Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0002181 Helianthus annuus HOM05D003565 ORTHO05D003943 2.1e-80 302.4 160 100.0
HanXRQChr05g0130321 Helianthus annuus HOM05D003565 ORTHO05D003943 3.4e-70 268.5 160 86.9
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 9.6e-25 117.5 140 44.3
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 2.1e-24 116.3 145 46.2
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 6.9e-23 111.3 150 46.0
HanXRQChr03g0089401 Helianthus annuus HOM05D003565 ORTHO05D003943 1.7e-21 106.7 138 46.4
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 2.2e-21 106.3 141 46.1
HanXRQChr03g0089351 Helianthus annuus HOM05D003565 ORTHO05D003943 6.4e-21 104.8 139 46.8
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 5.1e-18 95.1 145 40.0
HanXRQChr08g0214531 Helianthus annuus HOM05D003565 ORTHO05D003943 5.1e-18 95.1 156 46.2
HanXRQChr03g0088811 Helianthus annuus HOM05D003565 ORTHO05D003943 6.7e-18 94.7 145 49.0
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 1.5e-17 93.6 147 38.8
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 1.9e-17 93.2 151 37.7
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 2.5e-17 92.8 114 43.0
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 3.3e-17 92.4 144 37.5
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 4.3e-17 92.0 146 39.7
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 7.4e-17 91.3 146 39.0
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 7.4e-17 91.3 146 39.0
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 9.6e-17 90.9 147 37.4
Thecc.04G287000 Theobroma cacao HOM05D003565 ORTHO05D003943 9.6e-17 90.9 148 39.2
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 1.6e-16 90.1 114 44.7
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 2.1e-16 89.7 147 36.1
HanXRQChr03g0089391 Helianthus annuus HOM05D003565 ORTHO05D003943 2.1e-16 89.7 120 47.5
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 2.1e-16 89.7 140 41.4
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 3.7e-16 89.0 142 39.4
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 4.8e-16 88.6 145 41.4
Gohir.D10G171300 Gossypium hirsutum HOM05D003565 ORTHO05D003943 1.4e-15 87.0 147 36.7
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 2.4e-15 86.3 147 37.4
HanXRQChr03g0088801 Helianthus annuus HOM05D003565 ORTHO05D003943 2.4e-15 86.3 147 44.2
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 3.1e-15 85.9 141 39.0
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 4.0e-15 85.5 147 37.4
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 6.9e-15 84.7 146 36.3
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 9.0e-15 84.3 147 33.3
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 9.0e-15 84.3 141 38.3
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 1.2e-14 84.0 147 33.3
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.2e-14 84.0 147 33.3
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 1.2e-14 84.0 145 35.9
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 1.5e-14 83.6 146 38.4
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 2.0e-14 83.2 142 38.7
Psat1g155160 Pisum sativum HOM05D003565 ORTHO05D003943 2.0e-14 83.2 141 39.7
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 2.0e-14 83.2 141 39.0
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 2.6e-14 82.8 140 39.3
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 2.6e-14 82.8 144 34.7
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 4.5e-14 82.0 150 34.7
Nitab4.5_0000513g0180 Nicotiana tabacum HOM05D003565 ORTHO05D003943 7.6e-14 81.3 148 36.5
Sed0004032 Sechium edule HOM05D003565 ORTHO05D003943 7.6e-14 81.3 151 35.1
Actinidia14291 Actinidia chinensis HOM05D003565 ORTHO05D003943 1.0e-13 80.9 134 38.8
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 1.3e-13 80.5 140 37.9
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 1.7e-13 80.1 154 37.7
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.7e-13 80.1 147 33.3
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 1.7e-13 80.1 115 39.1
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 2.2e-13 79.7 145 34.5
BcaC09g48620 Brassica carinata HOM05D003565 ORTHO05D003943 2.9e-13 79.3 151 39.7
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 3.8e-13 79.0 145 34.5
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 3.8e-13 79.0 148 34.5
ClCG05G006170 Citrullus lanatus HOM05D003565 ORTHO05D003943 4.9e-13 78.6 149 33.6
COL.COLO4_13836 Corchorus olitorius HOM05D003565 ORTHO05D003943 4.9e-13 78.6 155 33.5
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 4.9e-13 78.6 146 36.3
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 6.5e-13 78.2 141 36.9
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 6.5e-13 78.2 141 36.9
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 8.4e-13 77.8 145 34.5
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 8.4e-13 77.8 134 38.8
FAN12G0988 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.1e-12 77.4 140 37.1
VMungo1309G1767 Vigna mungo HOM05D003565 ORTHO05D003943 1.1e-12 77.4 128 37.5
Cc03_g01690 Coffea canephora HOM05D003565 ORTHO05D003943 1.4e-12 77.0 147 34.7
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.9e-12 76.6 145 34.5
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.9e-12 76.6 145 34.5
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 1.9e-12 76.6 154 35.7
Oeu064291.1 Olea europaea HOM05D003565 ORTHO05D003943 1.9e-12 76.6 154 35.7
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 2.5e-12 76.3 113 38.1
Carub.0002s1293 Capsella rubella HOM05D003565 ORTHO05D003943 2.5e-12 76.3 145 40.0
CARHR091920 Cardamine hirsuta HOM05D003565 ORTHO05D003943 2.5e-12 76.3 140 39.3
ECA247G1649 Erigeron canadensis HOM05D023078 ORTHO05D003943 2.5e-12 76.3 124 44.4
FvH4_4g18430 Fragaria vesca HOM05D003565 ORTHO05D003943 4.2e-12 75.5 108 41.7
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 4.2e-12 75.5 147 34.0
A01p37210 Brassica napus HOM05D003565 ORTHO05D003943 5.5e-12 75.1 101 41.6
Carub.0003s1640 Capsella rubella HOM05D003565 ORTHO05D003943 5.5e-12 75.1 145 40.0
Glyma.09G043500 Glycine max HOM05D003565 ORTHO05D003943 5.5e-12 75.1 142 35.9
Nitab4.5_0005362g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 5.5e-12 75.1 143 35.7
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 9.3e-12 74.3 144 36.1
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 1.2e-11 73.9 115 39.1
DCAR_027062 Daucus carota HOM05D003565 ORTHO05D003943 1.2e-11 73.9 146 37.7
DCAR_027064 Daucus carota HOM05D003565 ORTHO05D003943 1.2e-11 73.9 146 37.7
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 1.6e-11 73.6 115 40.0
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 1.6e-11 73.6 149 37.6
FAN12G2280 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.1e-11 73.2 111 40.5
Lalb_Chr15g0083411 Lupinus albus HOM05D003565 ORTHO05D003943 2.7e-11 72.8 145 33.1
Phvul.009G249400 Phaseolus vulgaris HOM05D003565 ORTHO05D003943 2.7e-11 72.8 137 33.6
QL06p009817 Quercus lobata HOM05D003565 ORTHO05D003943 3.5e-11 72.4 148 33.8
TAR362G0267 Trochodendron aralioides HOM05D003565 ORTHO05D003943 6.1e-11 71.6 146 34.2
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 7.9e-11 71.2 115 38.3
BcaB04g20866 Brassica carinata HOM05D003565 ORTHO05D003943 7.9e-11 71.2 112 37.5
A01p37230 Brassica napus HOM05D003565 ORTHO05D003943 1.0e-10 70.9 101 39.6
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 1.0e-10 70.9 118 35.6
AT3G16670 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 1.3e-10 70.5 145 33.8
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 1.3e-10 70.5 123 39.0
TWI09G1223 Tripterygium wilfordii HOM05D003565 ORTHO05D003943 1.3e-10 70.5 144 34.7
AL3G29590 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 1.8e-10 70.1 139 32.4
CARHR091930 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.8e-10 70.1 128 38.3
CARHR150160 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.8e-10 70.1 128 38.3
SGA_v2.0_scaffold177G39437 Striga asiatica HOM05D003565 ORTHO05D003943 2.3e-10 69.7 132 35.6
CsaV3_6G024110 Cucumis sativus L. HOM05D000549 ORTHO05D003943 3.0e-10 69.3 125 34.4
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 5.1e-10 68.6 140 34.3
Nitab4.5_0000194g0060 Nicotiana tabacum HOM05D003565 ORTHO05D003943 5.1e-10 68.6 139 36.0
Migut.N02472 Erythranthe guttata HOM05D003565 ORTHO05D003943 1.5e-09 67.0 130 36.2
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 1.9e-09 66.6 146 32.2
Nitab4.5_0000194g0050 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.9e-09 66.6 106 41.5
Oeu027151.1 Olea europaea HOM05D003565 ORTHO05D003943 1.9e-09 66.6 143 38.5
HPP92_006917 Vanilla planifolia HOM05D003565 ORTHO05D003943 1.9e-09 66.6 143 33.6
Medtr2g436350 Medicago truncatula HOM05D003565 ORTHO05D003943 3.3e-09 65.9 145 33.8
Nitab4.5_0000493g0100 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.3e-09 65.9 122 38.5
QL06p009796 Quercus lobata HOM05D003565 ORTHO05D003943 3.3e-09 65.9 107 39.3
FAN17G0998 Fragaria x ananassa HOM05D003565 ORTHO05D003943 4.3e-09 65.5 119 38.7
Oeu026321.1 Olea europaea HOM05D003565 ORTHO05D003943 4.3e-09 65.5 118 38.1
PGR004G2038 Punica granatum HOM05D003565 ORTHO05D003943 4.3e-09 65.5 128 35.9
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 4.3e-09 65.5 148 33.8
QL06p009725 Quercus lobata HOM05D003565 ORTHO05D003943 4.3e-09 65.5 107 40.2
ATR0796G036 Amborella trichopoda HOM05D003565 ORTHO05D003943 5.7e-09 65.1 131 36.6
CSS0008161 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 5.7e-09 65.1 147 31.3
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 5.7e-09 65.1 115 34.8
QL06p009778 Quercus lobata HOM05D003565 ORTHO05D003943 5.7e-09 65.1 148 33.1
QL93p0060_0003 Quercus lobata HOM05D003565 ORTHO05D003943 5.7e-09 65.1 148 33.1
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 7.4e-09 64.7 115 35.7
Cfa015408 Carpinus fangiana HOM05D003565 ORTHO05D003943 7.4e-09 64.7 148 36.5
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 7.4e-09 64.7 149 34.2
RcHm_v2.0_Chr4g0422901 Rosa chinensis HOM05D003565 ORTHO05D003943 9.7e-09 64.3 110 39.1
QL06p009754 Quercus lobata HOM05D003565 ORTHO05D003943 1.6e-08 63.5 149 33.6
QL93p0060_0027 Quercus lobata HOM05D003565 ORTHO05D003943 1.6e-08 63.5 148 33.1
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.8e-08 62.8 147 32.7
CiPaw.02G081600 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.8e-08 62.8 116 37.1
Oeu027152.1 Olea europaea HOM05D003565 ORTHO05D003943 4.8e-08 62.0 144 35.4
TPR.G31280 Trifolium pratense HOM05D003565 ORTHO05D003943 4.8e-08 62.0 115 34.8
BcaB04g18928 Brassica carinata HOM05D003565 ORTHO05D003943 6.3e-08 61.6 134 35.8
BcaC09g48665 Brassica carinata HOM05D003565 ORTHO05D003943 8.2e-08 61.2 107 36.4
C01p47150 Brassica napus HOM05D003565 ORTHO05D003943 8.2e-08 61.2 107 36.4
DCAR_030515 Daucus carota HOM05D003565 ORTHO05D003943 8.2e-08 61.2 123 33.3
QL06p009739 Quercus lobata HOM05D003565 ORTHO05D003943 8.2e-08 61.2 148 32.4
BolC1t04684H Brassica oleracea HOM05D003565 ORTHO05D003943 1.1e-07 60.8 108 36.1
BraA01t03781Z Brassica rapa HOM05D003565 ORTHO05D003943 1.1e-07 60.8 108 36.1
DCAR_022430 Daucus carota HOM05D003565 ORTHO05D003943 1.1e-07 60.8 123 33.3
Sed0026730 Sechium edule HOM05D003565 ORTHO05D003943 1.1e-07 60.8 115 32.2
A03p40060 Brassica napus HOM05D003565 ORTHO05D003943 1.4e-07 60.5 137 34.3
BraA03t13156Z Brassica rapa HOM05D003565 ORTHO05D003943 1.4e-07 60.5 137 34.3
QL06p009701 Quercus lobata HOM05D003565 ORTHO05D003943 1.8e-07 60.1 149 32.9
QL93p0060_0019 Quercus lobata HOM05D003565 ORTHO05D003943 1.8e-07 60.1 149 32.9
BraA01t03783Z Brassica rapa HOM05D003565 ORTHO05D003943 2.4e-07 59.7 108 36.1
DCAR_002472 Daucus carota HOM05D003565 ORTHO05D003943 2.4e-07 59.7 137 32.1
QL06p009664 Quercus lobata HOM05D003565 ORTHO05D003943 3.1e-07 59.3 138 31.2
QL93p0060_0047 Quercus lobata HOM05D003565 ORTHO05D003943 9.0e-07 57.8 149 32.2
Nitab4.5_0000930g0010 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.5e-06 57.0 97 41.2
Zm00001eb016410 Zea mays HOM05D003565 ORTHO05D003943 2.6e-06 56.2 163 31.9
Eucgr.H03941 Eucalyptus grandis HOM05D003565 ORTHO05D003943 3.4e-06 55.8 151 30.5
ECA234G0512 Erigeron canadensis HOM05D023078 ORTHO05D003943 7.7e-06 54.7 133 36.1
ECA234G0883 Erigeron canadensis HOM05D023078 ORTHO05D003943 7.7e-06 54.7 133 36.1


User provided reference genes

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