Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0001931 Helianthus annuus HOM05D004140 ORTHO05D006116 9.5e-167 590.1 299 100.0
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 3.0e-144 515.4 299 88.0
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 1.9e-95 353.2 299 62.5
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 1.6e-94 350.1 299 61.5
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 1.4e-93 347.1 296 62.8
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 6.5e-91 338.2 300 59.0
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 6.5e-91 338.2 300 59.0
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 1.9e-90 336.7 300 60.3
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 2.5e-90 336.3 300 59.3
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 2.1e-89 333.2 299 58.5
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 6.1e-89 331.6 299 58.5
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 1.0e-88 330.9 300 59.0
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 1.4e-88 330.5 299 58.9
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 3.9e-88 328.9 299 58.2
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 8.8e-88 327.8 298 57.7
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 1.5e-87 327.0 298 55.7
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 1.5e-87 327.0 295 58.3
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 1.9e-87 326.6 299 57.5
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 2.5e-87 326.2 299 58.9
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 3.3e-87 325.9 299 57.5
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 4.3e-87 325.5 299 57.9
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 5.7e-87 325.1 298 58.1
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 5.7e-87 325.1 299 57.2
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 1.3e-86 323.9 299 58.2
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 1.7e-86 323.6 300 57.3
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 1.7e-86 323.6 299 58.2
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 1.7e-86 323.6 300 56.7
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 2.2e-86 323.2 298 56.4
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 2.2e-86 323.2 298 56.4
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 2.8e-86 322.8 300 57.7
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 2.8e-86 322.8 299 56.9
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 3.7e-86 322.4 299 56.9
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 3.7e-86 322.4 299 56.2
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 3.7e-86 322.4 299 58.9
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 3.7e-86 322.4 299 56.5
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 3.7e-86 322.4 299 57.9
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 3.7e-86 322.4 299 58.5
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 6.3e-86 321.6 300 57.3
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 2.4e-85 319.7 299 58.5
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 3.1e-85 319.3 300 57.0
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 4.1e-85 318.9 299 58.2
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 5.3e-85 318.5 297 57.6
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 6.9e-85 318.2 297 56.9
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 6.9e-85 318.2 299 57.2
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 9.1e-85 317.8 299 55.9
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 1.5e-84 317.0 300 56.3
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 1.5e-84 317.0 299 55.2
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 5.9e-84 315.1 298 55.4
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 7.7e-84 314.7 299 56.9
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 7.7e-84 314.7 300 56.0
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 1.3e-83 313.9 298 56.0
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 2.9e-83 312.8 300 55.3
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 3.8e-83 312.4 300 56.3
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 6.5e-83 311.6 299 56.2
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 8.5e-83 311.2 300 54.3
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 1.1e-82 310.8 299 55.5
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.1e-82 310.8 299 55.5
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.1e-82 310.8 299 55.5
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.4e-82 310.5 299 55.5
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 1.9e-82 310.1 299 55.9
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 1.2e-81 307.4 300 53.7
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 1.6e-81 307.0 303 53.5
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 2.1e-81 306.6 297 55.6
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 2.7e-81 306.2 364 48.6
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 4.7e-81 305.4 300 53.3
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 1.0e-80 304.3 307 53.4
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 1.4e-80 303.9 299 54.5
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 1.8e-80 303.5 307 53.4
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 3.0e-80 302.8 299 54.5
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.9e-80 302.4 310 53.5
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 5.1e-80 302.0 300 55.0
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 6.7e-80 301.6 299 54.5
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 8.8e-80 301.2 299 54.2
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 2.6e-79 299.7 299 54.2
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 2.6e-79 299.7 299 54.2
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 3.3e-79 299.3 299 53.8
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 3.3e-79 299.3 299 53.8
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 1.3e-78 297.4 299 53.5
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 1.7e-78 297.0 299 53.2
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 1.7e-78 297.0 299 53.8
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 4.8e-78 295.4 299 53.2
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 6.3e-78 295.0 299 55.2
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 1.1e-77 294.3 317 52.4
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 1.1e-77 294.3 300 52.7
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 1.8e-77 293.5 340 49.4
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 1.8e-77 293.5 300 54.3
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 2.4e-77 293.1 301 52.8
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 2.4e-77 293.1 300 52.7
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 3.1e-77 292.7 303 52.1
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 1.2e-76 290.8 315 51.4
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 1.5e-76 290.4 301 52.5
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 5.9e-76 288.5 297 51.9
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 1.3e-75 287.3 297 51.9
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 2.9e-75 286.2 295 52.2
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 2.9e-75 286.2 296 53.7
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 6.5e-75 285.0 255 59.6
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 8.5e-75 284.6 297 51.9
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 2.1e-73 280.0 299 52.5
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 4.7e-73 278.9 297 51.5
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 2.8e-70 269.6 299 49.8
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 7.0e-69 265.0 404 42.1
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 2.6e-63 246.5 310 46.5
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 1.3e-62 244.2 308 45.5
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 1.7e-62 243.8 293 46.4
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 1.4e-61 240.7 304 46.7
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 2.7e-60 236.5 544 33.1
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 2.2e-59 233.4 299 43.8
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 3.8e-59 232.6 180 65.6
Psat3g173280 Pisum sativum HOM05D004140 ORTHO05D006116 1.9e-58 230.3 241 51.5
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 3.2e-58 229.6 315 41.3
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 4.0e-56 222.6 288 45.8
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 4.0e-56 222.6 154 70.8
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 6.3e-54 215.3 156 66.7
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 8.3e-54 214.9 156 67.3
FvH4_6g18750 Fragaria vesca HOM05D004140 ORTHO05D006116 6.6e-51 205.3 285 43.5
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 9.5e-50 201.4 155 60.6
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 2.1e-49 200.3 256 46.9
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 3.1e-45 186.4 297 41.4
RcHm_v2.0_Chr2g0168601 Rosa chinensis HOM05D004140 ORTHO05D006116 2.0e-44 183.7 277 40.4
FvH4_6g48690 Fragaria vesca HOM05D004140 ORTHO05D006116 1.3e-38 164.5 276 40.2
FAN02G1609 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.3e-38 164.5 276 40.6
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 6.4e-38 162.2 300 35.0
Lj2A1003T9 Lonicera japonica HOM05D004140 ORTHO05D006116 4.6e-36 156.0 217 45.2
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 4.6e-36 156.0 303 33.0
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 5.6e-34 149.1 121 64.5
BcaC03g12977 Brassica carinata HOM05D004140 ORTHO05D006116 1.4e-32 144.4 181 44.8
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 3.1e-32 143.3 268 36.2
FvH4_6g48680 Fragaria vesca HOM05D004140 ORTHO05D045602 9.8e-31 138.3 269 37.9
FAN14G1397 Fragaria x ananassa HOM05D004140 ORTHO05D045602 1.9e-29 134.0 266 37.2
FAN09G1572 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.2e-29 133.3 363 32.5
FAN14G0184 Fragaria x ananassa HOM05D004140 ORTHO05D006116 7.8e-28 128.6 272 35.7
RcHm_v2.0_Chr3g0473721 Rosa chinensis HOM05D004140 ORTHO05D006116 2.8e-25 120.2 80 68.8
PGSC0003DMG400019058 Solanum tuberosum HOM05D004140 ORTHO05D006116 6.2e-25 119.0 139 47.5
RcHm_v2.0_Chr3g0473711 Rosa chinensis HOM05D004140 ORTHO05D006116 3.4e-23 113.2 159 42.8
Cpa.g.sc5.18 Carica papaya HOM05D004140 ORTHO05D006116 5.8e-23 112.5 94 57.4
SEGI_36218 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 7.1e-21 105.5 91 58.2
SEGI_03177 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 3.1e-16 90.1 105 45.7
SHI23815 Sapria himalayana HOM05D004140 ORTHO05D006116 7.6e-15 85.5 96 49.0
FvH4_6g48651 Fragaria vesca HOM05D004140 ORTHO05D045442 1.3e-14 84.7 242 31.8
DCAR_013386 Daucus carota HOM05D004140 ORTHO05D006116 1.7e-14 84.3 137 37.2
FAN09G0971 Fragaria x ananassa HOM05D004140 ORTHO05D045442 1.7e-14 84.3 242 32.2
MCO05G565 Micromonas commoda HOM05D004140 ORTHO05D269347 1.1e-13 81.6 123 35.8
FvH4_6g48650 Fragaria vesca HOM05D004140 ORTHO05D197702 9.2e-13 78.6 248 29.4
SEGI_11477 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 1.3e-11 74.7 84 50.0
arahy.Tifrunner.gnm1.ann1.LXEN71 Arachis hypogaea HOM05D000344 ORTHO05D005296 3.6e-09 66.6 93 43.0
arahy.Tifrunner.gnm1.ann1.2FV8W6 Arachis hypogaea HOM05D000344 ORTHO05D005296 1.8e-08 64.3 68 51.5
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 6.4e-06 55.8 28 75.0


User provided reference genes

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