuca sativa HOM05D003783 ORTHO05D001069 1.9e-08 65.1 43 74.4
Solyc10g048130.3 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.4e-06 58.9 126 38.1
BcaC01g03561 Brassica carinata HOM05D025145 ORTHO05D016019 3.0e-06 57.8 45 66.7
Aa31csc822G30 Aethionema arabicum HOM05D001987 ORTHO05D006514 5.1e-06 57.0 83 38.6
CAN.G60.11 Capsicum annuum HOM05D001322 ORTHO05D001301 6.7e-06 56.6 35 80.0
Peaxi162Scf00122g00087 Petunia axillaris HOM05D000216 ORTHO05D000634 8.8e-06 56.2 28 92.9


User provided reference genes

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