Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0001911 Helianthus annuus HOM05D006346 ORTHO05D007910 2.1e-73 278.9 136 100.0
HanXRQChr10g0313691 Helianthus annuus HOM05D006346 ORTHO05D007910 2.5e-18 95.9 53 81.1
Lsat_1_v5_gn_5_89421 Lactuca sativa HOM05D006346 ORTHO05D007910 2.5e-18 95.9 53 81.1
COL.COLO4_23953 Corchorus olitorius HOM05D006346 ORTHO05D007910 3.3e-18 95.5 56 76.8
Solyc07g005870.3 Solanum lycopersicum HOM05D006346 ORTHO05D007910 3.3e-18 95.5 53 81.1
Sopen07g001980 Solanum pennellii HOM05D006346 ORTHO05D007910 3.3e-18 95.5 53 81.1
Prupe.7G265700 Prunus persica HOM05D006346 ORTHO05D007910 5.7e-18 94.7 53 79.2
ECA234G1139 Erigeron canadensis HOM05D006346 ORTHO05D007910 7.4e-18 94.4 53 79.2
MD02G1005300 Malus domestica HOM05D006346 ORTHO05D007910 1.3e-17 93.6 53 77.4
TPR.G10032 Trifolium pratense HOM05D006346 ORTHO05D007910 1.3e-17 93.6 53 79.2
EL10Ac8g18923 Beta vulgaris HOM05D006346 ORTHO05D007910 1.7e-17 93.2 51 82.4
AUR62028356 Chenopodium quinoa HOM05D006346 ORTHO05D007910 1.7e-17 93.2 51 82.4
FvH4_1g00650 Fragaria vesca HOM05D006346 ORTHO05D007910 1.7e-17 93.2 53 77.4
FAN26G0534 Fragaria x ananassa HOM05D006346 ORTHO05D007910 1.7e-17 93.2 53 77.4
FAN28G1995 Fragaria x ananassa HOM05D006346 ORTHO05D007910 1.7e-17 93.2 53 77.4
Hma1.2p1_0028F.1_g017690 Hydrangea macrophylla HOM05D006346 ORTHO05D007910 1.7e-17 93.2 53 79.2
Hma1.2p1_0028F.1_g017700 Hydrangea macrophylla HOM05D006346 ORTHO05D007910 1.7e-17 93.2 53 79.2
Psat4g134640 Pisum sativum HOM05D006346 ORTHO05D007910 1.7e-17 93.2 53 75.5
RcHm_v2.0_Chr2g0085271 Rosa chinensis HOM05D006346 ORTHO05D007910 1.7e-17 93.2 53 77.4
CAN.G160.15 Capsicum annuum HOM05D006346 ORTHO05D007910 2.8e-17 92.4 53 79.2
Glyma.07G102300 Glycine max HOM05D006346 ORTHO05D007910 2.8e-17 92.4 53 77.4
Lj6g0013256 Lotus japonicus HOM05D006346 ORTHO05D007910 2.8e-17 92.4 53 77.4
Thecc.09G152100 Theobroma cacao HOM05D006346 ORTHO05D007910 2.8e-17 92.4 56 75.0
arahy.Tifrunner.gnm1.ann1.ID3JIZ Arachis hypogaea HOM05D006346 ORTHO05D007910 3.7e-17 92.0 53 77.4
arahy.Tifrunner.gnm1.ann1.VMKR8Z Arachis hypogaea HOM05D006346 ORTHO05D007910 3.7e-17 92.0 53 77.4
AUR62025356 Chenopodium quinoa HOM05D006346 ORTHO05D007910 3.7e-17 92.0 51 80.4
FAN23G2716 Fragaria x ananassa HOM05D006346 ORTHO05D007910 3.7e-17 92.0 53 75.5
Medtr8g467050 Medicago truncatula HOM05D006346 ORTHO05D007910 3.7e-17 92.0 53 75.5
Phvul.003G072700 Phaseolus vulgaris HOM05D006346 ORTHO05D007910 3.7e-17 92.0 53 75.5
Nitab4.5_0003551g0040 Nicotiana tabacum HOM05D006346 ORTHO05D007910 6.3e-17 91.3 53 77.4
ATR0739G030 Amborella trichopoda HOM05D006346 ORTHO05D007910 8.2e-17 90.9 51 82.4
Ca_22901_v3 Cicer arietinum L. HOM05D006346 ORTHO05D007910 8.2e-17 90.9 53 73.6
Manes.14G142800 Manihot esculenta HOM05D006346 ORTHO05D007910 8.2e-17 90.9 53 75.5
Nitab4.5_0002611g0100 Nicotiana tabacum HOM05D006346 ORTHO05D007910 8.2e-17 90.9 53 75.5
Ah.09g228750 Amaranthus hybridus HOM05D006346 ORTHO05D007910 1.1e-16 90.5 51 78.4
Rhsim01G0026600 Rhododendron simsii HOM05D006346 ORTHO05D007910 1.1e-16 90.5 53 79.2
vmacro16782 Vaccinium macrocarpon HOM05D006346 ORTHO05D007910 1.1e-16 90.5 53 79.2
CiPaw.15G165500 Carya illinoinensis HOM05D006346 ORTHO05D007910 1.4e-16 90.1 53 73.6
Oeu052219.3 Olea europaea HOM05D006346 ORTHO05D007910 1.4e-16 90.1 53 77.4
QL02p093888 Quercus lobata HOM05D006346 ORTHO05D007910 1.4e-16 90.1 51 80.4
CANSAT11G2498 Cannabis sativa HOM05D006346 ORTHO05D007910 1.8e-16 89.7 53 73.6
ClCG02G014350 Citrullus lanatus HOM05D006346 ORTHO05D007910 2.4e-16 89.4 51 78.4
Cc06_g14630 Coffea canephora HOM05D006346 ORTHO05D007910 2.4e-16 89.4 51 78.4
MELO3C004121.2 Cucumis melo HOM05D006346 ORTHO05D007910 2.4e-16 89.4 51 78.4
Migut.J01382 Erythranthe guttata HOM05D006346 ORTHO05D007910 2.4e-16 89.4 53 77.4
Lalb_Chr08g0234231 Lupinus albus HOM05D006346 ORTHO05D007910 2.4e-16 89.4 53 75.5
Hund08940 Selenicereus undatus HOM05D006346 ORTHO05D007910 2.4e-16 89.4 51 78.4
GSVIVG01008451001 Vitis vinifera HOM05D006346 ORTHO05D007910 2.4e-16 89.4 53 75.5
Aqoxy7G03359 Aquilegia oxysepala HOM05D006346 ORTHO05D007910 3.1e-16 89.0 53 75.5
CsaV3_2G007650 Cucumis sativus L. HOM05D006346 ORTHO05D007910 3.1e-16 89.0 51 78.4
Eucgr.C02508 Eucalyptus grandis HOM05D006346 ORTHO05D007910 3.1e-16 89.0 53 73.6
Os05g0411200 Oryza sativa ssp. japonica HOM05D006346 ORTHO05D007910 3.1e-16 89.0 51 78.4
SalBow1G6401 Salvia bowleyana HOM05D006346 ORTHO05D007910 3.1e-16 89.0 60 68.3
MSTRG.6156 Avicennia marina HOM05D006346 ORTHO05D007910 4.1e-16 88.6 53 75.5
Cfa020798 Carpinus fangiana HOM05D006346 ORTHO05D007910 4.1e-16 88.6 53 75.5
Dinv42829 Davidia involucrata HOM05D006346 ORTHO05D007910 4.1e-16 88.6 53 75.5
Dinv43271 Davidia involucrata HOM05D006346 ORTHO05D007910 4.1e-16 88.6 53 75.5
Lj9A719T56 Lonicera japonica HOM05D006346 ORTHO05D007910 4.1e-16 88.6 53 75.5
PSO782G0769 Papaver somniferum HOM05D006346 ORTHO05D007910 4.1e-16 88.6 53 75.5
Peaxi162Scf00401g00218 Petunia axillaris HOM05D006346 ORTHO05D007910 4.1e-16 88.6 53 73.6
Potri.018G103700 Populus trichocarpa HOM05D006346 ORTHO05D007910 4.1e-16 88.6 53 73.6
TWI34G0405 Tripterygium wilfordii HOM05D006346 ORTHO05D007910 4.1e-16 88.6 53 73.6
HPP92_020605 Vanilla planifolia HOM05D006346 ORTHO05D007910 4.1e-16 88.6 51 76.5
PGR102G0252 Punica granatum HOM05D006346 ORTHO05D007910 5.3e-16 88.2 56 73.2
Sabra18G0089100 Salix brachista HOM05D006346 ORTHO05D007910 5.3e-16 88.2 53 71.7
AL7G21400 Arabidopsis lyrata HOM05D006346 ORTHO05D007910 6.9e-16 87.8 53 75.5
AT4G30720 Arabidopsis thaliana HOM05D006346 ORTHO05D007910 6.9e-16 87.8 53 75.5
BcaNung01563 Brassica carinata HOM05D006346 ORTHO05D007910 6.9e-16 87.8 53 75.5
BcaNung02744 Brassica carinata HOM05D006346 ORTHO05D007910 6.9e-16 87.8 53 75.5
A03p60280 Brassica napus HOM05D006346 ORTHO05D007910 6.9e-16 87.8 53 75.5
C07p58190 Brassica napus HOM05D006346 ORTHO05D007910 6.9e-16 87.8 53 75.5
BolC7t46278H Brassica oleracea HOM05D006346 ORTHO05D007910 6.9e-16 87.8 53 75.5
BraA03t15070Z Brassica rapa HOM05D006346 ORTHO05D007910 6.9e-16 87.8 53 75.5
Carub.0007s0978 Capsella rubella HOM05D006346 ORTHO05D007910 6.9e-16 87.8 53 75.5
Thhalv10024548m.g Eutrema salsugineum HOM05D006346 ORTHO05D007910 6.9e-16 87.8 53 75.5
Gorai.012G099000 Gossypium raimondii HOM05D006346 ORTHO05D007910 6.9e-16 87.8 56 71.4
Nn8g39991 Nelumbo nucifera HOM05D006346 ORTHO05D007910 6.9e-16 87.8 53 73.6
PSO063G0785 Papaver somniferum HOM05D006346 ORTHO05D007910 6.9e-16 87.8 53 73.6
Sp7g28630 Schrenkiella parvula HOM05D006346 ORTHO05D007910 6.9e-16 87.8 53 75.5
Sed0021167 Sechium edule HOM05D006346 ORTHO05D007910 6.9e-16 87.8 51 74.5
Sc14g0000950 Simmondsia chinensis HOM05D006346 ORTHO05D007910 6.9e-16 87.8 51 76.5
Atru.chr7.350 Acer truncatum HOM05D006346 ORTHO05D007910 9.1e-16 87.4 56 71.4
Actinidia38309 Actinidia chinensis HOM05D006346 ORTHO05D007910 9.1e-16 87.4 53 73.6
Aa31LG2G19630 Aethionema arabicum HOM05D006346 ORTHO05D007910 9.1e-16 87.4 53 75.5
Gohir.D04G088700 Gossypium hirsutum HOM05D006346 ORTHO05D007910 9.1e-16 87.4 56 71.4
Zm00001eb288040 Zea mays HOM05D006346 ORTHO05D007910 9.1e-16 87.4 51 76.5
CSS0042716 Camellia sinensis var. sinensis HOM05D006346 ORTHO05D007910 1.2e-15 87.0 53 75.5
Ciclev10007623m.g Citrus clementina HOM05D006346 ORTHO05D007910 1.2e-15 87.0 56 69.6
Gohir.A04G059826 Gossypium hirsutum HOM05D006346 ORTHO05D007910 1.2e-15 87.0 56 71.4
TAR383G0381 Trochodendron aralioides HOM05D006346 ORTHO05D007910 2.6e-15 85.9 53 73.6
DCAR_019414 Daucus carota HOM05D006346 ORTHO05D007910 3.4e-15 85.5 51 74.5
Pp3c23_14180 Physcomitrium patens HOM05D006346 ORTHO05D007910 5.9e-15 84.7 51 70.6
Mapoly0021s0085 Marchantia polymorpha HOM05D006346 ORTHO05D007910 7.7e-15 84.3 51 72.5
THA.LOC104803912 Tarenaya hassleriana HOM05D006346 ORTHO05D007910 1.3e-14 83.6 51 70.6
SMO146G0018 Selaginella moellendorffii HOM05D006346 ORTHO05D007910 1.4e-13 80.1 50 68.0
MCO14G279 Micromonas commoda HOM05D006346 ORTHO05D007910 3.2e-13 79.0 51 66.7
HanXRQChr12g0373381 Helianthus annuus HOM05D032210 ORTHO05D223964 4.2e-13 78.6 40 90.0
AagrBONN_evm.TU.Sc2ySwM_344.1120 Anthoceros agrestis HOM05D006346 ORTHO05D007910 1.2e-12 77.0 47 70.2
Cre17.g744997 Chlamydomonas reinhardtii HOM05D006346 ORTHO05D007910 3.6e-12 75.5 47 66.0
PRCOL_00000449 Prasinoderma coloniale HOM05D006346 ORTHO05D007910 3.0e-11 72.4 49 65.3
SGA_v2.0_scaffold45G17017 Striga asiatica HOM05D006346 ORTHO05D007910 3.0e-11 72.4 82 48.8
Haze_19155 Corylus avellana HOM05D006346 ORTHO05D007910 1.5e-10 70.1 90 44.4
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 2.0e-10 69.7 89 46.1
HanXRQChr06g0183861 Helianthus annuus HOM05D032210 ORTHO05D220147 9.7e-10 67.4 51 70.6
A05p44400 Brassica napus HOM05D034890 ORTHO05D100541 9.1e-08 60.8 52 55.8
Glyma.04G155150 Glycine max HOM05D006346 ORTHO05D007910 2.9e-06 55.8 31 77.4
CDE02G4510 Ceratophyllum demersum HOM05D000062 ORTHO05D000043 8.5e-06 54.3 64 45.3


User provided reference genes

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