Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0002971 Helianthus annuus HOM05D003848 ORTHO05D004616 9.0e-179 630.9 556 100.0
Lsat_1_v5_gn_5_184160 Lactuca sativa HOM05D003848 ORTHO05D004616 3.4e-93 346.7 572 67.1
ECA248G3600 Erigeron canadensis HOM05D003848 ORTHO05D004616 9.9e-93 345.1 567 65.4
Hma1.2p1_0822F.1_g224390 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 5.2e-86 322.8 477 60.6
Nitab4.5_0005156g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 7.8e-82 308.9 450 63.6
MSTRG.21553 Avicennia marina HOM05D003848 ORTHO05D004616 1.9e-80 304.3 474 63.7
CiPaw.08G106300 Carya illinoinensis HOM05D003848 ORTHO05D004616 4.3e-80 303.1 571 52.2
Lj2C1116T3 Lonicera japonica HOM05D003848 ORTHO05D004616 9.6e-80 302.0 563 63.1
Nitab4.5_0006700g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 9.6e-80 302.0 449 66.8
Oeu028073.1 Olea europaea HOM05D003848 ORTHO05D004616 2.8e-79 300.4 436 63.3
GSVIVG01001165001 Vitis vinifera HOM05D003848 ORTHO05D004616 3.1e-78 297.0 567 56.3
Solyc11g071660.1 Solanum lycopersicum HOM05D003848 ORTHO05D004616 4.0e-78 296.6 457 63.5
Sopen11g029330 Solanum pennellii HOM05D003848 ORTHO05D004616 4.0e-78 296.6 457 63.2
Migut.D00312 Erythranthe guttata HOM05D003848 ORTHO05D004616 6.9e-78 295.8 472 63.6
Lj1C175T4 Lonicera japonica HOM05D003848 ORTHO05D004616 3.4e-77 293.5 583 60.2
SGA_v2.0_scaffold1G00491 Striga asiatica HOM05D003848 ORTHO05D004616 9.9e-77 292.0 442 67.4
Dinv32920 Davidia involucrata HOM05D003848 ORTHO05D004616 1.3e-76 291.6 454 61.5
CAN.G439.4 Capsicum annuum HOM05D003848 ORTHO05D004616 2.2e-76 290.8 462 58.2
Nn1g02285 Nelumbo nucifera HOM05D003848 ORTHO05D004616 2.2e-76 290.8 468 66.0
PGSC0003DMG400046756 Solanum tuberosum HOM05D003848 ORTHO05D004616 3.8e-76 290.0 457 65.0
Ca_09749_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 4.9e-76 289.7 440 75.7
Aqoxy2G03377 Aquilegia oxysepala HOM05D003848 ORTHO05D004616 8.4e-76 288.9 564 58.3
Psat4g156760 Pisum sativum HOM05D003848 ORTHO05D004616 8.4e-76 288.9 459 63.6
Glyma.02G146600 Glycine max HOM05D003848 ORTHO05D004616 1.9e-75 287.7 566 60.2
Glyma.10G027400 Glycine max HOM05D003848 ORTHO05D004616 1.9e-75 287.7 566 58.3
Cfa003508 Carpinus fangiana HOM05D003848 ORTHO05D004616 2.4e-75 287.3 564 55.5
arahy.Tifrunner.gnm1.ann1.X3NAFX Arachis hypogaea HOM05D003848 ORTHO05D004616 4.2e-75 286.6 578 56.7
DCAR_000720 Daucus carota HOM05D003848 ORTHO05D004616 5.4e-75 286.2 474 63.3
TAR369G1095 Trochodendron aralioides HOM05D003848 ORTHO05D004616 5.4e-75 286.2 463 65.2
Cc00_g04130 Coffea canephora HOM05D003848 ORTHO05D004616 9.3e-75 285.4 445 61.3
Cc01_g10690 Coffea canephora HOM05D003848 ORTHO05D004616 9.3e-75 285.4 488 66.0
Oeu041715.2 Olea europaea HOM05D003848 ORTHO05D004616 1.6e-74 284.6 543 52.5
VMungo0720G2447 Vigna mungo HOM05D003848 ORTHO05D004616 2.1e-74 284.3 572 54.5
Potri.002G051500 Populus trichocarpa HOM05D003848 ORTHO05D004616 3.5e-74 283.5 562 55.2
Rhsim01G0273900 Rhododendron simsii HOM05D003848 ORTHO05D004616 3.5e-74 283.5 458 64.6
TAR633G0718 Trochodendron aralioides HOM05D003848 ORTHO05D004616 3.5e-74 283.5 468 69.0
Potri.005G210900 Populus trichocarpa HOM05D003848 ORTHO05D004616 4.6e-74 283.1 565 64.1
COL.COLO4_09072 Corchorus olitorius HOM05D003848 ORTHO05D004616 6.0e-74 282.7 564 51.2
Cfa006159 Carpinus fangiana HOM05D003848 ORTHO05D004616 1.0e-73 282.0 566 57.1
arahy.Tifrunner.gnm1.ann1.ARWK2P Arachis hypogaea HOM05D003848 ORTHO05D004616 1.3e-73 281.6 583 55.1
unitig_0.g1040 Utricularia gibba HOM05D003848 ORTHO05D004616 1.7e-73 281.2 447 53.5
Actinidia24902 Actinidia chinensis HOM05D003848 ORTHO05D004616 2.3e-73 280.8 440 68.9
Phvul.007G172800 Phaseolus vulgaris HOM05D003848 ORTHO05D004616 2.3e-73 280.8 563 53.1
Cpa.g.sc52.49 Carica papaya HOM05D003848 ORTHO05D004616 3.9e-73 280.0 471 67.3
MBI07_g03188_MAGBIO Magnolia biondii HOM05D003848 ORTHO05D004616 5.1e-73 279.6 458 59.6
Medtr8g028640 Medicago truncatula HOM05D003848 ORTHO05D004616 1.9e-72 277.7 459 65.4
HPP92_009020 Vanilla planifolia HOM05D003848 ORTHO05D004616 2.5e-72 277.3 466 51.9
Prupe.8G239200 Prunus persica HOM05D003848 ORTHO05D004616 3.3e-72 276.9 582 55.0
Lalb_Chr06g0162931 Lupinus albus HOM05D003848 ORTHO05D004616 4.3e-72 276.6 460 64.3
Ciclev10019827m.g Citrus clementina HOM05D003848 ORTHO05D004616 7.3e-72 275.8 161 85.7
CANSAT01G1819 Cannabis sativa HOM05D003848 ORTHO05D004616 9.6e-72 275.4 169 84.0
Thecc.01G276600 Theobroma cacao HOM05D003848 ORTHO05D004616 3.6e-71 273.5 447 71.4
TWI59G1147 Tripterygium wilfordii HOM05D003848 ORTHO05D004616 6.2e-71 272.7 576 54.9
Haze_16066 Corylus avellana HOM05D003848 ORTHO05D004616 1.4e-70 271.6 564 55.5
FAN17G2080 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.4e-70 271.6 447 66.0
FAN22G1557 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.8e-70 271.2 177 79.7
Gohir.A12G004500 Gossypium hirsutum HOM05D003848 ORTHO05D004616 1.8e-70 271.2 454 67.2
Atru.chr5.1462 Acer truncatum HOM05D003848 ORTHO05D004616 2.4e-70 270.8 437 58.8
Gorai.008G004000 Gossypium raimondii HOM05D003848 ORTHO05D004616 2.4e-70 270.8 443 73.1
THA.LOC104801238 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 2.4e-70 270.8 438 70.8
Gohir.D12G004200 Gossypium hirsutum HOM05D003848 ORTHO05D004616 3.1e-70 270.4 443 73.4
Lj5g0005692 Lotus japonicus HOM05D003848 ORTHO05D004616 3.1e-70 270.4 570 52.1
RcHm_v2.0_Chr4g0409951 Rosa chinensis HOM05D003848 ORTHO05D004616 3.1e-70 270.4 574 54.7
TPR.G28157 Trifolium pratense HOM05D003848 ORTHO05D004616 3.1e-70 270.4 165 83.0
Sabra05G0161100 Salix brachista HOM05D003848 ORTHO05D004616 6.9e-70 269.2 560 59.5
SHI27493 Sapria himalayana HOM05D004058 ORTHO05D001984 9.0e-70 268.9 165 80.6
CDE06G2067 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 2.0e-69 267.7 173 80.9
MD11G1283600 Malus domestica HOM05D003848 ORTHO05D004616 2.0e-69 267.7 583 57.5
ATR0824G270 Amborella trichopoda HOM05D003848 ORTHO05D004616 4.5e-69 266.5 175 79.4
THA.LOC104825995 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 9.9e-69 265.4 158 83.5
AUR62017852 Chenopodium quinoa HOM05D003848 ORTHO05D004616 1.3e-68 265.0 167 82.0
FvH4_4g12190 Fragaria vesca HOM05D003848 ORTHO05D004616 1.3e-68 265.0 577 57.7
SEGI_20713 Sequoiadendron giganteum HOM05D003848 ORTHO05D004616 2.2e-68 264.2 172 80.2
AagrBONN_evm.TU.Sc2ySwM_362.1784 Anthoceros agrestis HOM05D003848 ORTHO05D004616 2.9e-68 263.8 165 82.4
Haze_04691 Corylus avellana HOM05D003848 ORTHO05D004616 2.9e-68 263.8 572 52.6
FAN07G0259 Fragaria x ananassa HOM05D003848 ORTHO05D004616 2.9e-68 263.8 565 57.9
PGR119G0967 Punica granatum HOM05D003848 ORTHO05D004616 2.9e-68 263.8 568 68.0
AUR62003538 Chenopodium quinoa HOM05D003848 ORTHO05D004616 3.8e-68 263.5 167 81.4
PSO832G2619 Papaver somniferum HOM05D003848 ORTHO05D004616 3.8e-68 263.5 158 84.8
vmacro19513 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 4.9e-68 263.1 570 54.0
PSO210G3188 Papaver somniferum HOM05D003848 ORTHO05D004616 6.4e-68 262.7 464 58.6
QL01p012613 Quercus lobata HOM05D003848 ORTHO05D004616 1.1e-67 261.9 560 53.2
vmacro18863 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 1.1e-67 261.9 573 56.4
Manes.05G077600 Manihot esculenta HOM05D003848 ORTHO05D004616 1.4e-67 261.5 562 53.6
Peaxi162Scf00217g00025 Petunia axillaris HOM05D003848 ORTHO05D004616 1.9e-67 261.2 547 59.0
BcaB01g02014 Brassica carinata HOM05D003848 ORTHO05D004616 2.4e-67 260.8 439 60.4
ATR0332G007 Amborella trichopoda HOM05D003848 ORTHO05D004616 3.2e-67 260.4 512 56.4
Aa31LG5G2360 Aethionema arabicum HOM05D003848 ORTHO05D004616 9.3e-67 258.8 438 65.1
Ah.02g110950 Amaranthus hybridus HOM05D003848 ORTHO05D004616 1.2e-66 258.5 156 84.6
MD03G1262900 Malus domestica HOM05D003848 ORTHO05D004616 1.2e-66 258.5 574 58.4
Mapoly0051s0007 Marchantia polymorpha HOM05D003848 ORTHO05D004616 1.6e-66 258.1 166 80.7
CARHR251050 Cardamine hirsuta HOM05D003848 ORTHO05D004616 2.1e-66 257.7 163 81.6
Pp3c9_17960 Physcomitrium patens HOM05D003848 ORTHO05D004616 3.5e-66 256.9 166 80.1
Zm00001eb314820 Zea mays HOM05D003848 ORTHO05D004616 7.9e-66 255.8 158 81.0
BcaC01g01560 Brassica carinata HOM05D003848 ORTHO05D004616 1.3e-65 255.0 168 78.6
AT4G02720 Arabidopsis thaliana HOM05D003848 ORTHO05D004616 3.9e-65 253.4 444 64.9
ClCG10G016420 Citrullus lanatus HOM05D003848 ORTHO05D004616 5.1e-65 253.1 151 84.1
C03p93080 Brassica napus HOM05D003848 ORTHO05D004616 6.7e-65 252.7 169 78.7
AagrBONN_evm.TU.Sc2ySwM_344.5133 Anthoceros agrestis HOM05D003848 ORTHO05D004616 1.5e-64 251.5 154 83.1
Sp6g02650 Schrenkiella parvula HOM05D003848 ORTHO05D004616 1.9e-64 251.1 441 66.0
Carub.0006s3439 Capsella rubella HOM05D003848 ORTHO05D004616 2.5e-64 250.8 443 66.4
Thhalv10028691m.g Eutrema salsugineum HOM05D003848 ORTHO05D004616 2.5e-64 250.8 441 65.3
CBR_g4136 Chara braunii HOM05D003848 ORTHO05D004616 3.3e-64 250.4 161 78.9
Manes.01G206800 Manihot esculenta HOM05D003848 ORTHO05D004616 3.3e-64 250.4 457 54.0
EL10Ac5g10556 Beta vulgaris HOM05D003848 ORTHO05D004616 4.3e-64 250.0 558 63.1
AL6G50290 Arabidopsis lyrata HOM05D003848 ORTHO05D004616 1.3e-63 248.4 444 62.4
Sc24g0003320 Simmondsia chinensis HOM05D003848 ORTHO05D004616 1.3e-63 248.4 593 53.8
Sed0011367 Sechium edule HOM05D003848 ORTHO05D004616 2.8e-63 247.3 438 64.4
SMO231G0049 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 3.7e-63 246.9 156 80.1
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 3.7e-63 246.9 156 80.1
Hund11854 Selenicereus undatus HOM05D003848 ORTHO05D004616 3.7e-63 246.9 164 76.8
C03p93150 Brassica napus HOM05D003848 ORTHO05D004616 6.2e-63 246.1 155 81.3
BraA09t35861Z Brassica rapa HOM05D003848 ORTHO05D004616 2.4e-62 244.2 136 88.2
BolC8t51344H Brassica oleracea HOM05D003848 ORTHO05D004616 1.5e-61 241.5 437 53.8
C08p37610 Brassica napus HOM05D003848 ORTHO05D004616 2.6e-61 240.7 134 88.1
BolC9t53150H Brassica oleracea HOM05D003848 ORTHO05D004616 2.6e-61 240.7 134 88.1
Duzib177G1090 Durio zibethinus HOM05D003848 ORTHO05D004616 2.6e-61 240.7 170 74.1
MELO3C009735.2 Cucumis melo HOM05D003848 ORTHO05D004616 4.5e-61 240.0 575 58.3
FAN22G0164 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.3e-60 238.4 429 65.0
BcaC01g01554 Brassica carinata HOM05D003848 ORTHO05D004616 2.9e-60 237.3 129 91.5
CsaV3_3G039920 Cucumis sativus L. HOM05D003848 ORTHO05D004616 2.9e-60 237.3 586 57.8
BcaC04g24009 Brassica carinata HOM05D003848 ORTHO05D004616 8.4e-60 235.7 134 86.6
C03p93100 Brassica napus HOM05D003848 ORTHO05D004616 1.1e-59 235.3 133 87.2
C03p93070 Brassica napus HOM05D003848 ORTHO05D004616 2.4e-59 234.2 132 87.1
BolC3t21610H Brassica oleracea HOM05D003848 ORTHO05D004616 3.2e-59 233.8 124 91.9
BcaC01g01558 Brassica carinata HOM05D003848 ORTHO05D004616 7.1e-59 232.6 132 87.1
A09p02120 Brassica napus HOM05D003848 ORTHO05D004616 9.3e-59 232.3 443 54.4
C09p02220 Brassica napus HOM05D003848 ORTHO05D004616 1.2e-58 231.9 164 75.6
BolC3t21613H Brassica oleracea HOM05D003848 ORTHO05D004616 4.6e-58 229.9 133 85.0
A09p54740 Brassica napus HOM05D003848 ORTHO05D004616 6.0e-58 229.6 129 87.6
A04p19390 Brassica napus HOM05D003848 ORTHO05D004616 7.9e-58 229.2 172 73.3
BraA04t17534Z Brassica rapa HOM05D003848 ORTHO05D004616 1.0e-57 228.8 165 76.4
C09p02210 Brassica napus HOM05D003848 ORTHO05D004616 3.9e-57 226.9 129 86.8
BcaC02g08380 Brassica carinata HOM05D003848 ORTHO05D004616 1.1e-56 225.3 174 70.1
A09p30470 Brassica napus HOM05D003848 ORTHO05D004616 1.1e-56 225.3 128 88.3
C04p54970 Brassica napus HOM05D003848 ORTHO05D004616 1.9e-56 224.6 164 73.2
BolC4t27032H Brassica oleracea HOM05D003848 ORTHO05D004616 1.9e-56 224.6 164 73.2
BcaC01g01561 Brassica carinata HOM05D003848 ORTHO05D004616 5.6e-56 223.0 130 84.6
Rhsim10G0030500 Rhododendron simsii HOM05D003848 ORTHO05D004616 5.6e-56 223.0 140 82.9
TPR.G23082 Trifolium pratense HOM05D003848 ORTHO05D004616 4.0e-54 216.9 131 83.2
QL03p072399 Quercus lobata HOM05D003848 ORTHO05D004616 1.6e-50 204.9 425 50.1
CDE07G1463 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 3.0e-49 200.7 167 65.9
SalBow4G2167 Salvia bowleyana HOM05D003848 ORTHO05D004616 4.3e-48 196.8 159 67.3
SGA_v2.0_scaffold138G35328 Striga asiatica HOM05D003848 ORTHO05D004616 6.3e-47 193.0 164 64.6
Ca_04836_v3 Cicer arietinum L. HOM05D001515 ORTHO05D004616 4.1e-46 190.3 112 83.9
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 1.0e-44 185.7 402 64.2
C03p93140 Brassica napus HOM05D003848 ORTHO05D004616 1.4e-43 181.8 124 77.4
Nn4g26302 Nelumbo nucifera HOM05D003848 ORTHO05D004616 3.6e-42 177.2 101 88.1
BcaC03g13677 Brassica carinata HOM05D003848 ORTHO05D004616 7.9e-42 176.0 128 75.0
MCO02G035 Micromonas commoda HOM05D003848 ORTHO05D004616 2.3e-41 174.5 106 83.0
Oeu017054.1 Olea europaea HOM05D004271 ORTHO05D006011 8.8e-41 172.6 128 72.7
BcaC03g16168 Brassica carinata HOM05D003848 ORTHO05D004616 1.3e-39 168.7 103 80.6
Hma1.2p1_0667F.1_g199770 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 4.1e-38 163.7 163 58.3
PRCOL_00001828 Prasinoderma coloniale HOM05D003848 ORTHO05D004616 3.2e-35 154.1 105 71.4
Cre01.g032250 Chlamydomonas reinhardtii HOM05D003848 ORTHO05D004616 1.1e-32 145.6 100 69.0
BraA09t40884Z Brassica rapa HOM05D003848 ORTHO05D004616 2.6e-32 144.4 84 84.5
BraA09t38617Z Brassica rapa HOM05D003848 ORTHO05D004616 3.7e-31 140.6 80 88.8
Actinidia21120 Actinidia chinensis HOM05D003848 ORTHO05D004616 2.0e-29 134.8 164 51.2
Haze_27548 Corylus avellana HOM05D003848 ORTHO05D004616 1.3e-28 132.1 112 54.5
C02p39120 Brassica napus HOM05D003848 ORTHO05D004616 1.1e-27 129.0 84 76.2
Os09g0455400 Oryza sativa ssp. japonica HOM05D003848 ORTHO05D004616 1.4e-27 128.6 70 91.4
BolC2t09922H Brassica oleracea HOM05D003848 ORTHO05D004616 3.2e-27 127.5 84 75.0
unitig_0.g1042 Utricularia gibba HOM05D003848 ORTHO05D004616 1.7e-23 115.2 65 86.2
BNapus_Darmor_BZH_scaffold_38p02440 Brassica napus HOM05D003848 ORTHO05D004616 7.0e-22 109.8 68 79.4
BNapus_Darmor_BZH_scaffold_38p02460 Brassica napus HOM05D003848 ORTHO05D004616 9.1e-22 109.4 60 88.3
FAN22G1718 Fragaria x ananassa HOM05D003848 ORTHO05D004616 2.6e-21 107.8 356 59.0
BolC2t06954H Brassica oleracea HOM05D003848 ORTHO05D004616 4.2e-19 100.5 64 82.8
vmacro19512 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 2.1e-18 98.2 432 45.1
MD07G1100600 Malus domestica HOM05D003848 ORTHO05D004616 2.7e-18 97.8 86 62.8
Ca_05843_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 9.7e-16 89.4 52 82.7
Lj1A173G45 Lonicera japonica HOM05D003848 ORTHO05D004616 1.8e-14 85.1 201 37.8
Prupe.6G167600 Prunus persica HOM05D003848 ORTHO05D004616 9.1e-14 82.8 56 75.0
FAN22G0082 Fragaria x ananassa HOM05D003848 ORTHO05D035678 1.3e-12 79.0 69 66.7
C03p93060 Brassica napus HOM05D003848 ORTHO05D004616 5.5e-11 73.6 83 54.2
BolC3t21614H Brassica oleracea HOM05D003848 ORTHO05D004616 1.0e-09 69.3 44 77.3
BraA09t40883Z Brassica rapa HOM05D003848 ORTHO05D004616 6.8e-09 66.6 82 54.9
BcaC01g01557 Brassica carinata HOM05D003848 ORTHO05D004616 5.7e-08 63.5 84 46.4
FvH4_2g11951 Fragaria vesca HOM05D003848 ORTHO05D035678 1.1e-06 59.3 43 69.8
FAN24G2199 Fragaria x ananassa HOM05D003848 ORTHO05D035678 9.1e-06 56.2 43 67.4


User provided reference genes

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