Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 2.2e-213 745.3 376 100.0
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 1.3e-149 533.5 366 76.2
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 2.8e-147 525.8 375 73.9
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 1.1e-135 487.3 368 69.0
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 2.7e-134 482.6 373 68.4
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 3.3e-132 475.7 355 68.7
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 4.3e-132 475.3 385 66.0
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 1.2e-131 473.8 367 66.8
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 2.1e-131 473.0 363 68.3
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 3.6e-131 472.2 380 66.6
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 1.5e-129 466.8 362 66.9
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 3.4e-129 465.7 361 66.2
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 4.4e-129 465.3 363 65.0
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 7.5e-129 464.5 355 66.5
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 4.9e-128 461.8 377 65.0
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 4.9e-128 461.8 384 62.8
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 6.4e-128 461.5 355 66.8
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 1.4e-127 460.3 370 64.3
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 1.9e-127 459.9 375 64.3
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 3.2e-127 459.1 376 65.2
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 1.2e-126 457.2 381 63.3
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 1.6e-126 456.8 345 67.5
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 1.6e-126 456.8 374 63.9
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 2.7e-126 456.1 371 63.6
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 3.5e-126 455.7 355 65.9
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 6.0e-126 454.9 412 60.2
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 7.8e-126 454.5 384 61.2
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 1.7e-125 453.4 376 63.3
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 2.3e-125 453.0 355 65.4
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 5.1e-125 451.8 360 66.1
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 6.6e-125 451.4 363 63.9
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 1.9e-124 449.9 378 62.4
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 2.5e-124 449.5 363 63.9
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 2.5e-124 449.5 388 61.6
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 3.3e-124 449.1 381 63.3
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 4.3e-124 448.7 371 63.6
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 4.3e-124 448.7 375 64.3
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 9.5e-124 447.6 380 62.9
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 2.8e-123 446.0 375 62.4
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 1.1e-122 444.1 388 61.3
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 2.3e-122 443.0 358 64.0
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 4.0e-122 442.2 373 60.9
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 1.2e-121 440.7 401 59.6
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 3.4e-121 439.1 373 62.2
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 3.4e-121 439.1 370 61.4
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 4.4e-121 438.7 376 63.3
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 7.6e-121 438.0 373 61.9
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 1.3e-120 437.2 388 59.3
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 2.2e-120 436.4 359 63.0
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 8.4e-120 434.5 376 62.0
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 1.1e-119 434.1 367 62.4
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 1.1e-119 434.1 363 62.5
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 1.9e-119 433.3 378 59.8
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 2.4e-119 433.0 359 62.4
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 2.4e-119 433.0 358 62.3
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 3.2e-119 432.6 287 73.5
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 5.4e-119 431.8 373 62.7
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 5.4e-119 431.8 375 61.3
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 2.1e-118 429.9 372 61.3
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 2.1e-118 429.9 372 61.3
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 2.1e-118 429.9 368 60.3
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 7.8e-118 427.9 355 62.0
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 1.0e-117 427.6 369 61.8
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 1.0e-117 427.6 355 62.3
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 1.3e-117 427.2 374 62.0
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 1.3e-117 427.2 359 61.8
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 2.3e-117 426.4 355 62.5
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 6.6e-117 424.9 355 62.3
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 1.9e-116 423.3 355 61.4
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 7.3e-116 421.4 287 72.5
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 7.3e-116 421.4 378 59.5
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 7.3e-116 421.4 378 59.5
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 9.6e-116 421.0 340 64.1
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 1.6e-115 420.2 356 61.2
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 2.8e-115 419.5 374 60.7
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 3.6e-115 419.1 355 62.0
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 2.4e-114 416.4 369 60.2
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 2.4e-114 416.4 369 60.2
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 5.2e-114 415.2 362 58.6
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 6.8e-114 414.8 393 57.8
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 2.6e-113 412.9 338 62.1
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 7.6e-113 411.4 394 57.9
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 7.6e-113 411.4 375 58.9
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 1.3e-112 410.6 374 57.5
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 2.9e-112 409.5 385 57.7
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 7.1e-111 404.8 376 57.7
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 9.3e-111 404.4 375 57.6
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 2.1e-110 403.3 287 69.0
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 2.1e-110 403.3 378 57.1
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 4.6e-110 402.1 353 60.6
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 1.0e-109 401.0 376 57.2
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 3.9e-109 399.1 361 57.9
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 6.2e-107 391.7 356 57.9
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 6.2e-107 391.7 356 57.9
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 1.1e-106 391.0 357 57.4
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 1.4e-106 390.6 356 57.9
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 1.8e-106 390.2 359 57.4
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 4.0e-106 389.0 359 56.8
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 5.3e-106 388.7 357 58.8
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 6.9e-106 388.3 355 57.5
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 1.2e-105 387.5 356 57.9
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 5.8e-105 385.2 358 56.7
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 2.2e-104 383.3 374 56.4
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 2.9e-104 382.9 358 56.4
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 4.9e-104 382.1 375 55.5
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 4.9e-104 382.1 375 54.4
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 6.4e-104 381.7 328 60.4
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 1.1e-103 380.9 358 56.1
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 1.4e-103 380.6 375 55.2
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 1.4e-103 380.6 485 45.8
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 9.3e-103 377.9 369 56.4
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 1.6e-102 377.1 339 59.0
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 2.1e-102 376.7 340 57.4
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 3.5e-102 375.9 354 54.5
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 1.3e-101 374.0 377 54.4
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 2.3e-101 373.2 377 54.4
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 8.7e-101 371.3 377 54.1
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 1.1e-100 370.9 375 54.9
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 4.3e-100 369.0 287 65.2
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 5.6e-100 368.6 381 54.6
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 1.3e-99 367.5 372 54.3
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 1.6e-99 367.1 290 59.7
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 4.8e-99 365.5 371 52.8
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 8.1e-99 364.8 361 54.6
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 1.8e-98 363.6 376 54.8
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 5.8e-97 358.6 351 53.0
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 9.9e-97 357.8 378 53.2
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 1.9e-95 353.6 381 53.8
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 1.9e-95 353.6 381 53.8
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 1.2e-94 350.9 381 53.5
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 1.0e-93 347.8 382 52.9
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 1.0e-93 347.8 382 52.9
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 3.7e-91 339.3 354 51.4
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 1.1e-90 337.8 359 53.8
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 4.0e-90 335.9 392 48.7
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 5.8e-89 332.0 287 61.3
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 1.0e-88 331.3 291 62.5
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 5.5e-79 298.9 251 60.6
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 1.8e-69 267.3 206 66.5
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 5.7e-60 235.7 289 43.6
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 4.8e-51 206.1 171 61.4
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 1.0e-48 198.4 160 62.5
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 2.2e-48 197.2 287 37.6
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 1.0e-37 161.8 258 38.8
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 5.6e-31 139.4 248 37.5
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 6.8e-29 132.5 122 55.7
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 1.1e-18 98.6 174 37.4
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 1.4e-18 98.2 103 57.3
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 1.2e-17 95.1 280 27.1
Dinv20013 Davidia involucrata HOM05D004835 ORTHO05D006046 1.3e-16 91.7 72 59.7
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 4.3e-15 86.7 127 48.0
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 1.3e-08 65.1 56 58.9
QL10p027838 Quercus lobata HOM05D004835 ORTHO05D337120 7.3e-07 59.3 113 41.6


User provided reference genes

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